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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40201 8bd3:8 (2.73) BS05 CLA N/A GO:0009765 ... N/A 37566050
    40202 8bd3:8 (2.73) BS06 CLA N/A GO:0009765 ... N/A 37566050
    40203 8bd3:8 (2.73) BS07 CLA N/A GO:0009765 ... N/A 37566050
    40204 8bd3:8 (2.73) BS12 CLA N/A GO:0009765 ... N/A 37566050
    40205 8bd3:8 (2.73) BS13 CLA N/A GO:0009765 ... N/A 37566050
    40206 8bd3:8 (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    40207 8bd3:8 (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    40208 8bd3:8 (2.73) BS16 CLA N/A GO:0009765 ... N/A 37566050
    40209 8bd3:8 (2.73) BS17 CLA N/A GO:0009765 ... N/A 37566050
    40210 8bd3:9 (2.73) BS03 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40211 8bd3:9 (2.73) BS05 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40212 8bd3:9 (2.73) BS06 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40213 8bd3:9 (2.73) BS07 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40214 8bd3:9 (2.73) BS13 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40215 8bd3:9 (2.73) BS14 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40216 8bd3:9 (2.73) BS15 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40217 8bd3:9 (2.73) BS16 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40218 8bd3:9 (2.73) BS17 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40219 8bd3:A (2.73) BS03 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    40220 8bd3:A (2.73) BS04 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    40221 8bd3:A (2.73) BS05 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    40222 8bd3:A (2.73) BS07 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    40223 8bd3:A (2.73) BS08 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    40224 8bd3:B (2.73) BS01 CLA ? GO:0009507 ... W8TIK4 37566050
    40225 8bd3:B (2.73) BS02 CLA ? GO:0009507 ... W8TIK4 37566050
    40226 8bd3:B (2.73) BS03 CLA ? GO:0009507 ... W8TIK4 37566050
    40227 8bd3:B (2.73) BS04 CLA ? GO:0009507 ... W8TIK4 37566050
    40228 8bd3:B (2.73) BS05 CLA ? GO:0009507 ... W8TIK4 37566050
    40229 8bd3:B (2.73) BS06 CLA ? GO:0009507 ... W8TIK4 37566050
    40230 8bd3:B (2.73) BS07 CLA ? GO:0009507 ... W8TIK4 37566050
    40231 8bd3:B (2.73) BS08 CLA ? GO:0009507 ... W8TIK4 37566050
    40232 8bd3:B (2.73) BS09 CLA ? GO:0009507 ... W8TIK4 37566050
    40233 8bd3:B (2.73) BS10 CLA ? GO:0009507 ... W8TIK4 37566050
    40234 8bd3:B (2.73) BS11 CLA ? GO:0009507 ... W8TIK4 37566050
    40235 8bd3:B (2.73) BS12 CLA ? GO:0009507 ... W8TIK4 37566050
    40236 8bd3:B (2.73) BS13 CLA ? GO:0009507 ... W8TIK4 37566050
    40237 8bd3:B (2.73) BS14 CLA ? GO:0009507 ... W8TIK4 37566050
    40238 8bd3:B (2.73) BS15 CLA ? GO:0009507 ... W8TIK4 37566050
    40239 8bd3:B (2.73) BS16 CLA ? GO:0009507 ... W8TIK4 37566050
    40240 8bd3:B (2.73) BS17 CLA ? GO:0009507 ... W8TIK4 37566050
    40241 8bd3:B (2.73) BS18 CLA ? GO:0009507 ... W8TIK4 37566050
    40242 8bd3:B (2.73) BS19 CLA ? GO:0009507 ... W8TIK4 37566050
    40243 8bd3:C (2.73) BS02 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40244 8bd3:C (2.73) BS03 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40245 8bd3:C (2.73) BS04 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40246 8bd3:C (2.73) BS05 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40247 8bd3:C (2.73) BS06 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40248 8bd3:C (2.73) BS07 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40249 8bd3:C (2.73) BS08 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40250 8bd3:C (2.73) BS09 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40251 8bd3:C (2.73) BS10 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40252 8bd3:C (2.73) BS11 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40253 8bd3:C (2.73) BS12 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40254 8bd3:C (2.73) BS13 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40255 8bd3:C (2.73) BS14 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40256 8bd3:C (2.73) BS15 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40257 8bd3:D (2.73) BS02 CLA 1.10.3.9 GO:0005506 ... W8SYD4 37566050
    40258 8bd3:D (2.73) BS04 CLA 1.10.3.9 GO:0005506 ... W8SYD4 37566050
    40259 8bd3:D (2.73) BS07 CLA 1.10.3.9 GO:0005506 ... W8SYD4 37566050
    40260 8bd3:D (2.73) BS08 CLA 1.10.3.9 GO:0005506 ... W8SYD4 37566050
    40261 8bd3:G (2.73) BS02 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40262 8bd3:G (2.73) BS03 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40263 8bd3:G (2.73) BS04 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40264 8bd3:G (2.73) BS09 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40265 8bd3:G (2.73) BS10 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40266 8bd3:G (2.73) BS11 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40267 8bd3:G (2.73) BS12 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40268 8bd3:G (2.73) BS13 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40269 8bd3:G (2.73) BS17 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40270 8bd3:H (2.73) BS01 CLA ? GO:0009523 ... W8SIT0 37566050
    40271 8bd3:H (2.73) BS02 CLA ? GO:0009523 ... W8SIT0 37566050
    40272 8bd3:H (2.73) BS03 CLA ? GO:0009523 ... W8SIT0 37566050
    40273 8bd3:I (2.73) BS01 CLA ? GO:0009523 ... A0A5P4ND48 37566050
    40274 8bd3:K (2.73) BS01 CLA ? GO:0009523 ... P56348 37566050
    40275 8bd3:K (2.73) BS02 CLA ? GO:0009523 ... P56348 37566050
    40276 8bd3:N (2.73) BS03 CLA N/A GO:0009765 ... N/A 37566050
    40277 8bd3:N (2.73) BS04 CLA N/A GO:0009765 ... N/A 37566050
    40278 8bd3:N (2.73) BS05 CLA N/A GO:0009765 ... N/A 37566050
    40279 8bd3:N (2.73) BS10 CLA N/A GO:0009765 ... N/A 37566050
    40280 8bd3:N (2.73) BS11 CLA N/A GO:0009765 ... N/A 37566050
    40281 8bd3:N (2.73) BS12 CLA N/A GO:0009765 ... N/A 37566050
    40282 8bd3:N (2.73) BS13 CLA N/A GO:0009765 ... N/A 37566050
    40283 8bd3:N (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    40284 8bd3:N (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    40285 8bd3:N (2.73) BS16 CLA N/A GO:0009765 ... N/A 37566050
    40286 8bd3:R (2.73) BS02 CLA N/A GO:0009765 ... N/A 37566050
    40287 8bd3:R (2.73) BS03 CLA N/A GO:0009765 ... N/A 37566050
    40288 8bd3:R (2.73) BS04 CLA N/A GO:0009765 ... N/A 37566050
    40289 8bd3:R (2.73) BS05 CLA N/A GO:0009765 ... N/A 37566050
    40290 8bd3:R (2.73) BS06 CLA N/A GO:0009765 ... N/A 37566050
    40291 8bd3:R (2.73) BS10 CLA N/A GO:0009765 ... N/A 37566050
    40292 8bd3:R (2.73) BS11 CLA N/A GO:0009765 ... N/A 37566050
    40293 8bd3:R (2.73) BS12 CLA N/A GO:0009765 ... N/A 37566050
    40294 8bd3:R (2.73) BS13 CLA N/A GO:0009765 ... N/A 37566050
    40295 8bd3:R (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    40296 8bd3:R (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    40297 8bd3:S (2.73) BS01 CLA N/A GO:0009765 ... N/A 37566050
    40298 8bd3:S (2.73) BS04 CLA N/A GO:0009765 ... N/A 37566050
    40299 8bd3:S (2.73) BS05 CLA N/A GO:0009765 ... N/A 37566050
    40300 8bd3:S (2.73) BS06 CLA N/A GO:0009765 ... N/A 37566050
    40301 8bd3:S (2.73) BS07 CLA N/A GO:0009765 ... N/A 37566050
    40302 8bd3:S (2.73) BS11 CLA N/A GO:0009765 ... N/A 37566050
    40303 8bd3:S (2.73) BS12 CLA N/A GO:0009765 ... N/A 37566050
    40304 8bd3:S (2.73) BS13 CLA N/A GO:0009765 ... N/A 37566050
    40305 8bd3:S (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    40306 8bd3:S (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    40307 8bd3:S (2.73) BS16 CLA N/A GO:0009765 ... N/A 37566050
    40308 8bd3:S (2.73) BS17 CLA N/A GO:0009765 ... N/A 37566050
    40309 8bd3:W (2.73) BS01 CLA N/A GO:0009507 ... N/A 37566050
    40310 8bd3:Y (2.73) BS02 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40311 8bd3:Y (2.73) BS05 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40312 8bd3:Y (2.73) BS06 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40313 8bd3:Y (2.73) BS07 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40314 8bd3:Y (2.73) BS12 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40315 8bd3:Y (2.73) BS13 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40316 8bd3:Y (2.73) BS14 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40317 8bd3:Y (2.73) BS15 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40318 8bd3:Y (2.73) BS16 CLA 2.7.1.107 GO:0009765 ... A0A2P6U5M3 37566050
    40319 8bd3:a (2.73) BS03 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    40320 8bd3:a (2.73) BS04 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    40321 8bd3:a (2.73) BS06 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    40322 8bd3:a (2.73) BS07 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    40323 8bd3:a (2.73) BS08 CLA 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    40324 8bd3:b (2.73) BS01 CLA ? GO:0009507 ... W8TIK4 37566050
    40325 8bd3:b (2.73) BS02 CLA ? GO:0009507 ... W8TIK4 37566050
    40326 8bd3:b (2.73) BS03 CLA ? GO:0009507 ... W8TIK4 37566050
    40327 8bd3:b (2.73) BS04 CLA ? GO:0009507 ... W8TIK4 37566050
    40328 8bd3:b (2.73) BS05 CLA ? GO:0009507 ... W8TIK4 37566050
    40329 8bd3:b (2.73) BS06 CLA ? GO:0009507 ... W8TIK4 37566050
    40330 8bd3:b (2.73) BS07 CLA ? GO:0009507 ... W8TIK4 37566050
    40331 8bd3:b (2.73) BS08 CLA ? GO:0009507 ... W8TIK4 37566050
    40332 8bd3:b (2.73) BS09 CLA ? GO:0009507 ... W8TIK4 37566050
    40333 8bd3:b (2.73) BS10 CLA ? GO:0009507 ... W8TIK4 37566050
    40334 8bd3:b (2.73) BS11 CLA ? GO:0009507 ... W8TIK4 37566050
    40335 8bd3:b (2.73) BS12 CLA ? GO:0009507 ... W8TIK4 37566050
    40336 8bd3:b (2.73) BS13 CLA ? GO:0009507 ... W8TIK4 37566050
    40337 8bd3:b (2.73) BS14 CLA ? GO:0009507 ... W8TIK4 37566050
    40338 8bd3:b (2.73) BS15 CLA ? GO:0009507 ... W8TIK4 37566050
    40339 8bd3:b (2.73) BS16 CLA ? GO:0009507 ... W8TIK4 37566050
    40340 8bd3:b (2.73) BS17 CLA ? GO:0009507 ... W8TIK4 37566050
    40341 8bd3:b (2.73) BS18 CLA ? GO:0009507 ... W8TIK4 37566050
    40342 8bd3:b (2.73) BS19 CLA ? GO:0009507 ... W8TIK4 37566050
    40343 8bd3:c (2.73) BS02 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40344 8bd3:c (2.73) BS03 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40345 8bd3:c (2.73) BS04 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40346 8bd3:c (2.73) BS05 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40347 8bd3:c (2.73) BS06 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40348 8bd3:c (2.73) BS07 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40349 8bd3:c (2.73) BS08 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40350 8bd3:c (2.73) BS09 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40351 8bd3:c (2.73) BS10 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40352 8bd3:c (2.73) BS11 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40353 8bd3:c (2.73) BS12 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40354 8bd3:c (2.73) BS13 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40355 8bd3:c (2.73) BS14 CLA ? GO:0005737 ... A0A076EAP1 37566050
    40356 8bd3:d (2.73) BS02 CLA 1.10.3.9 GO:0005506 ... W8SYD4 37566050
    40357 8bd3:d (2.73) BS04 CLA 1.10.3.9 GO:0005506 ... W8SYD4 37566050
    40358 8bd3:d (2.73) BS05 CLA 1.10.3.9 GO:0005506 ... W8SYD4 37566050
    40359 8bd3:d (2.73) BS08 CLA 1.10.3.9 GO:0005506 ... W8SYD4 37566050
    40360 8bd3:d (2.73) BS09 CLA 1.10.3.9 GO:0005506 ... W8SYD4 37566050
    40361 8bd3:g (2.73) BS02 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40362 8bd3:g (2.73) BS03 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40363 8bd3:g (2.73) BS04 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40364 8bd3:g (2.73) BS09 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40365 8bd3:g (2.73) BS10 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40366 8bd3:g (2.73) BS11 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40367 8bd3:g (2.73) BS12 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40368 8bd3:g (2.73) BS13 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40369 8bd3:g (2.73) BS16 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40370 8bd3:h (2.73) BS01 CLA ? GO:0009523 ... W8SIT0 37566050
    40371 8bd3:h (2.73) BS02 CLA ? GO:0009523 ... W8SIT0 37566050
    40372 8bd3:h (2.73) BS03 CLA ? GO:0009523 ... W8SIT0 37566050
    40373 8bd3:i (2.73) BS01 CLA ? GO:0009523 ... A0A5P4ND48 37566050
    40374 8bd3:i (2.73) BS02 CLA ? GO:0009523 ... A0A5P4ND48 37566050
    40375 8bd3:k (2.73) BS01 CLA ? GO:0009523 ... P56348 37566050
    40376 8bd3:k (2.73) BS02 CLA ? GO:0009523 ... P56348 37566050
    40377 8bd3:m (2.73) BS01 CLA ? GO:0005737 ... A0A5P4NAV9 37566050
    40378 8bd3:n (2.73) BS03 CLA N/A GO:0009765 ... N/A 37566050
    40379 8bd3:n (2.73) BS04 CLA N/A GO:0009765 ... N/A 37566050
    40380 8bd3:n (2.73) BS05 CLA N/A GO:0009765 ... N/A 37566050
    40381 8bd3:n (2.73) BS11 CLA N/A GO:0009765 ... N/A 37566050
    40382 8bd3:n (2.73) BS12 CLA N/A GO:0009765 ... N/A 37566050
    40383 8bd3:n (2.73) BS13 CLA N/A GO:0009765 ... N/A 37566050
    40384 8bd3:n (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    40385 8bd3:n (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    40386 8bd3:n (2.73) BS16 CLA N/A GO:0009765 ... N/A 37566050
    40387 8bd3:n (2.73) BS17 CLA N/A GO:0009765 ... N/A 37566050
    40388 8bd3:n (2.73) BS18 CLA N/A GO:0009765 ... N/A 37566050
    40389 8bd3:p (2.73) BS01 CLA N/A GO:0009765 ... N/A 37566050
    40390 8bd3:p (2.73) BS03 CLA N/A GO:0009765 ... N/A 37566050
    40391 8bd3:p (2.73) BS04 CLA N/A GO:0009765 ... N/A 37566050
    40392 8bd3:p (2.73) BS05 CLA N/A GO:0009765 ... N/A 37566050
    40393 8bd3:p (2.73) BS11 CLA N/A GO:0009765 ... N/A 37566050
    40394 8bd3:p (2.73) BS12 CLA N/A GO:0009765 ... N/A 37566050
    40395 8bd3:p (2.73) BS13 CLA N/A GO:0009765 ... N/A 37566050
    40396 8bd3:p (2.73) BS14 CLA N/A GO:0009765 ... N/A 37566050
    40397 8bd3:p (2.73) BS15 CLA N/A GO:0009765 ... N/A 37566050
    40398 8bd3:p (2.73) BS16 CLA N/A GO:0009765 ... N/A 37566050
    40399 8bd3:q (2.73) BS01 CLA ? GO:0009765 ... A0A2P6TDA6 37566050
    40400 8bd3:q (2.73) BS04 CLA ? GO:0009765 ... A0A2P6TDA6 37566050

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218