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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42201 8h2u:5 (3.4) BS06 CLA ? GO:0009416 ... Q75VY8 37270022
    42202 8h2u:5 (3.4) BS07 CLA ? GO:0009416 ... Q75VY8 37270022
    42203 8h2u:5 (3.4) BS08 CLA ? GO:0009416 ... Q75VY8 37270022
    42204 8h2u:5 (3.4) BS09 CLA ? GO:0009416 ... Q75VY8 37270022
    42205 8h2u:5 (3.4) BS10 CLA ? GO:0009416 ... Q75VY8 37270022
    42206 8h2u:5 (3.4) BS11 CLA ? GO:0009416 ... Q75VY8 37270022
    42207 8h2u:5 (3.4) BS14 CLA ? GO:0009416 ... Q75VY8 37270022
    42208 8h2u:5 (3.4) BS17 CLA ? GO:0009416 ... Q75VY8 37270022
    42209 8h2u:5 (3.4) BS18 CLA ? GO:0009416 ... Q75VY8 37270022
    42210 8h2u:6 (3.4) BS01 CLA ? GO:0009416 ... Q75VY6 37270022
    42211 8h2u:6 (3.4) BS02 CLA ? GO:0009416 ... Q75VY6 37270022
    42212 8h2u:6 (3.4) BS03 CLA ? GO:0009416 ... Q75VY6 37270022
    42213 8h2u:6 (3.4) BS04 CLA ? GO:0009416 ... Q75VY6 37270022
    42214 8h2u:6 (3.4) BS05 CLA ? GO:0009416 ... Q75VY6 37270022
    42215 8h2u:6 (3.4) BS06 CLA ? GO:0009416 ... Q75VY6 37270022
    42216 8h2u:6 (3.4) BS07 CLA ? GO:0009416 ... Q75VY6 37270022
    42217 8h2u:6 (3.4) BS08 CLA ? GO:0009416 ... Q75VY6 37270022
    42218 8h2u:6 (3.4) BS09 CLA ? GO:0009416 ... Q75VY6 37270022
    42219 8h2u:6 (3.4) BS12 CLA ? GO:0009416 ... Q75VY6 37270022
    42220 8h2u:6 (3.4) BS15 CLA ? GO:0009416 ... Q75VY6 37270022
    42221 8h2u:6 (3.4) BS16 CLA ? GO:0009416 ... Q75VY6 37270022
    42222 8h2u:6 (3.4) BS17 CLA ? GO:0009416 ... Q75VY6 37270022
    42223 8h2u:7 (3.4) BS01 CLA ? GO:0009507 ... Q75VY4 37270022
    42224 8h2u:7 (3.4) BS02 CLA ? GO:0009507 ... Q75VY4 37270022
    42225 8h2u:7 (3.4) BS03 CLA ? GO:0009507 ... Q75VY4 37270022
    42226 8h2u:7 (3.4) BS04 CLA ? GO:0009507 ... Q75VY4 37270022
    42227 8h2u:7 (3.4) BS05 CLA ? GO:0009507 ... Q75VY4 37270022
    42228 8h2u:7 (3.4) BS06 CLA ? GO:0009507 ... Q75VY4 37270022
    42229 8h2u:7 (3.4) BS07 CLA ? GO:0009507 ... Q75VY4 37270022
    42230 8h2u:7 (3.4) BS08 CLA ? GO:0009507 ... Q75VY4 37270022
    42231 8h2u:7 (3.4) BS11 CLA ? GO:0009507 ... Q75VY4 37270022
    42232 8h2u:8 (3.4) BS01 CLA ? GO:0009416 ... Q75VY7 37270022
    42233 8h2u:8 (3.4) BS02 CLA ? GO:0009416 ... Q75VY7 37270022
    42234 8h2u:8 (3.4) BS03 CLA ? GO:0009416 ... Q75VY7 37270022
    42235 8h2u:8 (3.4) BS04 CLA ? GO:0009416 ... Q75VY7 37270022
    42236 8h2u:8 (3.4) BS05 CLA ? GO:0009416 ... Q75VY7 37270022
    42237 8h2u:8 (3.4) BS06 CLA ? GO:0009416 ... Q75VY7 37270022
    42238 8h2u:8 (3.4) BS07 CLA ? GO:0009416 ... Q75VY7 37270022
    42239 8h2u:8 (3.4) BS08 CLA ? GO:0009416 ... Q75VY7 37270022
    42240 8h2u:8 (3.4) BS09 CLA ? GO:0009416 ... Q75VY7 37270022
    42241 8h2u:8 (3.4) BS12 CLA ? GO:0009416 ... Q75VY7 37270022
    42242 8h2u:A (3.4) BS01 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42243 8h2u:A (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42244 8h2u:A (3.4) BS03 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42245 8h2u:A (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42246 8h2u:A (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42247 8h2u:A (3.4) BS06 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42248 8h2u:A (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42249 8h2u:A (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42250 8h2u:A (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42251 8h2u:A (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42252 8h2u:A (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42253 8h2u:A (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42254 8h2u:A (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42255 8h2u:A (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42256 8h2u:A (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42257 8h2u:A (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42258 8h2u:A (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42259 8h2u:A (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42260 8h2u:A (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42261 8h2u:A (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42262 8h2u:A (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42263 8h2u:A (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42264 8h2u:A (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42265 8h2u:A (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42266 8h2u:A (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42267 8h2u:A (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42268 8h2u:A (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42269 8h2u:A (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42270 8h2u:A (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42271 8h2u:A (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42272 8h2u:A (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42273 8h2u:A (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42274 8h2u:A (3.4) BS33 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42275 8h2u:A (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42276 8h2u:A (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42277 8h2u:A (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42278 8h2u:A (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42279 8h2u:A (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42280 8h2u:A (3.4) BS41 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42281 8h2u:A (3.4) BS42 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42282 8h2u:A (3.4) BS43 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42283 8h2u:A (3.4) BS44 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42284 8h2u:A (3.4) BS45 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42285 8h2u:A (3.4) BS46 CLA 1.97.1.12 GO:0000287 ... P12154 37270022
    42286 8h2u:B (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42287 8h2u:B (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42288 8h2u:B (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42289 8h2u:B (3.4) BS06 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42290 8h2u:B (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42291 8h2u:B (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42292 8h2u:B (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42293 8h2u:B (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42294 8h2u:B (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42295 8h2u:B (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42296 8h2u:B (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42297 8h2u:B (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42298 8h2u:B (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42299 8h2u:B (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42300 8h2u:B (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42301 8h2u:B (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42302 8h2u:B (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42303 8h2u:B (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42304 8h2u:B (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42305 8h2u:B (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42306 8h2u:B (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42307 8h2u:B (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42308 8h2u:B (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42309 8h2u:B (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42310 8h2u:B (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42311 8h2u:B (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42312 8h2u:B (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42313 8h2u:B (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42314 8h2u:B (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42315 8h2u:B (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42316 8h2u:B (3.4) BS33 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42317 8h2u:B (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42318 8h2u:B (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42319 8h2u:B (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42320 8h2u:B (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42321 8h2u:B (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42322 8h2u:B (3.4) BS39 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42323 8h2u:B (3.4) BS40 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42324 8h2u:B (3.4) BS41 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42325 8h2u:B (3.4) BS42 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42326 8h2u:B (3.4) BS43 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42327 8h2u:B (3.4) BS45 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42328 8h2u:B (3.4) BS46 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42329 8h2u:B (3.4) BS47 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42330 8h2u:B (3.4) BS48 CLA 1.97.1.12 GO:0000287 ... P09144 37270022
    42331 8h2u:F (3.4) BS01 CLA ? GO:0005515 ... P12356 37270022
    42332 8h2u:F (3.4) BS02 CLA ? GO:0005515 ... P12356 37270022
    42333 8h2u:F (3.4) BS03 CLA ? GO:0005515 ... P12356 37270022
    42334 8h2u:G (3.4) BS01 CLA ? GO:0009507 ... P14224 37270022
    42335 8h2u:G (3.4) BS02 CLA ? GO:0009507 ... P14224 37270022
    42336 8h2u:G (3.4) BS03 CLA ? GO:0009507 ... P14224 37270022
    42337 8h2u:G (3.4) BS04 CLA ? GO:0009507 ... P14224 37270022
    42338 8h2u:H (3.4) BS02 CLA ? GO:0009507 ... P13352 37270022
    42339 8h2u:J (3.4) BS01 CLA ? GO:0009507 ... P59777 37270022
    42340 8h2u:J (3.4) BS02 CLA ? GO:0009507 ... P59777 37270022
    42341 8h2u:J (3.4) BS03 CLA ? GO:0009507 ... P59777 37270022
    42342 8h2u:J (3.4) BS04 CLA ? GO:0009507 ... P59777 37270022
    42343 8h2u:K (3.4) BS01 CLA ? GO:0009507 ... P14225 37270022
    42344 8h2u:L (3.4) BS02 CLA ? GO:0009522 ... A8IL32 37270022
    42345 8h2u:L (3.4) BS03 CLA ? GO:0009522 ... A8IL32 37270022
    42346 8h2u:L (3.4) BS04 CLA ? GO:0009522 ... A8IL32 37270022
    42347 8h2u:L (3.4) BS05 CLA ? GO:0009522 ... A8IL32 37270022
    42348 8h2u:L (3.4) BS06 CLA ? GO:0009522 ... A8IL32 37270022
    42349 8hg3:S (2.94) BS01 CLA ? GO:0009416 ... Q3B9U7 36951548
    42350 8hg3:S (2.94) BS02 CLA ? GO:0009416 ... Q3B9U7 36951548
    42351 8hg3:S (2.94) BS03 CLA ? GO:0009416 ... Q3B9U7 36951548
    42352 8hg3:S (2.94) BS09 CLA ? GO:0009416 ... Q3B9U7 36951548
    42353 8hg3:S (2.94) BS10 CLA ? GO:0009416 ... Q3B9U7 36951548
    42354 8hg3:S (2.94) BS11 CLA ? GO:0009416 ... Q3B9U7 36951548
    42355 8hg3:S (2.94) BS12 CLA ? GO:0009416 ... Q3B9U7 36951548
    42356 8hg3:S (2.94) BS13 CLA ? GO:0009416 ... Q3B9U7 36951548
    42357 8hg3:T (2.94) BS04 CLA ? GO:0009416 ... Q3B9U7 36951548
    42358 8hg3:T (2.94) BS05 CLA ? GO:0009416 ... Q3B9U7 36951548
    42359 8hg3:T (2.94) BS06 CLA ? GO:0009416 ... Q3B9U7 36951548
    42360 8hg3:T (2.94) BS12 CLA ? GO:0009416 ... Q3B9U7 36951548
    42361 8hg3:T (2.94) BS13 CLA ? GO:0009416 ... Q3B9U7 36951548
    42362 8hg3:T (2.94) BS14 CLA ? GO:0009416 ... Q3B9U7 36951548
    42363 8hg3:T (2.94) BS15 CLA ? GO:0009416 ... Q3B9U7 36951548
    42364 8hg3:T (2.94) BS16 CLA ? GO:0009416 ... Q3B9U7 36951548
    42365 8hg3:U (2.94) BS06 CLA ? GO:0009416 ... Q3B9U7 36951548
    42366 8hg3:U (2.94) BS07 CLA ? GO:0009416 ... Q3B9U7 36951548
    42367 8hg3:U (2.94) BS08 CLA ? GO:0009416 ... Q3B9U7 36951548
    42368 8hg3:U (2.94) BS13 CLA ? GO:0009416 ... Q3B9U7 36951548
    42369 8hg3:U (2.94) BS14 CLA ? GO:0009416 ... Q3B9U7 36951548
    42370 8hg3:U (2.94) BS15 CLA ? GO:0009416 ... Q3B9U7 36951548
    42371 8hg3:U (2.94) BS16 CLA ? GO:0009416 ... Q3B9U7 36951548
    42372 8hg3:U (2.94) BS17 CLA ? GO:0009416 ... Q3B9U7 36951548
    42373 8hg5:P (2.9) BS01 CLA ? GO:0009416 ... Q3B9U7 36951548
    42374 8hg5:P (2.9) BS02 CLA ? GO:0009416 ... Q3B9U7 36951548
    42375 8hg5:P (2.9) BS08 CLA ? GO:0009416 ... Q3B9U7 36951548
    42376 8hg5:P (2.9) BS09 CLA ? GO:0009416 ... Q3B9U7 36951548
    42377 8hg5:P (2.9) BS10 CLA ? GO:0009416 ... Q3B9U7 36951548
    42378 8hg5:P (2.9) BS11 CLA ? GO:0009416 ... Q3B9U7 36951548
    42379 8hg5:P (2.9) BS12 CLA ? GO:0009416 ... Q3B9U7 36951548
    42380 8hg5:P (2.9) BS22 CLA ? GO:0009416 ... Q3B9U7 36951548
    42381 8hg5:Q (2.9) BS03 CLA ? GO:0009765 ... A0A090LYE8 36951548
    42382 8hg5:Q (2.9) BS04 CLA ? GO:0009765 ... A0A090LYE8 36951548
    42383 8hg5:Q (2.9) BS05 CLA ? GO:0009765 ... A0A090LYE8 36951548
    42384 8hg5:Q (2.9) BS10 CLA ? GO:0009765 ... A0A090LYE8 36951548
    42385 8hg5:Q (2.9) BS11 CLA ? GO:0009765 ... A0A090LYE8 36951548
    42386 8hg5:Q (2.9) BS12 CLA ? GO:0009765 ... A0A090LYE8 36951548
    42387 8hg5:Q (2.9) BS13 CLA ? GO:0009765 ... A0A090LYE8 36951548
    42388 8hg5:Q (2.9) BS14 CLA ? GO:0009765 ... A0A090LYE8 36951548
    42389 8hg5:R (2.9) BS06 CLA ? GO:0009416 ... Q3B9U7 36951548
    42390 8hg5:R (2.9) BS07 CLA ? GO:0009416 ... Q3B9U7 36951548
    42391 8hg5:R (2.9) BS08 CLA ? GO:0009416 ... Q3B9U7 36951548
    42392 8hg5:R (2.9) BS14 CLA ? GO:0009416 ... Q3B9U7 36951548
    42393 8hg5:R (2.9) BS15 CLA ? GO:0009416 ... Q3B9U7 36951548
    42394 8hg5:R (2.9) BS16 CLA ? GO:0009416 ... Q3B9U7 36951548
    42395 8hg5:R (2.9) BS17 CLA ? GO:0009416 ... Q3B9U7 36951548
    42396 8hg5:R (2.9) BS18 CLA ? GO:0009416 ... Q3B9U7 36951548
    42397 8hg6:V (3.44) BS01 CLA ? GO:0009416 ... Q3B9U7 36951548
    42398 8hg6:V (3.44) BS02 CLA ? GO:0009416 ... Q3B9U7 36951548
    42399 8hg6:V (3.44) BS03 CLA ? GO:0009416 ... Q3B9U7 36951548
    42400 8hg6:V (3.44) BS09 CLA ? GO:0009416 ... Q3B9U7 36951548

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218