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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    42001 8gn1:D (2.1) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42002 8gn1:D (2.1) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42003 8gn1:D (2.1) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42004 8gn1:D (2.1) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42005 8gn1:D (2.1) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42006 8gn1:H (2.1) BS01 CLA ? GO:0009523 ... P19052 37209822
    42007 8gn1:H (2.1) BS02 CLA ? GO:0009523 ... P19052 37209822
    42008 8gn1:H (2.1) BS03 CLA ? GO:0009523 ... P19052 37209822
    42009 8gn1:H (2.1) BS04 CLA ? GO:0009523 ... P19052 37209822
    42010 8gn1:I (2.1) BS01 CLA ? GO:0005737 ... P12240 37209822
    42011 8gn1:K (2.1) BS01 CLA ? GO:0005737 ... P19054 37209822
    42012 8gn1:K (2.1) BS02 CLA ? GO:0005737 ... P19054 37209822
    42013 8gn1:Y (2.1) BS01 CLA ? GO:0009523 ... D0VWR3 37209822
    42014 8gn1:Z (2.1) BS01 CLA ? GO:0009523 ... D0VWR5 37209822
    42015 8gn1:a (2.1) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42016 8gn1:a (2.1) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42017 8gn1:a (2.1) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42018 8gn1:a (2.1) BS11 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42019 8gn1:b (2.1) BS01 CLA ? GO:0009521 ... D0VWR1 37209822
    42020 8gn1:b (2.1) BS02 CLA ? GO:0009521 ... D0VWR1 37209822
    42021 8gn1:b (2.1) BS03 CLA ? GO:0009521 ... D0VWR1 37209822
    42022 8gn1:b (2.1) BS04 CLA ? GO:0009521 ... D0VWR1 37209822
    42023 8gn1:b (2.1) BS05 CLA ? GO:0009521 ... D0VWR1 37209822
    42024 8gn1:b (2.1) BS06 CLA ? GO:0009521 ... D0VWR1 37209822
    42025 8gn1:b (2.1) BS07 CLA ? GO:0009521 ... D0VWR1 37209822
    42026 8gn1:b (2.1) BS08 CLA ? GO:0009521 ... D0VWR1 37209822
    42027 8gn1:b (2.1) BS09 CLA ? GO:0009521 ... D0VWR1 37209822
    42028 8gn1:b (2.1) BS10 CLA ? GO:0009521 ... D0VWR1 37209822
    42029 8gn1:b (2.1) BS11 CLA ? GO:0009521 ... D0VWR1 37209822
    42030 8gn1:b (2.1) BS12 CLA ? GO:0009521 ... D0VWR1 37209822
    42031 8gn1:b (2.1) BS13 CLA ? GO:0009521 ... D0VWR1 37209822
    42032 8gn1:b (2.1) BS14 CLA ? GO:0009521 ... D0VWR1 37209822
    42033 8gn1:b (2.1) BS15 CLA ? GO:0009521 ... D0VWR1 37209822
    42034 8gn1:b (2.1) BS16 CLA ? GO:0009521 ... D0VWR1 37209822
    42035 8gn1:c (2.1) BS03 CLA ? GO:0005737 ... D0VWR7 37209822
    42036 8gn1:c (2.1) BS04 CLA ? GO:0005737 ... D0VWR7 37209822
    42037 8gn1:c (2.1) BS05 CLA ? GO:0005737 ... D0VWR7 37209822
    42038 8gn1:c (2.1) BS06 CLA ? GO:0005737 ... D0VWR7 37209822
    42039 8gn1:c (2.1) BS07 CLA ? GO:0005737 ... D0VWR7 37209822
    42040 8gn1:c (2.1) BS08 CLA ? GO:0005737 ... D0VWR7 37209822
    42041 8gn1:c (2.1) BS09 CLA ? GO:0005737 ... D0VWR7 37209822
    42042 8gn1:c (2.1) BS10 CLA ? GO:0005737 ... D0VWR7 37209822
    42043 8gn1:c (2.1) BS11 CLA ? GO:0005737 ... D0VWR7 37209822
    42044 8gn1:c (2.1) BS12 CLA ? GO:0005737 ... D0VWR7 37209822
    42045 8gn1:c (2.1) BS13 CLA ? GO:0005737 ... D0VWR7 37209822
    42046 8gn1:c (2.1) BS14 CLA ? GO:0005737 ... D0VWR7 37209822
    42047 8gn1:c (2.1) BS15 CLA ? GO:0005737 ... D0VWR7 37209822
    42048 8gn1:d (2.1) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42049 8gn1:d (2.1) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42050 8gn1:d (2.1) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42051 8gn1:d (2.1) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42052 8gn1:d (2.1) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42053 8gn1:h (2.1) BS01 CLA ? GO:0009523 ... P19052 37209822
    42054 8gn1:h (2.1) BS02 CLA ? GO:0009523 ... P19052 37209822
    42055 8gn1:h (2.1) BS03 CLA ? GO:0009523 ... P19052 37209822
    42056 8gn1:h (2.1) BS04 CLA ? GO:0009523 ... P19052 37209822
    42057 8gn1:i (2.1) BS01 CLA ? GO:0005737 ... P12240 37209822
    42058 8gn1:k (2.1) BS02 CLA ? GO:0005737 ... P19054 37209822
    42059 8gn1:k (2.1) BS03 CLA ? GO:0005737 ... P19054 37209822
    42060 8gn1:x (2.1) BS01 CLA ? GO:0009523 ... D0VWR4 37209822
    42061 8gn2:A (1.95) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42062 8gn2:A (1.95) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42063 8gn2:A (1.95) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42064 8gn2:A (1.95) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42065 8gn2:A (1.95) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42066 8gn2:B (1.95) BS01 CLA ? GO:0009521 ... D0VWR1 37209822
    42067 8gn2:B (1.95) BS02 CLA ? GO:0009521 ... D0VWR1 37209822
    42068 8gn2:B (1.95) BS03 CLA ? GO:0009521 ... D0VWR1 37209822
    42069 8gn2:B (1.95) BS04 CLA ? GO:0009521 ... D0VWR1 37209822
    42070 8gn2:B (1.95) BS05 CLA ? GO:0009521 ... D0VWR1 37209822
    42071 8gn2:B (1.95) BS06 CLA ? GO:0009521 ... D0VWR1 37209822
    42072 8gn2:B (1.95) BS07 CLA ? GO:0009521 ... D0VWR1 37209822
    42073 8gn2:B (1.95) BS08 CLA ? GO:0009521 ... D0VWR1 37209822
    42074 8gn2:B (1.95) BS09 CLA ? GO:0009521 ... D0VWR1 37209822
    42075 8gn2:B (1.95) BS10 CLA ? GO:0009521 ... D0VWR1 37209822
    42076 8gn2:B (1.95) BS11 CLA ? GO:0009521 ... D0VWR1 37209822
    42077 8gn2:B (1.95) BS12 CLA ? GO:0009521 ... D0VWR1 37209822
    42078 8gn2:B (1.95) BS13 CLA ? GO:0009521 ... D0VWR1 37209822
    42079 8gn2:B (1.95) BS14 CLA ? GO:0009521 ... D0VWR1 37209822
    42080 8gn2:B (1.95) BS15 CLA ? GO:0009521 ... D0VWR1 37209822
    42081 8gn2:B (1.95) BS16 CLA ? GO:0009521 ... D0VWR1 37209822
    42082 8gn2:C (1.95) BS02 CLA ? GO:0005737 ... D0VWR7 37209822
    42083 8gn2:C (1.95) BS03 CLA ? GO:0005737 ... D0VWR7 37209822
    42084 8gn2:C (1.95) BS04 CLA ? GO:0005737 ... D0VWR7 37209822
    42085 8gn2:C (1.95) BS05 CLA ? GO:0005737 ... D0VWR7 37209822
    42086 8gn2:C (1.95) BS06 CLA ? GO:0005737 ... D0VWR7 37209822
    42087 8gn2:C (1.95) BS07 CLA ? GO:0005737 ... D0VWR7 37209822
    42088 8gn2:C (1.95) BS08 CLA ? GO:0005737 ... D0VWR7 37209822
    42089 8gn2:C (1.95) BS09 CLA ? GO:0005737 ... D0VWR7 37209822
    42090 8gn2:C (1.95) BS10 CLA ? GO:0005737 ... D0VWR7 37209822
    42091 8gn2:C (1.95) BS11 CLA ? GO:0005737 ... D0VWR7 37209822
    42092 8gn2:C (1.95) BS12 CLA ? GO:0005737 ... D0VWR7 37209822
    42093 8gn2:C (1.95) BS13 CLA ? GO:0005737 ... D0VWR7 37209822
    42094 8gn2:C (1.95) BS14 CLA ? GO:0005737 ... D0VWR7 37209822
    42095 8gn2:D (1.95) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42096 8gn2:D (1.95) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42097 8gn2:D (1.95) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42098 8gn2:D (1.95) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42099 8gn2:D (1.95) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42100 8gn2:H (1.95) BS01 CLA ? GO:0009523 ... P19052 37209822
    42101 8gn2:H (1.95) BS02 CLA ? GO:0009523 ... P19052 37209822
    42102 8gn2:H (1.95) BS03 CLA ? GO:0009523 ... P19052 37209822
    42103 8gn2:I (1.95) BS01 CLA ? GO:0005737 ... P12240 37209822
    42104 8gn2:K (1.95) BS02 CLA ? GO:0005737 ... P19054 37209822
    42105 8gn2:K (1.95) BS03 CLA ? GO:0005737 ... P19054 37209822
    42106 8gn2:a (1.95) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42107 8gn2:a (1.95) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42108 8gn2:a (1.95) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42109 8gn2:a (1.95) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42110 8gn2:a (1.95) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 37209822
    42111 8gn2:b (1.95) BS01 CLA ? GO:0009521 ... D0VWR1 37209822
    42112 8gn2:b (1.95) BS02 CLA ? GO:0009521 ... D0VWR1 37209822
    42113 8gn2:b (1.95) BS03 CLA ? GO:0009521 ... D0VWR1 37209822
    42114 8gn2:b (1.95) BS04 CLA ? GO:0009521 ... D0VWR1 37209822
    42115 8gn2:b (1.95) BS05 CLA ? GO:0009521 ... D0VWR1 37209822
    42116 8gn2:b (1.95) BS06 CLA ? GO:0009521 ... D0VWR1 37209822
    42117 8gn2:b (1.95) BS07 CLA ? GO:0009521 ... D0VWR1 37209822
    42118 8gn2:b (1.95) BS08 CLA ? GO:0009521 ... D0VWR1 37209822
    42119 8gn2:b (1.95) BS09 CLA ? GO:0009521 ... D0VWR1 37209822
    42120 8gn2:b (1.95) BS10 CLA ? GO:0009521 ... D0VWR1 37209822
    42121 8gn2:b (1.95) BS11 CLA ? GO:0009521 ... D0VWR1 37209822
    42122 8gn2:b (1.95) BS12 CLA ? GO:0009521 ... D0VWR1 37209822
    42123 8gn2:b (1.95) BS13 CLA ? GO:0009521 ... D0VWR1 37209822
    42124 8gn2:b (1.95) BS14 CLA ? GO:0009521 ... D0VWR1 37209822
    42125 8gn2:b (1.95) BS15 CLA ? GO:0009521 ... D0VWR1 37209822
    42126 8gn2:b (1.95) BS16 CLA ? GO:0009521 ... D0VWR1 37209822
    42127 8gn2:c (1.95) BS03 CLA ? GO:0005737 ... D0VWR7 37209822
    42128 8gn2:c (1.95) BS04 CLA ? GO:0005737 ... D0VWR7 37209822
    42129 8gn2:c (1.95) BS05 CLA ? GO:0005737 ... D0VWR7 37209822
    42130 8gn2:c (1.95) BS06 CLA ? GO:0005737 ... D0VWR7 37209822
    42131 8gn2:c (1.95) BS07 CLA ? GO:0005737 ... D0VWR7 37209822
    42132 8gn2:c (1.95) BS08 CLA ? GO:0005737 ... D0VWR7 37209822
    42133 8gn2:c (1.95) BS09 CLA ? GO:0005737 ... D0VWR7 37209822
    42134 8gn2:c (1.95) BS10 CLA ? GO:0005737 ... D0VWR7 37209822
    42135 8gn2:c (1.95) BS11 CLA ? GO:0005737 ... D0VWR7 37209822
    42136 8gn2:c (1.95) BS12 CLA ? GO:0005737 ... D0VWR7 37209822
    42137 8gn2:c (1.95) BS13 CLA ? GO:0005737 ... D0VWR7 37209822
    42138 8gn2:c (1.95) BS14 CLA ? GO:0005737 ... D0VWR7 37209822
    42139 8gn2:c (1.95) BS15 CLA ? GO:0005737 ... D0VWR7 37209822
    42140 8gn2:d (1.95) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42141 8gn2:d (1.95) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42142 8gn2:d (1.95) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42143 8gn2:d (1.95) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42144 8gn2:d (1.95) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 37209822
    42145 8gn2:h (1.95) BS01 CLA ? GO:0009523 ... P19052 37209822
    42146 8gn2:h (1.95) BS02 CLA ? GO:0009523 ... P19052 37209822
    42147 8gn2:h (1.95) BS03 CLA ? GO:0009523 ... P19052 37209822
    42148 8gn2:i (1.95) BS01 CLA ? GO:0005737 ... P12240 37209822
    42149 8gn2:k (1.95) BS02 CLA ? GO:0005737 ... P19054 37209822
    42150 8gn2:k (1.95) BS03 CLA ? GO:0005737 ... P19054 37209822
    42151 8gn2:x (1.95) BS01 CLA ? GO:0009523 ... D0VWR4 37209822
    42152 8h2u:0 (3.4) BS01 CLA ? GO:0009416 ... Q05093 37270022
    42153 8h2u:0 (3.4) BS02 CLA ? GO:0009416 ... Q05093 37270022
    42154 8h2u:0 (3.4) BS03 CLA ? GO:0009416 ... Q05093 37270022
    42155 8h2u:0 (3.4) BS04 CLA ? GO:0009416 ... Q05093 37270022
    42156 8h2u:0 (3.4) BS05 CLA ? GO:0009416 ... Q05093 37270022
    42157 8h2u:0 (3.4) BS06 CLA ? GO:0009416 ... Q05093 37270022
    42158 8h2u:0 (3.4) BS07 CLA ? GO:0009416 ... Q05093 37270022
    42159 8h2u:0 (3.4) BS08 CLA ? GO:0009416 ... Q05093 37270022
    42160 8h2u:0 (3.4) BS09 CLA ? GO:0009416 ... Q05093 37270022
    42161 8h2u:0 (3.4) BS12 CLA ? GO:0009416 ... Q05093 37270022
    42162 8h2u:1 (3.4) BS01 CLA ? GO:0009416 ... Q05093 37270022
    42163 8h2u:1 (3.4) BS02 CLA ? GO:0009416 ... Q05093 37270022
    42164 8h2u:1 (3.4) BS03 CLA ? GO:0009416 ... Q05093 37270022
    42165 8h2u:1 (3.4) BS04 CLA ? GO:0009416 ... Q05093 37270022
    42166 8h2u:1 (3.4) BS05 CLA ? GO:0009416 ... Q05093 37270022
    42167 8h2u:1 (3.4) BS06 CLA ? GO:0009416 ... Q05093 37270022
    42168 8h2u:1 (3.4) BS07 CLA ? GO:0009416 ... Q05093 37270022
    42169 8h2u:1 (3.4) BS08 CLA ? GO:0009416 ... Q05093 37270022
    42170 8h2u:1 (3.4) BS11 CLA ? GO:0009416 ... Q05093 37270022
    42171 8h2u:1 (3.4) BS13 CLA ? GO:0009416 ... Q05093 37270022
    42172 8h2u:3 (3.4) BS01 CLA N/A GO:0009765 ... N/A 37270022
    42173 8h2u:3 (3.4) BS02 CLA N/A GO:0009765 ... N/A 37270022
    42174 8h2u:3 (3.4) BS04 CLA N/A GO:0009765 ... N/A 37270022
    42175 8h2u:3 (3.4) BS05 CLA N/A GO:0009765 ... N/A 37270022
    42176 8h2u:3 (3.4) BS06 CLA N/A GO:0009765 ... N/A 37270022
    42177 8h2u:3 (3.4) BS07 CLA N/A GO:0009765 ... N/A 37270022
    42178 8h2u:3 (3.4) BS08 CLA N/A GO:0009765 ... N/A 37270022
    42179 8h2u:3 (3.4) BS09 CLA N/A GO:0009765 ... N/A 37270022
    42180 8h2u:3 (3.4) BS10 CLA N/A GO:0009765 ... N/A 37270022
    42181 8h2u:3 (3.4) BS11 CLA N/A GO:0009765 ... N/A 37270022
    42182 8h2u:3 (3.4) BS12 CLA N/A GO:0009765 ... N/A 37270022
    42183 8h2u:3 (3.4) BS14 CLA N/A GO:0009765 ... N/A 37270022
    42184 8h2u:3 (3.4) BS15 CLA N/A GO:0009765 ... N/A 37270022
    42185 8h2u:4 (3.4) BS01 CLA ? GO:0009416 ... Q75VZ0 37270022
    42186 8h2u:4 (3.4) BS02 CLA ? GO:0009416 ... Q75VZ0 37270022
    42187 8h2u:4 (3.4) BS03 CLA ? GO:0009416 ... Q75VZ0 37270022
    42188 8h2u:4 (3.4) BS04 CLA ? GO:0009416 ... Q75VZ0 37270022
    42189 8h2u:4 (3.4) BS05 CLA ? GO:0009416 ... Q75VZ0 37270022
    42190 8h2u:4 (3.4) BS06 CLA ? GO:0009416 ... Q75VZ0 37270022
    42191 8h2u:4 (3.4) BS07 CLA ? GO:0009416 ... Q75VZ0 37270022
    42192 8h2u:4 (3.4) BS08 CLA ? GO:0009416 ... Q75VZ0 37270022
    42193 8h2u:4 (3.4) BS09 CLA ? GO:0009416 ... Q75VZ0 37270022
    42194 8h2u:4 (3.4) BS12 CLA ? GO:0009416 ... Q75VZ0 37270022
    42195 8h2u:4 (3.4) BS15 CLA ? GO:0009416 ... Q75VZ0 37270022
    42196 8h2u:5 (3.4) BS01 CLA ? GO:0009416 ... Q75VY8 37270022
    42197 8h2u:5 (3.4) BS02 CLA ? GO:0009416 ... Q75VY8 37270022
    42198 8h2u:5 (3.4) BS03 CLA ? GO:0009416 ... Q75VY8 37270022
    42199 8h2u:5 (3.4) BS04 CLA ? GO:0009416 ... Q75VY8 37270022
    42200 8h2u:5 (3.4) BS05 CLA ? GO:0009416 ... Q75VY8 37270022
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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