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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40401 8bd3:q (2.73) BS06 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40402 8bd3:q (2.73) BS07 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40403 8bd3:q (2.73) BS08 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40404 8bd3:q (2.73) BS14 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40405 8bd3:q (2.73) BS15 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40406 8bd3:q (2.73) BS16 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40407 8bd3:q (2.73) BS17 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40408 8bd3:q (2.73) BS18 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40409 8bd3:r (2.73) BS01 CLA N/A GO:0009765 ... N/A 37566050
    40410 8bd3:r (2.73) BS03 CLA N/A GO:0009765 ... N/A 37566050
    40411 8bd3:r (2.73) BS04 CLA N/A GO:0009765 ... N/A 37566050
    40412 8bd3:r (2.73) BS05 CLA N/A GO:0009765 ... N/A 37566050
    40413 8bd3:r (2.73) BS06 CLA N/A GO:0009765 ... N/A 37566050
    40414 8bd3:r (2.73) BS07 CLA N/A GO:0009765 ... N/A 37566050
    40415 8bd3:r (2.73) BS11 CLA N/A GO:0009765 ... N/A 37566050
    40416 8bd3:r (2.73) BS12 CLA N/A GO:0009765 ... N/A 37566050
    40417 8bd3:r (2.73) BS13 CLA N/A GO:0009765 ... N/A 37566050
    40418 8bd3:r (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    40419 8bd3:r (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    40420 8bd3:r (2.73) BS16 CLA N/A GO:0009765 ... N/A 37566050
    40421 8bd3:s (2.73) BS01 CLA N/A GO:0009765 ... N/A 37566050
    40422 8bd3:s (2.73) BS04 CLA N/A GO:0009765 ... N/A 37566050
    40423 8bd3:s (2.73) BS05 CLA N/A GO:0009765 ... N/A 37566050
    40424 8bd3:s (2.73) BS06 CLA N/A GO:0009765 ... N/A 37566050
    40425 8bd3:s (2.73) BS07 CLA N/A GO:0009765 ... N/A 37566050
    40426 8bd3:s (2.73) BS11 CLA N/A GO:0009765 ... N/A 37566050
    40427 8bd3:s (2.73) BS12 CLA N/A GO:0009765 ... N/A 37566050
    40428 8bd3:s (2.73) BS13 CLA N/A GO:0009765 ... N/A 37566050
    40429 8bd3:s (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    40430 8bd3:s (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    40431 8bd3:s (2.73) BS16 CLA N/A GO:0009765 ... N/A 37566050
    40432 8bd3:s (2.73) BS17 CLA N/A GO:0009765 ... N/A 37566050
    40433 8bd3:w (2.73) BS01 CLA N/A GO:0009507 ... N/A 37566050
    40434 8bd3:y (2.73) BS05 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40435 8bd3:y (2.73) BS06 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40436 8bd3:y (2.73) BS07 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40437 8bd3:y (2.73) BS13 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40438 8bd3:y (2.73) BS14 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40439 8bd3:y (2.73) BS15 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40440 8bd3:y (2.73) BS16 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40441 8bd3:y (2.73) BS17 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40442 8bd3:y (2.73) BS18 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40443 8c29:A (2.785) BS02 CLA 1.10.3.9 GO:0005506 ... P50155 37550369
    40444 8c29:A (2.785) BS03 CLA 1.10.3.9 GO:0005506 ... P50155 37550369
    40445 8c29:A (2.785) BS04 CLA 1.10.3.9 GO:0005506 ... P50155 37550369
    40446 8c29:A (2.785) BS06 CLA 1.10.3.9 GO:0005506 ... P50155 37550369
    40447 8c29:A (2.785) BS07 CLA 1.10.3.9 GO:0005506 ... P50155 37550369
    40448 8c29:B (2.785) BS02 CLA ? GO:0009507 ... R4ZGX1 37550369
    40449 8c29:B (2.785) BS03 CLA ? GO:0009507 ... R4ZGX1 37550369
    40450 8c29:B (2.785) BS04 CLA ? GO:0009507 ... R4ZGX1 37550369
    40451 8c29:B (2.785) BS05 CLA ? GO:0009507 ... R4ZGX1 37550369
    40452 8c29:B (2.785) BS06 CLA ? GO:0009507 ... R4ZGX1 37550369
    40453 8c29:B (2.785) BS07 CLA ? GO:0009507 ... R4ZGX1 37550369
    40454 8c29:B (2.785) BS08 CLA ? GO:0009507 ... R4ZGX1 37550369
    40455 8c29:B (2.785) BS09 CLA ? GO:0009507 ... R4ZGX1 37550369
    40456 8c29:B (2.785) BS10 CLA ? GO:0009507 ... R4ZGX1 37550369
    40457 8c29:B (2.785) BS11 CLA ? GO:0009507 ... R4ZGX1 37550369
    40458 8c29:B (2.785) BS12 CLA ? GO:0009507 ... R4ZGX1 37550369
    40459 8c29:B (2.785) BS13 CLA ? GO:0009507 ... R4ZGX1 37550369
    40460 8c29:B (2.785) BS14 CLA ? GO:0009507 ... R4ZGX1 37550369
    40461 8c29:B (2.785) BS15 CLA ? GO:0009507 ... R4ZGX1 37550369
    40462 8c29:B (2.785) BS16 CLA ? GO:0009507 ... R4ZGX1 37550369
    40463 8c29:B (2.785) BS17 CLA ? GO:0009507 ... R4ZGX1 37550369
    40464 8c29:C (2.785) BS01 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40465 8c29:C (2.785) BS02 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40466 8c29:C (2.785) BS03 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40467 8c29:C (2.785) BS04 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40468 8c29:C (2.785) BS05 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40469 8c29:C (2.785) BS06 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40470 8c29:C (2.785) BS07 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40471 8c29:C (2.785) BS08 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40472 8c29:C (2.785) BS09 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40473 8c29:C (2.785) BS10 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40474 8c29:C (2.785) BS11 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40475 8c29:C (2.785) BS12 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40476 8c29:C (2.785) BS13 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40477 8c29:C (2.785) BS18 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40478 8c29:D (2.785) BS02 CLA 1.10.3.9 GO:0005506 ... R4ZGX6 37550369
    40479 8c29:D (2.785) BS03 CLA 1.10.3.9 GO:0005506 ... R4ZGX6 37550369
    40480 8c29:D (2.785) BS05 CLA 1.10.3.9 GO:0005506 ... R4ZGX6 37550369
    40481 8c29:D (2.785) BS08 CLA 1.10.3.9 GO:0005506 ... R4ZGX6 37550369
    40482 8c29:D (2.785) BS09 CLA 1.10.3.9 GO:0005506 ... R4ZGX6 37550369
    40483 8c29:G (2.785) BS02 CLA ? GO:0009416 ... Q40771 37550369
    40484 8c29:G (2.785) BS03 CLA ? GO:0009416 ... Q40771 37550369
    40485 8c29:G (2.785) BS09 CLA ? GO:0009416 ... Q40771 37550369
    40486 8c29:G (2.785) BS10 CLA ? GO:0009416 ... Q40771 37550369
    40487 8c29:G (2.785) BS11 CLA ? GO:0009416 ... Q40771 37550369
    40488 8c29:G (2.785) BS12 CLA ? GO:0009416 ... Q40771 37550369
    40489 8c29:G (2.785) BS13 CLA ? GO:0009416 ... Q40771 37550369
    40490 8c29:H (2.785) BS01 CLA ? GO:0009507 ... R4ZGS7 37550369
    40491 8c29:H (2.785) BS02 CLA ? GO:0009507 ... R4ZGS7 37550369
    40492 8c29:H (2.785) BS03 CLA ? GO:0009507 ... R4ZGS7 37550369
    40493 8c29:I (2.785) BS01 CLA ? GO:0005737 ... R4ZGS4 37550369
    40494 8c29:K (2.785) BS01 CLA ? GO:0005737 ... R4ZGX8 37550369
    40495 8c29:N (2.785) BS01 CLA ? GO:0009416 ... Q40771 37550369
    40496 8c29:N (2.785) BS04 CLA ? GO:0009416 ... Q40771 37550369
    40497 8c29:N (2.785) BS05 CLA ? GO:0009416 ... Q40771 37550369
    40498 8c29:N (2.785) BS06 CLA ? GO:0009416 ... Q40771 37550369
    40499 8c29:N (2.785) BS12 CLA ? GO:0009416 ... Q40771 37550369
    40500 8c29:N (2.785) BS13 CLA ? GO:0009416 ... Q40771 37550369
    40501 8c29:N (2.785) BS14 CLA ? GO:0009416 ... Q40771 37550369
    40502 8c29:N (2.785) BS15 CLA ? GO:0009416 ... Q40771 37550369
    40503 8c29:N (2.785) BS16 CLA ? GO:0009416 ... Q40771 37550369
    40504 8c29:R (2.785) BS01 CLA ? GO:0009765 ... A9NKX0 37550369
    40505 8c29:R (2.785) BS02 CLA ? GO:0009765 ... A9NKX0 37550369
    40506 8c29:R (2.785) BS03 CLA ? GO:0009765 ... A9NKX0 37550369
    40507 8c29:R (2.785) BS04 CLA ? GO:0009765 ... A9NKX0 37550369
    40508 8c29:R (2.785) BS08 CLA ? GO:0009765 ... A9NKX0 37550369
    40509 8c29:R (2.785) BS09 CLA ? GO:0009765 ... A9NKX0 37550369
    40510 8c29:R (2.785) BS10 CLA ? GO:0009765 ... A9NKX0 37550369
    40511 8c29:R (2.785) BS11 CLA ? GO:0009765 ... A9NKX0 37550369
    40512 8c29:R (2.785) BS12 CLA ? GO:0009765 ... A9NKX0 37550369
    40513 8c29:S (2.785) BS01 CLA ? GO:0009416 ... A9NKM0 37550369
    40514 8c29:S (2.785) BS04 CLA ? GO:0009416 ... A9NKM0 37550369
    40515 8c29:S (2.785) BS05 CLA ? GO:0009416 ... A9NKM0 37550369
    40516 8c29:S (2.785) BS06 CLA ? GO:0009416 ... A9NKM0 37550369
    40517 8c29:S (2.785) BS10 CLA ? GO:0009416 ... A9NKM0 37550369
    40518 8c29:S (2.785) BS11 CLA ? GO:0009416 ... A9NKM0 37550369
    40519 8c29:S (2.785) BS12 CLA ? GO:0009416 ... A9NKM0 37550369
    40520 8c29:S (2.785) BS13 CLA ? GO:0009416 ... A9NKM0 37550369
    40521 8c29:S (2.785) BS14 CLA ? GO:0009416 ... A9NKM0 37550369
    40522 8c29:S (2.785) BS15 CLA ? GO:0009416 ... A9NKM0 37550369
    40523 8c29:Y (2.785) BS06 CLA ? GO:0009416 ... Q40771 37550369
    40524 8c29:Y (2.785) BS07 CLA ? GO:0009416 ... Q40771 37550369
    40525 8c29:Y (2.785) BS12 CLA ? GO:0009416 ... Q40771 37550369
    40526 8c29:Y (2.785) BS13 CLA ? GO:0009416 ... Q40771 37550369
    40527 8c29:Y (2.785) BS14 CLA ? GO:0009416 ... Q40771 37550369
    40528 8c29:Y (2.785) BS15 CLA ? GO:0009416 ... Q40771 37550369
    40529 8c29:Y (2.785) BS16 CLA ? GO:0009416 ... Q40771 37550369
    40530 8c29:a (2.785) BS02 CLA 1.10.3.9 GO:0005506 ... P50155 37550369
    40531 8c29:a (2.785) BS03 CLA 1.10.3.9 GO:0005506 ... P50155 37550369
    40532 8c29:a (2.785) BS04 CLA 1.10.3.9 GO:0005506 ... P50155 37550369
    40533 8c29:a (2.785) BS06 CLA 1.10.3.9 GO:0005506 ... P50155 37550369
    40534 8c29:a (2.785) BS07 CLA 1.10.3.9 GO:0005506 ... P50155 37550369
    40535 8c29:b (2.785) BS02 CLA ? GO:0009507 ... R4ZGX1 37550369
    40536 8c29:b (2.785) BS03 CLA ? GO:0009507 ... R4ZGX1 37550369
    40537 8c29:b (2.785) BS04 CLA ? GO:0009507 ... R4ZGX1 37550369
    40538 8c29:b (2.785) BS05 CLA ? GO:0009507 ... R4ZGX1 37550369
    40539 8c29:b (2.785) BS06 CLA ? GO:0009507 ... R4ZGX1 37550369
    40540 8c29:b (2.785) BS07 CLA ? GO:0009507 ... R4ZGX1 37550369
    40541 8c29:b (2.785) BS08 CLA ? GO:0009507 ... R4ZGX1 37550369
    40542 8c29:b (2.785) BS09 CLA ? GO:0009507 ... R4ZGX1 37550369
    40543 8c29:b (2.785) BS10 CLA ? GO:0009507 ... R4ZGX1 37550369
    40544 8c29:b (2.785) BS11 CLA ? GO:0009507 ... R4ZGX1 37550369
    40545 8c29:b (2.785) BS12 CLA ? GO:0009507 ... R4ZGX1 37550369
    40546 8c29:b (2.785) BS13 CLA ? GO:0009507 ... R4ZGX1 37550369
    40547 8c29:b (2.785) BS14 CLA ? GO:0009507 ... R4ZGX1 37550369
    40548 8c29:b (2.785) BS15 CLA ? GO:0009507 ... R4ZGX1 37550369
    40549 8c29:b (2.785) BS16 CLA ? GO:0009507 ... R4ZGX1 37550369
    40550 8c29:b (2.785) BS17 CLA ? GO:0009507 ... R4ZGX1 37550369
    40551 8c29:b (2.785) BS19 CLA ? GO:0009507 ... R4ZGX1 37550369
    40552 8c29:c (2.785) BS01 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40553 8c29:c (2.785) BS02 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40554 8c29:c (2.785) BS03 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40555 8c29:c (2.785) BS04 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40556 8c29:c (2.785) BS05 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40557 8c29:c (2.785) BS06 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40558 8c29:c (2.785) BS07 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40559 8c29:c (2.785) BS08 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40560 8c29:c (2.785) BS09 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40561 8c29:c (2.785) BS10 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40562 8c29:c (2.785) BS11 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40563 8c29:c (2.785) BS12 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40564 8c29:c (2.785) BS13 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40565 8c29:c (2.785) BS19 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40566 8c29:c (2.785) BS21 CLA ? GO:0005737 ... R4ZGZ0 37550369
    40567 8c29:d (2.785) BS02 CLA 1.10.3.9 GO:0005506 ... R4ZGX6 37550369
    40568 8c29:d (2.785) BS03 CLA 1.10.3.9 GO:0005506 ... R4ZGX6 37550369
    40569 8c29:d (2.785) BS05 CLA 1.10.3.9 GO:0005506 ... R4ZGX6 37550369
    40570 8c29:d (2.785) BS08 CLA 1.10.3.9 GO:0005506 ... R4ZGX6 37550369
    40571 8c29:d (2.785) BS09 CLA 1.10.3.9 GO:0005506 ... R4ZGX6 37550369
    40572 8c29:g (2.785) BS02 CLA ? GO:0009416 ... Q40771 37550369
    40573 8c29:g (2.785) BS03 CLA ? GO:0009416 ... Q40771 37550369
    40574 8c29:g (2.785) BS04 CLA ? GO:0009416 ... Q40771 37550369
    40575 8c29:g (2.785) BS10 CLA ? GO:0009416 ... Q40771 37550369
    40576 8c29:g (2.785) BS11 CLA ? GO:0009416 ... Q40771 37550369
    40577 8c29:g (2.785) BS12 CLA ? GO:0009416 ... Q40771 37550369
    40578 8c29:g (2.785) BS13 CLA ? GO:0009416 ... Q40771 37550369
    40579 8c29:g (2.785) BS14 CLA ? GO:0009416 ... Q40771 37550369
    40580 8c29:h (2.785) BS01 CLA ? GO:0009507 ... R4ZGS7 37550369
    40581 8c29:h (2.785) BS02 CLA ? GO:0009507 ... R4ZGS7 37550369
    40582 8c29:h (2.785) BS03 CLA ? GO:0009507 ... R4ZGS7 37550369
    40583 8c29:i (2.785) BS01 CLA ? GO:0005737 ... R4ZGS4 37550369
    40584 8c29:k (2.785) BS01 CLA ? GO:0005737 ... R4ZGX8 37550369
    40585 8c29:n (2.785) BS03 CLA ? GO:0009416 ... Q40771 37550369
    40586 8c29:n (2.785) BS04 CLA ? GO:0009416 ... Q40771 37550369
    40587 8c29:n (2.785) BS05 CLA ? GO:0009416 ... Q40771 37550369
    40588 8c29:n (2.785) BS11 CLA ? GO:0009416 ... Q40771 37550369
    40589 8c29:n (2.785) BS12 CLA ? GO:0009416 ... Q40771 37550369
    40590 8c29:n (2.785) BS13 CLA ? GO:0009416 ... Q40771 37550369
    40591 8c29:n (2.785) BS14 CLA ? GO:0009416 ... Q40771 37550369
    40592 8c29:n (2.785) BS15 CLA ? GO:0009416 ... Q40771 37550369
    40593 8c29:r (2.785) BS02 CLA ? GO:0009765 ... A9NKX0 37550369
    40594 8c29:r (2.785) BS03 CLA ? GO:0009765 ... A9NKX0 37550369
    40595 8c29:r (2.785) BS04 CLA ? GO:0009765 ... A9NKX0 37550369
    40596 8c29:r (2.785) BS05 CLA ? GO:0009765 ... A9NKX0 37550369
    40597 8c29:r (2.785) BS09 CLA ? GO:0009765 ... A9NKX0 37550369
    40598 8c29:r (2.785) BS10 CLA ? GO:0009765 ... A9NKX0 37550369
    40599 8c29:r (2.785) BS11 CLA ? GO:0009765 ... A9NKX0 37550369
    40600 8c29:r (2.785) BS12 CLA ? GO:0009765 ... A9NKX0 37550369
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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