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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 4il6:b (2.1) BS07 CLA ? GO:0009521 ... D0VWR1 23426624
    2202 4il6:b (2.1) BS08 CLA ? GO:0009521 ... D0VWR1 23426624
    2203 4il6:b (2.1) BS09 CLA ? GO:0009521 ... D0VWR1 23426624
    2204 4il6:b (2.1) BS10 CLA ? GO:0009521 ... D0VWR1 23426624
    2205 4il6:b (2.1) BS11 CLA ? GO:0009521 ... D0VWR1 23426624
    2206 4il6:b (2.1) BS12 CLA ? GO:0009521 ... D0VWR1 23426624
    2207 4il6:b (2.1) BS13 CLA ? GO:0009521 ... D0VWR1 23426624
    2208 4il6:b (2.1) BS14 CLA ? GO:0009521 ... D0VWR1 23426624
    2209 4il6:b (2.1) BS15 CLA ? GO:0009521 ... D0VWR1 23426624
    2210 4il6:b (2.1) BS16 CLA ? GO:0009521 ... D0VWR1 23426624
    2211 4il6:c (2.1) BS02 CLA ? GO:0005737 ... D0VWR7 23426624
    2212 4il6:c (2.1) BS03 CLA ? GO:0005737 ... D0VWR7 23426624
    2213 4il6:c (2.1) BS04 CLA ? GO:0005737 ... D0VWR7 23426624
    2214 4il6:c (2.1) BS05 CLA ? GO:0005737 ... D0VWR7 23426624
    2215 4il6:c (2.1) BS06 CLA ? GO:0005737 ... D0VWR7 23426624
    2216 4il6:c (2.1) BS07 CLA ? GO:0005737 ... D0VWR7 23426624
    2217 4il6:c (2.1) BS08 CLA ? GO:0005737 ... D0VWR7 23426624
    2218 4il6:c (2.1) BS09 CLA ? GO:0005737 ... D0VWR7 23426624
    2219 4il6:c (2.1) BS10 CLA ? GO:0005737 ... D0VWR7 23426624
    2220 4il6:c (2.1) BS11 CLA ? GO:0005737 ... D0VWR7 23426624
    2221 4il6:c (2.1) BS12 CLA ? GO:0005737 ... D0VWR7 23426624
    2222 4il6:c (2.1) BS13 CLA ? GO:0005737 ... D0VWR7 23426624
    2223 4il6:c (2.1) BS14 CLA ? GO:0005737 ... D0VWR7 23426624
    2224 4il6:d (2.1) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 23426624
    2225 4il6:d (2.1) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 23426624
    2226 4il6:d (2.1) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 23426624
    2227 4il6:d (2.1) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 23426624
    2228 4il6:d (2.1) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 23426624
    2229 4il6:h (2.1) BS01 CLA ? GO:0009523 ... P19052 23426624
    2230 4il6:h (2.1) BS02 CLA ? GO:0009523 ... P19052 23426624
    2231 4il6:h (2.1) BS03 CLA ? GO:0009523 ... P19052 23426624
    2232 4il6:h (2.1) BS04 CLA ? GO:0009523 ... P19052 23426624
    2233 4il6:i (2.1) BS01 CLA ? GO:0005737 ... P12240 23426624
    2234 4il6:k (2.1) BS01 CLA ? GO:0005737 ... P19054 23426624
    2235 4il6:k (2.1) BS02 CLA ? GO:0005737 ... P19054 23426624
    2236 4il6:x (2.1) BS01 CLA ? GO:0009523 ... D0VWR4 23426624
    2237 4il6:y (2.1) BS01 CLA ? GO:0009523 ... D0VWR3 23426624
    2238 4ixq:A (5.7) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2239 4ixq:A (5.7) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2240 4ixq:A (5.7) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2241 4ixq:A (5.7) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2242 4ixq:A (5.7) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2243 4ixq:B (5.7) BS01 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2244 4ixq:B (5.7) BS02 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2245 4ixq:B (5.7) BS03 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2246 4ixq:B (5.7) BS04 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2247 4ixq:B (5.7) BS05 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2248 4ixq:B (5.7) BS06 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2249 4ixq:B (5.7) BS07 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2250 4ixq:B (5.7) BS08 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2251 4ixq:B (5.7) BS09 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2252 4ixq:B (5.7) BS10 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2253 4ixq:B (5.7) BS11 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2254 4ixq:B (5.7) BS12 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2255 4ixq:B (5.7) BS13 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2256 4ixq:B (5.7) BS14 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2257 4ixq:B (5.7) BS15 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2258 4ixq:B (5.7) BS16 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2259 4ixq:C (5.7) BS01 CLA ? GO:0005737 ... Q8DIF8 23413188
    2260 4ixq:C (5.7) BS02 CLA ? GO:0005737 ... Q8DIF8 23413188
    2261 4ixq:C (5.7) BS03 CLA ? GO:0005737 ... Q8DIF8 23413188
    2262 4ixq:C (5.7) BS04 CLA ? GO:0005737 ... Q8DIF8 23413188
    2263 4ixq:C (5.7) BS05 CLA ? GO:0005737 ... Q8DIF8 23413188
    2264 4ixq:C (5.7) BS06 CLA ? GO:0005737 ... Q8DIF8 23413188
    2265 4ixq:C (5.7) BS07 CLA ? GO:0005737 ... Q8DIF8 23413188
    2266 4ixq:C (5.7) BS08 CLA ? GO:0005737 ... Q8DIF8 23413188
    2267 4ixq:C (5.7) BS09 CLA ? GO:0005737 ... Q8DIF8 23413188
    2268 4ixq:C (5.7) BS10 CLA ? GO:0005737 ... Q8DIF8 23413188
    2269 4ixq:C (5.7) BS11 CLA ? GO:0005737 ... Q8DIF8 23413188
    2270 4ixq:C (5.7) BS12 CLA ? GO:0005737 ... Q8DIF8 23413188
    2271 4ixq:C (5.7) BS13 CLA ? GO:0005737 ... Q8DIF8 23413188
    2272 4ixq:D (5.7) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2273 4ixq:D (5.7) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2274 4ixq:D (5.7) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2275 4ixq:D (5.7) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2276 4ixq:D (5.7) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2277 4ixq:H (5.7) BS01 CLA ? GO:0009523 ... Q8DJ43 23413188
    2278 4ixq:H (5.7) BS02 CLA ? GO:0009523 ... Q8DJ43 23413188
    2279 4ixq:H (5.7) BS03 CLA ? GO:0009523 ... Q8DJ43 23413188
    2280 4ixq:H (5.7) BS04 CLA ? GO:0009523 ... Q8DJ43 23413188
    2281 4ixq:I (5.7) BS01 CLA ? GO:0005737 ... Q8DJZ6 23413188
    2282 4ixq:K (5.7) BS02 CLA ? GO:0005737 ... Q9F1K9 23413188
    2283 4ixq:K (5.7) BS03 CLA ? GO:0005737 ... Q9F1K9 23413188
    2284 4ixq:Z (5.7) BS02 CLA ? GO:0009523 ... Q8DHJ2 23413188
    2285 4ixq:a (5.7) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2286 4ixq:a (5.7) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2287 4ixq:a (5.7) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2288 4ixq:a (5.7) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2289 4ixq:a (5.7) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2290 4ixq:b (5.7) BS01 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2291 4ixq:b (5.7) BS02 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2292 4ixq:b (5.7) BS03 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2293 4ixq:b (5.7) BS04 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2294 4ixq:b (5.7) BS05 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2295 4ixq:b (5.7) BS06 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2296 4ixq:b (5.7) BS07 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2297 4ixq:b (5.7) BS08 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2298 4ixq:b (5.7) BS09 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2299 4ixq:b (5.7) BS10 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2300 4ixq:b (5.7) BS11 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2301 4ixq:b (5.7) BS12 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2302 4ixq:b (5.7) BS13 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2303 4ixq:b (5.7) BS14 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2304 4ixq:b (5.7) BS15 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2305 4ixq:b (5.7) BS16 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2306 4ixq:c (5.7) BS01 CLA ? GO:0005737 ... Q8DIF8 23413188
    2307 4ixq:c (5.7) BS02 CLA ? GO:0005737 ... Q8DIF8 23413188
    2308 4ixq:c (5.7) BS03 CLA ? GO:0005737 ... Q8DIF8 23413188
    2309 4ixq:c (5.7) BS04 CLA ? GO:0005737 ... Q8DIF8 23413188
    2310 4ixq:c (5.7) BS05 CLA ? GO:0005737 ... Q8DIF8 23413188
    2311 4ixq:c (5.7) BS06 CLA ? GO:0005737 ... Q8DIF8 23413188
    2312 4ixq:c (5.7) BS07 CLA ? GO:0005737 ... Q8DIF8 23413188
    2313 4ixq:c (5.7) BS08 CLA ? GO:0005737 ... Q8DIF8 23413188
    2314 4ixq:c (5.7) BS09 CLA ? GO:0005737 ... Q8DIF8 23413188
    2315 4ixq:c (5.7) BS10 CLA ? GO:0005737 ... Q8DIF8 23413188
    2316 4ixq:c (5.7) BS11 CLA ? GO:0005737 ... Q8DIF8 23413188
    2317 4ixq:c (5.7) BS12 CLA ? GO:0005737 ... Q8DIF8 23413188
    2318 4ixq:c (5.7) BS13 CLA ? GO:0005737 ... Q8DIF8 23413188
    2319 4ixq:d (5.7) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2320 4ixq:d (5.7) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2321 4ixq:d (5.7) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2322 4ixq:d (5.7) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2323 4ixq:d (5.7) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2324 4ixq:h (5.7) BS01 CLA ? GO:0009523 ... Q8DJ43 23413188
    2325 4ixq:h (5.7) BS02 CLA ? GO:0009523 ... Q8DJ43 23413188
    2326 4ixq:h (5.7) BS03 CLA ? GO:0009523 ... Q8DJ43 23413188
    2327 4ixq:h (5.7) BS04 CLA ? GO:0009523 ... Q8DJ43 23413188
    2328 4ixq:i (5.7) BS01 CLA ? GO:0005737 ... Q8DJZ6 23413188
    2329 4ixq:k (5.7) BS02 CLA ? GO:0005737 ... Q9F1K9 23413188
    2330 4ixq:k (5.7) BS03 CLA ? GO:0005737 ... Q9F1K9 23413188
    2331 4ixq:z (5.7) BS02 CLA ? GO:0009523 ... Q8DHJ2 23413188
    2332 4ixr:A (5.9) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2333 4ixr:A (5.9) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2334 4ixr:A (5.9) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2335 4ixr:A (5.9) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2336 4ixr:A (5.9) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2337 4ixr:B (5.9) BS01 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2338 4ixr:B (5.9) BS02 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2339 4ixr:B (5.9) BS03 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2340 4ixr:B (5.9) BS04 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2341 4ixr:B (5.9) BS05 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2342 4ixr:B (5.9) BS06 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2343 4ixr:B (5.9) BS07 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2344 4ixr:B (5.9) BS08 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2345 4ixr:B (5.9) BS09 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2346 4ixr:B (5.9) BS10 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2347 4ixr:B (5.9) BS11 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2348 4ixr:B (5.9) BS12 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2349 4ixr:B (5.9) BS13 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2350 4ixr:B (5.9) BS14 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2351 4ixr:B (5.9) BS15 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2352 4ixr:B (5.9) BS16 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2353 4ixr:C (5.9) BS01 CLA ? GO:0005737 ... Q8DIF8 23413188
    2354 4ixr:C (5.9) BS02 CLA ? GO:0005737 ... Q8DIF8 23413188
    2355 4ixr:C (5.9) BS03 CLA ? GO:0005737 ... Q8DIF8 23413188
    2356 4ixr:C (5.9) BS04 CLA ? GO:0005737 ... Q8DIF8 23413188
    2357 4ixr:C (5.9) BS05 CLA ? GO:0005737 ... Q8DIF8 23413188
    2358 4ixr:C (5.9) BS06 CLA ? GO:0005737 ... Q8DIF8 23413188
    2359 4ixr:C (5.9) BS07 CLA ? GO:0005737 ... Q8DIF8 23413188
    2360 4ixr:C (5.9) BS08 CLA ? GO:0005737 ... Q8DIF8 23413188
    2361 4ixr:C (5.9) BS09 CLA ? GO:0005737 ... Q8DIF8 23413188
    2362 4ixr:C (5.9) BS10 CLA ? GO:0005737 ... Q8DIF8 23413188
    2363 4ixr:C (5.9) BS11 CLA ? GO:0005737 ... Q8DIF8 23413188
    2364 4ixr:C (5.9) BS12 CLA ? GO:0005737 ... Q8DIF8 23413188
    2365 4ixr:C (5.9) BS13 CLA ? GO:0005737 ... Q8DIF8 23413188
    2366 4ixr:D (5.9) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2367 4ixr:D (5.9) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2368 4ixr:D (5.9) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2369 4ixr:D (5.9) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2370 4ixr:D (5.9) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 23413188
    2371 4ixr:H (5.9) BS01 CLA ? GO:0009523 ... Q8DJ43 23413188
    2372 4ixr:H (5.9) BS02 CLA ? GO:0009523 ... Q8DJ43 23413188
    2373 4ixr:H (5.9) BS03 CLA ? GO:0009523 ... Q8DJ43 23413188
    2374 4ixr:H (5.9) BS04 CLA ? GO:0009523 ... Q8DJ43 23413188
    2375 4ixr:I (5.9) BS01 CLA ? GO:0005737 ... Q8DJZ6 23413188
    2376 4ixr:K (5.9) BS02 CLA ? GO:0005737 ... Q9F1K9 23413188
    2377 4ixr:X (5.9) BS01 CLA ? GO:0009523 ... Q9F1R6 23413188
    2378 4ixr:Z (5.9) BS02 CLA ? GO:0009523 ... Q8DHJ2 23413188
    2379 4ixr:a (5.9) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2380 4ixr:a (5.9) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2381 4ixr:a (5.9) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2382 4ixr:a (5.9) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2383 4ixr:a (5.9) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 23413188
    2384 4ixr:b (5.9) BS01 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2385 4ixr:b (5.9) BS02 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2386 4ixr:b (5.9) BS03 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2387 4ixr:b (5.9) BS04 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2388 4ixr:b (5.9) BS05 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2389 4ixr:b (5.9) BS06 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2390 4ixr:b (5.9) BS07 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2391 4ixr:b (5.9) BS08 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2392 4ixr:b (5.9) BS09 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2393 4ixr:b (5.9) BS10 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2394 4ixr:b (5.9) BS11 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2395 4ixr:b (5.9) BS12 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2396 4ixr:b (5.9) BS13 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2397 4ixr:b (5.9) BS14 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2398 4ixr:b (5.9) BS15 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2399 4ixr:b (5.9) BS16 CLA ? GO:0009521 ... Q8DIQ1 23413188
    2400 4ixr:c (5.9) BS01 CLA ? GO:0005737 ... Q8DIF8 23413188

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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