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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    43001 8ir6:K (2.2) BS03 CLA ? GO:0005737 ... P19054 38297122
    43002 8ir6:a (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43003 8ir6:a (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43004 8ir6:a (2.2) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43005 8ir6:a (2.2) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43006 8ir6:b (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43007 8ir6:b (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43008 8ir6:b (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43009 8ir6:b (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43010 8ir6:b (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43011 8ir6:b (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43012 8ir6:b (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43013 8ir6:b (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43014 8ir6:b (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43015 8ir6:b (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43016 8ir6:b (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43017 8ir6:b (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43018 8ir6:b (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43019 8ir6:b (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43020 8ir6:b (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43021 8ir6:c (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43022 8ir6:c (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43023 8ir6:c (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43024 8ir6:c (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43025 8ir6:c (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43026 8ir6:c (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43027 8ir6:c (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43028 8ir6:c (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43029 8ir6:c (2.2) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43030 8ir6:c (2.2) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43031 8ir6:c (2.2) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43032 8ir6:c (2.2) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43033 8ir6:c (2.2) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43034 8ir6:d (2.2) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43035 8ir6:d (2.2) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43036 8ir6:d (2.2) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43037 8ir6:d (2.2) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43038 8ir6:d (2.2) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43039 8ir6:h (2.2) BS01 CLA ? GO:0009523 ... P19052 38297122
    43040 8ir6:h (2.2) BS02 CLA ? GO:0009523 ... P19052 38297122
    43041 8ir6:h (2.2) BS03 CLA ? GO:0009523 ... P19052 38297122
    43042 8ir6:h (2.2) BS04 CLA ? GO:0009523 ... P19052 38297122
    43043 8ir6:i (2.2) BS01 CLA ? GO:0005737 ... P12240 38297122
    43044 8ir6:k (2.2) BS02 CLA ? GO:0005737 ... P19054 38297122
    43045 8ir6:k (2.2) BS03 CLA ? GO:0005737 ... P19054 38297122
    43046 8ir6:x (2.2) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    43047 8ir7:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43048 8ir7:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43049 8ir7:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43050 8ir7:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43051 8ir7:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43052 8ir7:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43053 8ir7:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43054 8ir7:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43055 8ir7:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43056 8ir7:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43057 8ir7:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43058 8ir7:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43059 8ir7:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43060 8ir7:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43061 8ir7:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43062 8ir7:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43063 8ir7:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43064 8ir7:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43065 8ir7:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43066 8ir7:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    43067 8ir7:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43068 8ir7:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43069 8ir7:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43070 8ir7:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43071 8ir7:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43072 8ir7:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43073 8ir7:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43074 8ir7:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43075 8ir7:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43076 8ir7:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43077 8ir7:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43078 8ir7:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43079 8ir7:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43080 8ir7:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43081 8ir7:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43082 8ir7:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43083 8ir7:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43084 8ir7:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43085 8ir7:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    43086 8ir7:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    43087 8ir7:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    43088 8ir7:H (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    43089 8ir7:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    43090 8ir7:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    43091 8ir7:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    43092 8ir7:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43093 8ir7:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43094 8ir7:a (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43095 8ir7:a (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43096 8ir7:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43097 8ir7:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43098 8ir7:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43099 8ir7:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43100 8ir7:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43101 8ir7:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43102 8ir7:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43103 8ir7:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43104 8ir7:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43105 8ir7:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43106 8ir7:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43107 8ir7:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43108 8ir7:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43109 8ir7:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43110 8ir7:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43111 8ir7:b (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    43112 8ir7:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43113 8ir7:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43114 8ir7:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43115 8ir7:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43116 8ir7:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43117 8ir7:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43118 8ir7:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43119 8ir7:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43120 8ir7:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43121 8ir7:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43122 8ir7:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43123 8ir7:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43124 8ir7:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43125 8ir7:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43126 8ir7:d (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43127 8ir7:d (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43128 8ir7:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43129 8ir7:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43130 8ir7:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    43131 8ir7:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    43132 8ir7:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    43133 8ir7:h (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    43134 8ir7:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    43135 8ir7:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    43136 8ir7:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    43137 8ir8:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43138 8ir8:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43139 8ir8:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43140 8ir8:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43141 8ir8:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43142 8ir8:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43143 8ir8:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43144 8ir8:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43145 8ir8:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43146 8ir8:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43147 8ir8:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43148 8ir8:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43149 8ir8:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43150 8ir8:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43151 8ir8:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43152 8ir8:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43153 8ir8:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43154 8ir8:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43155 8ir8:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43156 8ir8:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    43157 8ir8:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43158 8ir8:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43159 8ir8:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43160 8ir8:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43161 8ir8:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43162 8ir8:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43163 8ir8:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43164 8ir8:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43165 8ir8:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43166 8ir8:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43167 8ir8:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43168 8ir8:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43169 8ir8:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43170 8ir8:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43171 8ir8:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43172 8ir8:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43173 8ir8:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43174 8ir8:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43175 8ir8:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    43176 8ir8:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    43177 8ir8:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    43178 8ir8:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    43179 8ir8:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    43180 8ir8:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    43181 8ir8:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43182 8ir8:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43183 8ir8:a (2.25) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43184 8ir8:a (2.25) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43185 8ir8:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43186 8ir8:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43187 8ir8:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43188 8ir8:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43189 8ir8:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43190 8ir8:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43191 8ir8:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43192 8ir8:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43193 8ir8:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43194 8ir8:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43195 8ir8:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43196 8ir8:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43197 8ir8:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43198 8ir8:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43199 8ir8:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43200 8ir8:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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