Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 5 6 7 8 9 10 11 12 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1rwt:D (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    202 1rwt:D (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    203 1rwt:D (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    204 1rwt:D (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    205 1rwt:D (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    206 1rwt:D (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    207 1rwt:D (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    208 1rwt:E (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    209 1rwt:E (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    210 1rwt:E (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    211 1rwt:E (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    212 1rwt:E (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    213 1rwt:E (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    214 1rwt:E (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    215 1rwt:E (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    216 1rwt:F (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    217 1rwt:F (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    218 1rwt:F (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    219 1rwt:F (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    220 1rwt:F (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    221 1rwt:F (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    222 1rwt:F (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    223 1rwt:F (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    224 1rwt:G (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    225 1rwt:G (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    226 1rwt:G (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    227 1rwt:G (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    228 1rwt:G (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    229 1rwt:G (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    230 1rwt:G (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    231 1rwt:G (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    232 1rwt:H (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    233 1rwt:H (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    234 1rwt:H (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    235 1rwt:H (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    236 1rwt:H (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    237 1rwt:H (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    238 1rwt:H (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    239 1rwt:H (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    240 1rwt:I (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    241 1rwt:I (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    242 1rwt:I (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    243 1rwt:I (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    244 1rwt:I (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    245 1rwt:I (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    246 1rwt:I (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    247 1rwt:I (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    248 1rwt:J (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    249 1rwt:J (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    250 1rwt:J (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    251 1rwt:J (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    252 1rwt:J (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    253 1rwt:J (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    254 1rwt:J (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    255 1rwt:J (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    256 1s5l:A (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    257 1s5l:A (3.5) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    258 1s5l:A (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    259 1s5l:A (3.5) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    260 1s5l:A (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    261 1s5l:B (3.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 14764885
    262 1s5l:B (3.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 14764885
    263 1s5l:B (3.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 14764885
    264 1s5l:B (3.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 14764885
    265 1s5l:B (3.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 14764885
    266 1s5l:B (3.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 14764885
    267 1s5l:B (3.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 14764885
    268 1s5l:B (3.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 14764885
    269 1s5l:B (3.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 14764885
    270 1s5l:B (3.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 14764885
    271 1s5l:B (3.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 14764885
    272 1s5l:B (3.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 14764885
    273 1s5l:B (3.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 14764885
    274 1s5l:B (3.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 14764885
    275 1s5l:B (3.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 14764885
    276 1s5l:B (3.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 14764885
    277 1s5l:C (3.5) BS01 CLA ? GO:0005737 ... Q8DIF8 14764885
    278 1s5l:C (3.5) BS02 CLA ? GO:0005737 ... Q8DIF8 14764885
    279 1s5l:C (3.5) BS03 CLA ? GO:0005737 ... Q8DIF8 14764885
    280 1s5l:C (3.5) BS04 CLA ? GO:0005737 ... Q8DIF8 14764885
    281 1s5l:C (3.5) BS05 CLA ? GO:0005737 ... Q8DIF8 14764885
    282 1s5l:C (3.5) BS06 CLA ? GO:0005737 ... Q8DIF8 14764885
    283 1s5l:C (3.5) BS07 CLA ? GO:0005737 ... Q8DIF8 14764885
    284 1s5l:C (3.5) BS08 CLA ? GO:0005737 ... Q8DIF8 14764885
    285 1s5l:C (3.5) BS09 CLA ? GO:0005737 ... Q8DIF8 14764885
    286 1s5l:C (3.5) BS10 CLA ? GO:0005737 ... Q8DIF8 14764885
    287 1s5l:C (3.5) BS11 CLA ? GO:0005737 ... Q8DIF8 14764885
    288 1s5l:C (3.5) BS12 CLA ? GO:0005737 ... Q8DIF8 14764885
    289 1s5l:C (3.5) BS13 CLA ? GO:0005737 ... Q8DIF8 14764885
    290 1s5l:C (3.5) BS14 CLA ? GO:0005737 ... Q8DIF8 14764885
    291 1s5l:D (3.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    292 1s5l:D (3.5) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    293 1s5l:D (3.5) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    294 1s5l:D (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    295 1s5l:D (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    296 1s5l:H (3.5) BS01 CLA ? GO:0009523 ... Q8DJ43 14764885
    297 1s5l:H (3.5) BS02 CLA ? GO:0009523 ... Q8DJ43 14764885
    298 1s5l:H (3.5) BS03 CLA ? GO:0009523 ... Q8DJ43 14764885
    299 1s5l:H (3.5) BS04 CLA ? GO:0009523 ... Q8DJ43 14764885
    300 1s5l:K (3.5) BS01 CLA ? GO:0009523 ... Q9F1K9 14764885
    301 1s5l:K (3.5) BS02 CLA ? GO:0009523 ... Q9F1K9 14764885
    302 1s5l:M (3.5) BS01 CLA ? GO:0005737 ... Q8DHA7 14764885
    303 1s5l:a (3.5) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    304 1s5l:a (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    305 1s5l:a (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    306 1s5l:a (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    307 1s5l:a (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    308 1s5l:a (3.5) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    309 1s5l:b (3.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 14764885
    310 1s5l:b (3.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 14764885
    311 1s5l:b (3.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 14764885
    312 1s5l:b (3.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 14764885
    313 1s5l:b (3.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 14764885
    314 1s5l:b (3.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 14764885
    315 1s5l:b (3.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 14764885
    316 1s5l:b (3.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 14764885
    317 1s5l:b (3.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 14764885
    318 1s5l:b (3.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 14764885
    319 1s5l:b (3.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 14764885
    320 1s5l:b (3.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 14764885
    321 1s5l:b (3.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 14764885
    322 1s5l:b (3.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 14764885
    323 1s5l:b (3.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 14764885
    324 1s5l:b (3.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 14764885
    325 1s5l:c (3.5) BS01 CLA ? GO:0005737 ... Q8DIF8 14764885
    326 1s5l:c (3.5) BS02 CLA ? GO:0005737 ... Q8DIF8 14764885
    327 1s5l:c (3.5) BS03 CLA ? GO:0005737 ... Q8DIF8 14764885
    328 1s5l:c (3.5) BS04 CLA ? GO:0005737 ... Q8DIF8 14764885
    329 1s5l:c (3.5) BS05 CLA ? GO:0005737 ... Q8DIF8 14764885
    330 1s5l:c (3.5) BS06 CLA ? GO:0005737 ... Q8DIF8 14764885
    331 1s5l:c (3.5) BS07 CLA ? GO:0005737 ... Q8DIF8 14764885
    332 1s5l:c (3.5) BS08 CLA ? GO:0005737 ... Q8DIF8 14764885
    333 1s5l:c (3.5) BS09 CLA ? GO:0005737 ... Q8DIF8 14764885
    334 1s5l:c (3.5) BS10 CLA ? GO:0005737 ... Q8DIF8 14764885
    335 1s5l:c (3.5) BS11 CLA ? GO:0005737 ... Q8DIF8 14764885
    336 1s5l:c (3.5) BS12 CLA ? GO:0005737 ... Q8DIF8 14764885
    337 1s5l:c (3.5) BS13 CLA ? GO:0005737 ... Q8DIF8 14764885
    338 1s5l:c (3.5) BS14 CLA ? GO:0005737 ... Q8DIF8 14764885
    339 1s5l:d (3.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    340 1s5l:d (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    341 1s5l:d (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    342 1s5l:d (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    343 1s5l:d (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    344 1s5l:h (3.5) BS01 CLA ? GO:0009523 ... Q8DJ43 14764885
    345 1s5l:h (3.5) BS02 CLA ? GO:0009523 ... Q8DJ43 14764885
    346 1s5l:h (3.5) BS03 CLA ? GO:0009523 ... Q8DJ43 14764885
    347 1s5l:h (3.5) BS04 CLA ? GO:0009523 ... Q8DJ43 14764885
    348 1s5l:i (3.5) BS01 CLA ? GO:0005737 ... Q8DJZ6 14764885
    349 1s5l:k (3.5) BS01 CLA ? GO:0009523 ... Q9F1K9 14764885
    350 1s5l:k (3.5) BS02 CLA ? GO:0009523 ... Q9F1K9 14764885
    351 1s5l:m (3.5) BS01 CLA ? GO:0005737 ... Q8DHA7 14764885
    352 1vcr:A (9.5) BS01 CLA ? GO:0009765 ... P07371 15103124
    353 1vcr:A (9.5) BS02 CLA ? GO:0009765 ... P07371 15103124
    354 1vf5:A (3.0) BS05 CLA ? GO:0009055 ... P83791 14526088
    355 1vf5:B (3.0) BS03 CLA ? GO:0009055 ... P83792 14526088
    356 1vf5:O (3.0) BS04 CLA ? GO:0009055 ... P83792 14526088
    357 1w5c:A (3.2) BS01 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    358 1w5c:A (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    359 1w5c:A (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    360 1w5c:A (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    361 1w5c:A (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    362 1w5c:B (3.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 N/A
    363 1w5c:B (3.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 N/A
    364 1w5c:B (3.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 N/A
    365 1w5c:B (3.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 N/A
    366 1w5c:B (3.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 N/A
    367 1w5c:B (3.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 N/A
    368 1w5c:B (3.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 N/A
    369 1w5c:B (3.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 N/A
    370 1w5c:B (3.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 N/A
    371 1w5c:B (3.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 N/A
    372 1w5c:B (3.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 N/A
    373 1w5c:B (3.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 N/A
    374 1w5c:B (3.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 N/A
    375 1w5c:B (3.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 N/A
    376 1w5c:C (3.2) BS01 CLA ? GO:0005737 ... Q8DIF8 N/A
    377 1w5c:C (3.2) BS02 CLA ? GO:0005737 ... Q8DIF8 N/A
    378 1w5c:C (3.2) BS03 CLA ? GO:0005737 ... Q8DIF8 N/A
    379 1w5c:C (3.2) BS04 CLA ? GO:0005737 ... Q8DIF8 N/A
    380 1w5c:C (3.2) BS05 CLA ? GO:0005737 ... Q8DIF8 N/A
    381 1w5c:C (3.2) BS06 CLA ? GO:0005737 ... Q8DIF8 N/A
    382 1w5c:C (3.2) BS07 CLA ? GO:0005737 ... Q8DIF8 N/A
    383 1w5c:C (3.2) BS08 CLA ? GO:0005737 ... Q8DIF8 N/A
    384 1w5c:C (3.2) BS09 CLA ? GO:0005737 ... Q8DIF8 N/A
    385 1w5c:C (3.2) BS10 CLA ? GO:0005737 ... Q8DIF8 N/A
    386 1w5c:C (3.2) BS11 CLA ? GO:0005737 ... Q8DIF8 N/A
    387 1w5c:C (3.2) BS12 CLA ? GO:0005737 ... Q8DIF8 N/A
    388 1w5c:C (3.2) BS13 CLA ? GO:0005737 ... Q8DIF8 N/A
    389 1w5c:D (3.2) BS01 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    390 1w5c:D (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    391 1w5c:D (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    392 1w5c:D (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    393 1w5c:D (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    394 1w5c:G (3.2) BS01 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    395 1w5c:G (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    396 1w5c:G (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    397 1w5c:G (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    398 1w5c:G (3.2) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 N/A
    399 1w5c:H (3.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 N/A
    400 1w5c:H (3.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218