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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    22401 6w1u:B (2.09) BS10 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22402 6w1u:B (2.09) BS11 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22403 6w1u:B (2.09) BS12 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22404 6w1u:B (2.09) BS13 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22405 6w1u:B (2.09) BS14 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22406 6w1u:B (2.09) BS15 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22407 6w1u:B (2.09) BS16 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22408 6w1u:C (2.09) BS03 CLA ? GO:0005737 ... Q8DIF8 32434915
    22409 6w1u:C (2.09) BS04 CLA ? GO:0005737 ... Q8DIF8 32434915
    22410 6w1u:C (2.09) BS05 CLA ? GO:0005737 ... Q8DIF8 32434915
    22411 6w1u:C (2.09) BS06 CLA ? GO:0005737 ... Q8DIF8 32434915
    22412 6w1u:C (2.09) BS07 CLA ? GO:0005737 ... Q8DIF8 32434915
    22413 6w1u:C (2.09) BS08 CLA ? GO:0005737 ... Q8DIF8 32434915
    22414 6w1u:C (2.09) BS09 CLA ? GO:0005737 ... Q8DIF8 32434915
    22415 6w1u:C (2.09) BS10 CLA ? GO:0005737 ... Q8DIF8 32434915
    22416 6w1u:C (2.09) BS11 CLA ? GO:0005737 ... Q8DIF8 32434915
    22417 6w1u:C (2.09) BS12 CLA ? GO:0005737 ... Q8DIF8 32434915
    22418 6w1u:C (2.09) BS13 CLA ? GO:0005737 ... Q8DIF8 32434915
    22419 6w1u:C (2.09) BS14 CLA ? GO:0005737 ... Q8DIF8 32434915
    22420 6w1u:C (2.09) BS15 CLA ? GO:0005737 ... Q8DIF8 32434915
    22421 6w1u:D (2.09) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22422 6w1u:D (2.09) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22423 6w1u:D (2.09) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22424 6w1u:D (2.09) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22425 6w1u:D (2.09) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22426 6w1u:H (2.09) BS01 CLA ? GO:0009523 ... Q8DJ43 32434915
    22427 6w1u:H (2.09) BS02 CLA ? GO:0009523 ... Q8DJ43 32434915
    22428 6w1u:H (2.09) BS03 CLA ? GO:0009523 ... Q8DJ43 32434915
    22429 6w1u:I (2.09) BS01 CLA ? GO:0005737 ... Q8DJZ6 32434915
    22430 6w1u:K (2.09) BS02 CLA ? GO:0005737 ... Q9F1K9 32434915
    22431 6w1u:X (2.09) BS01 CLA ? GO:0009523 ... Q9F1R6 32434915
    22432 6w1u:a (2.09) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 32434915
    22433 6w1u:a (2.09) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 32434915
    22434 6w1u:a (2.09) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 32434915
    22435 6w1u:a (2.09) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 32434915
    22436 6w1u:b (2.09) BS01 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22437 6w1u:b (2.09) BS02 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22438 6w1u:b (2.09) BS03 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22439 6w1u:b (2.09) BS04 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22440 6w1u:b (2.09) BS05 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22441 6w1u:b (2.09) BS06 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22442 6w1u:b (2.09) BS07 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22443 6w1u:b (2.09) BS08 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22444 6w1u:b (2.09) BS09 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22445 6w1u:b (2.09) BS10 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22446 6w1u:b (2.09) BS11 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22447 6w1u:b (2.09) BS12 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22448 6w1u:b (2.09) BS13 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22449 6w1u:b (2.09) BS14 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22450 6w1u:b (2.09) BS15 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22451 6w1u:b (2.09) BS16 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22452 6w1u:c (2.09) BS03 CLA ? GO:0005737 ... Q8DIF8 32434915
    22453 6w1u:c (2.09) BS04 CLA ? GO:0005737 ... Q8DIF8 32434915
    22454 6w1u:c (2.09) BS05 CLA ? GO:0005737 ... Q8DIF8 32434915
    22455 6w1u:c (2.09) BS06 CLA ? GO:0005737 ... Q8DIF8 32434915
    22456 6w1u:c (2.09) BS07 CLA ? GO:0005737 ... Q8DIF8 32434915
    22457 6w1u:c (2.09) BS08 CLA ? GO:0005737 ... Q8DIF8 32434915
    22458 6w1u:c (2.09) BS09 CLA ? GO:0005737 ... Q8DIF8 32434915
    22459 6w1u:c (2.09) BS10 CLA ? GO:0005737 ... Q8DIF8 32434915
    22460 6w1u:c (2.09) BS11 CLA ? GO:0005737 ... Q8DIF8 32434915
    22461 6w1u:c (2.09) BS12 CLA ? GO:0005737 ... Q8DIF8 32434915
    22462 6w1u:c (2.09) BS13 CLA ? GO:0005737 ... Q8DIF8 32434915
    22463 6w1u:c (2.09) BS14 CLA ? GO:0005737 ... Q8DIF8 32434915
    22464 6w1u:c (2.09) BS15 CLA ? GO:0005737 ... Q8DIF8 32434915
    22465 6w1u:d (2.09) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22466 6w1u:d (2.09) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22467 6w1u:d (2.09) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22468 6w1u:d (2.09) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22469 6w1u:d (2.09) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22470 6w1u:h (2.09) BS01 CLA ? GO:0009523 ... Q8DJ43 32434915
    22471 6w1u:h (2.09) BS02 CLA ? GO:0009523 ... Q8DJ43 32434915
    22472 6w1u:h (2.09) BS03 CLA ? GO:0009523 ... Q8DJ43 32434915
    22473 6w1u:h (2.09) BS04 CLA ? GO:0009523 ... Q8DJ43 32434915
    22474 6w1u:h (2.09) BS05 CLA ? GO:0009523 ... Q8DJ43 32434915
    22475 6w1u:i (2.09) BS01 CLA ? GO:0005737 ... Q8DJZ6 32434915
    22476 6w1u:k (2.09) BS01 CLA ? GO:0005737 ... Q9F1K9 32434915
    22477 6w1u:k (2.09) BS02 CLA ? GO:0005737 ... Q9F1K9 32434915
    22478 6w1v:A (2.09) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 32434915
    22479 6w1v:A (2.09) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 32434915
    22480 6w1v:A (2.09) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 32434915
    22481 6w1v:A (2.09) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 32434915
    22482 6w1v:B (2.09) BS01 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22483 6w1v:B (2.09) BS02 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22484 6w1v:B (2.09) BS03 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22485 6w1v:B (2.09) BS04 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22486 6w1v:B (2.09) BS05 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22487 6w1v:B (2.09) BS06 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22488 6w1v:B (2.09) BS07 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22489 6w1v:B (2.09) BS08 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22490 6w1v:B (2.09) BS09 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22491 6w1v:B (2.09) BS10 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22492 6w1v:B (2.09) BS11 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22493 6w1v:B (2.09) BS12 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22494 6w1v:B (2.09) BS13 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22495 6w1v:B (2.09) BS14 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22496 6w1v:B (2.09) BS15 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22497 6w1v:B (2.09) BS16 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22498 6w1v:C (2.09) BS03 CLA ? GO:0005737 ... Q8DIF8 32434915
    22499 6w1v:C (2.09) BS04 CLA ? GO:0005737 ... Q8DIF8 32434915
    22500 6w1v:C (2.09) BS05 CLA ? GO:0005737 ... Q8DIF8 32434915
    22501 6w1v:C (2.09) BS06 CLA ? GO:0005737 ... Q8DIF8 32434915
    22502 6w1v:C (2.09) BS07 CLA ? GO:0005737 ... Q8DIF8 32434915
    22503 6w1v:C (2.09) BS08 CLA ? GO:0005737 ... Q8DIF8 32434915
    22504 6w1v:C (2.09) BS09 CLA ? GO:0005737 ... Q8DIF8 32434915
    22505 6w1v:C (2.09) BS10 CLA ? GO:0005737 ... Q8DIF8 32434915
    22506 6w1v:C (2.09) BS11 CLA ? GO:0005737 ... Q8DIF8 32434915
    22507 6w1v:C (2.09) BS12 CLA ? GO:0005737 ... Q8DIF8 32434915
    22508 6w1v:C (2.09) BS13 CLA ? GO:0005737 ... Q8DIF8 32434915
    22509 6w1v:C (2.09) BS14 CLA ? GO:0005737 ... Q8DIF8 32434915
    22510 6w1v:C (2.09) BS15 CLA ? GO:0005737 ... Q8DIF8 32434915
    22511 6w1v:D (2.09) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22512 6w1v:D (2.09) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22513 6w1v:D (2.09) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22514 6w1v:D (2.09) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22515 6w1v:D (2.09) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22516 6w1v:H (2.09) BS01 CLA ? GO:0009523 ... Q8DJ43 32434915
    22517 6w1v:H (2.09) BS02 CLA ? GO:0009523 ... Q8DJ43 32434915
    22518 6w1v:H (2.09) BS03 CLA ? GO:0009523 ... Q8DJ43 32434915
    22519 6w1v:H (2.09) BS04 CLA ? GO:0009523 ... Q8DJ43 32434915
    22520 6w1v:I (2.09) BS01 CLA ? GO:0005737 ... Q8DJZ6 32434915
    22521 6w1v:K (2.09) BS02 CLA ? GO:0005737 ... Q9F1K9 32434915
    22522 6w1v:K (2.09) BS03 CLA ? GO:0005737 ... Q9F1K9 32434915
    22523 6w1v:X (2.09) BS01 CLA ? GO:0009523 ... Q9F1R6 32434915
    22524 6w1v:Z (2.09) BS02 CLA ? GO:0009523 ... Q8DHJ2 32434915
    22525 6w1v:a (2.09) BS01 CLA 1.10.3.9 GO:0005506 ... P0A444 32434915
    22526 6w1v:a (2.09) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 32434915
    22527 6w1v:a (2.09) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 32434915
    22528 6w1v:a (2.09) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 32434915
    22529 6w1v:b (2.09) BS01 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22530 6w1v:b (2.09) BS02 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22531 6w1v:b (2.09) BS03 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22532 6w1v:b (2.09) BS04 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22533 6w1v:b (2.09) BS05 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22534 6w1v:b (2.09) BS06 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22535 6w1v:b (2.09) BS07 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22536 6w1v:b (2.09) BS08 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22537 6w1v:b (2.09) BS09 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22538 6w1v:b (2.09) BS10 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22539 6w1v:b (2.09) BS11 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22540 6w1v:b (2.09) BS12 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22541 6w1v:b (2.09) BS13 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22542 6w1v:b (2.09) BS14 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22543 6w1v:b (2.09) BS15 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22544 6w1v:b (2.09) BS16 CLA ? GO:0009521 ... Q8DIQ1 32434915
    22545 6w1v:c (2.09) BS03 CLA ? GO:0005737 ... Q8DIF8 32434915
    22546 6w1v:c (2.09) BS04 CLA ? GO:0005737 ... Q8DIF8 32434915
    22547 6w1v:c (2.09) BS05 CLA ? GO:0005737 ... Q8DIF8 32434915
    22548 6w1v:c (2.09) BS06 CLA ? GO:0005737 ... Q8DIF8 32434915
    22549 6w1v:c (2.09) BS07 CLA ? GO:0005737 ... Q8DIF8 32434915
    22550 6w1v:c (2.09) BS08 CLA ? GO:0005737 ... Q8DIF8 32434915
    22551 6w1v:c (2.09) BS09 CLA ? GO:0005737 ... Q8DIF8 32434915
    22552 6w1v:c (2.09) BS10 CLA ? GO:0005737 ... Q8DIF8 32434915
    22553 6w1v:c (2.09) BS11 CLA ? GO:0005737 ... Q8DIF8 32434915
    22554 6w1v:c (2.09) BS12 CLA ? GO:0005737 ... Q8DIF8 32434915
    22555 6w1v:c (2.09) BS13 CLA ? GO:0005737 ... Q8DIF8 32434915
    22556 6w1v:c (2.09) BS14 CLA ? GO:0005737 ... Q8DIF8 32434915
    22557 6w1v:c (2.09) BS15 CLA ? GO:0005737 ... Q8DIF8 32434915
    22558 6w1v:d (2.09) BS01 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22559 6w1v:d (2.09) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22560 6w1v:d (2.09) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22561 6w1v:d (2.09) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22562 6w1v:d (2.09) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 32434915
    22563 6w1v:h (2.09) BS01 CLA ? GO:0009523 ... Q8DJ43 32434915
    22564 6w1v:h (2.09) BS02 CLA ? GO:0009523 ... Q8DJ43 32434915
    22565 6w1v:h (2.09) BS03 CLA ? GO:0009523 ... Q8DJ43 32434915
    22566 6w1v:h (2.09) BS04 CLA ? GO:0009523 ... Q8DJ43 32434915
    22567 6w1v:i (2.09) BS01 CLA ? GO:0005737 ... Q8DJZ6 32434915
    22568 6w1v:k (2.09) BS01 CLA ? GO:0005737 ... Q9F1K9 32434915
    22569 6w1v:x (2.09) BS01 CLA ? GO:0009523 ... Q9F1R6 32434915
    22570 6wj6:A (2.58) BS03 CLA 1.10.3.9 GO:0005506 ... P16033 N/A
    22571 6wj6:A (2.58) BS04 CLA 1.10.3.9 GO:0005506 ... P16033 N/A
    22572 6wj6:A (2.58) BS06 CLA 1.10.3.9 GO:0005506 ... P16033 N/A
    22573 6wj6:A (2.58) BS07 CLA 1.10.3.9 GO:0005506 ... P16033 N/A
    22574 6wj6:A (2.58) BS08 CLA 1.10.3.9 GO:0005506 ... P16033 N/A
    22575 6wj6:B (2.58) BS01 CLA ? GO:0009521 ... P05429 N/A
    22576 6wj6:B (2.58) BS02 CLA ? GO:0009521 ... P05429 N/A
    22577 6wj6:B (2.58) BS03 CLA ? GO:0009521 ... P05429 N/A
    22578 6wj6:B (2.58) BS04 CLA ? GO:0009521 ... P05429 N/A
    22579 6wj6:B (2.58) BS05 CLA ? GO:0009521 ... P05429 N/A
    22580 6wj6:B (2.58) BS06 CLA ? GO:0009521 ... P05429 N/A
    22581 6wj6:B (2.58) BS07 CLA ? GO:0009521 ... P05429 N/A
    22582 6wj6:B (2.58) BS08 CLA ? GO:0009521 ... P05429 N/A
    22583 6wj6:B (2.58) BS09 CLA ? GO:0009521 ... P05429 N/A
    22584 6wj6:B (2.58) BS10 CLA ? GO:0009521 ... P05429 N/A
    22585 6wj6:B (2.58) BS11 CLA ? GO:0009521 ... P05429 N/A
    22586 6wj6:B (2.58) BS12 CLA ? GO:0009521 ... P05429 N/A
    22587 6wj6:B (2.58) BS13 CLA ? GO:0009521 ... P05429 N/A
    22588 6wj6:B (2.58) BS14 CLA ? GO:0009521 ... P05429 N/A
    22589 6wj6:B (2.58) BS15 CLA ? GO:0009521 ... P05429 N/A
    22590 6wj6:B (2.58) BS16 CLA ? GO:0009521 ... P05429 N/A
    22591 6wj6:C (2.58) BS01 CLA ? GO:0005737 ... P09193 N/A
    22592 6wj6:C (2.58) BS02 CLA ? GO:0005737 ... P09193 N/A
    22593 6wj6:C (2.58) BS03 CLA ? GO:0005737 ... P09193 N/A
    22594 6wj6:C (2.58) BS04 CLA ? GO:0005737 ... P09193 N/A
    22595 6wj6:C (2.58) BS05 CLA ? GO:0005737 ... P09193 N/A
    22596 6wj6:C (2.58) BS06 CLA ? GO:0005737 ... P09193 N/A
    22597 6wj6:C (2.58) BS07 CLA ? GO:0005737 ... P09193 N/A
    22598 6wj6:C (2.58) BS08 CLA ? GO:0005737 ... P09193 N/A
    22599 6wj6:C (2.58) BS09 CLA ? GO:0005737 ... P09193 N/A
    22600 6wj6:C (2.58) BS10 CLA ? GO:0005737 ... P09193 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218