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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 4fby:P (6.56) BS08 CLA ? GO:0005737 ... Q8DIF8 22665786
    2002 4fby:P (6.56) BS09 CLA ? GO:0005737 ... Q8DIF8 22665786
    2003 4fby:P (6.56) BS10 CLA ? GO:0005737 ... Q8DIF8 22665786
    2004 4fby:P (6.56) BS11 CLA ? GO:0005737 ... Q8DIF8 22665786
    2005 4fby:P (6.56) BS12 CLA ? GO:0005737 ... Q8DIF8 22665786
    2006 4fby:P (6.56) BS13 CLA ? GO:0005737 ... Q8DIF8 22665786
    2007 4fby:Q (6.56) BS01 CLA 1.10.3.9 GO:0005506 ... Q8CM25 22665786
    2008 4fby:Q (6.56) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 22665786
    2009 4fby:Q (6.56) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 22665786
    2010 4fby:Q (6.56) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 22665786
    2011 4fby:Q (6.56) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 22665786
    2012 4fby:W (6.56) BS01 CLA ? GO:0009523 ... Q8DJ43 22665786
    2013 4fby:W (6.56) BS02 CLA ? GO:0009523 ... Q8DJ43 22665786
    2014 4fby:Z (6.56) BS02 CLA ? GO:0009523 ... Q8DHJ2 22665786
    2015 4fby:a (6.56) BS01 CLA ? GO:0005737 ... Q8DJZ6 22665786
    2016 4fby:c (6.56) BS02 CLA ? GO:0009523 ... Q9F1K9 22665786
    2017 4fby:c (6.56) BS03 CLA ? GO:0009523 ... Q9F1K9 22665786
    2018 4fby:l (6.56) BS02 CLA ? GO:0009523 ... Q8DHJ2 22665786
    2019 4fe1:A (4.9228) BS01 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2020 4fe1:A (4.9228) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2021 4fe1:A (4.9228) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2022 4fe1:A (4.9228) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2023 4fe1:A (4.9228) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2024 4fe1:A (4.9228) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2025 4fe1:A (4.9228) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2026 4fe1:A (4.9228) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2027 4fe1:A (4.9228) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2028 4fe1:A (4.9228) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2029 4fe1:A (4.9228) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2030 4fe1:A (4.9228) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2031 4fe1:A (4.9228) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2032 4fe1:A (4.9228) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2033 4fe1:A (4.9228) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2034 4fe1:A (4.9228) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2035 4fe1:A (4.9228) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2036 4fe1:A (4.9228) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2037 4fe1:A (4.9228) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2038 4fe1:A (4.9228) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2039 4fe1:A (4.9228) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2040 4fe1:A (4.9228) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2041 4fe1:A (4.9228) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2042 4fe1:A (4.9228) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2043 4fe1:A (4.9228) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2044 4fe1:A (4.9228) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2045 4fe1:A (4.9228) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2046 4fe1:A (4.9228) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2047 4fe1:A (4.9228) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2048 4fe1:A (4.9228) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2049 4fe1:A (4.9228) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2050 4fe1:A (4.9228) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2051 4fe1:A (4.9228) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2052 4fe1:A (4.9228) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2053 4fe1:A (4.9228) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2054 4fe1:A (4.9228) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2055 4fe1:A (4.9228) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2056 4fe1:A (4.9228) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2057 4fe1:A (4.9228) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2058 4fe1:A (4.9228) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2059 4fe1:A (4.9228) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2060 4fe1:A (4.9228) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2061 4fe1:A (4.9228) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2062 4fe1:A (4.9228) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2063 4fe1:A (4.9228) BS47 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2064 4fe1:A (4.9228) BS48 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2065 4fe1:A (4.9228) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2066 4fe1:A (4.9228) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2067 4fe1:A (4.9228) BS51 CLA 1.97.1.12 GO:0000287 ... P0A405 22681901
    2068 4fe1:B (4.9228) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2069 4fe1:B (4.9228) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2070 4fe1:B (4.9228) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2071 4fe1:B (4.9228) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2072 4fe1:B (4.9228) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2073 4fe1:B (4.9228) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2074 4fe1:B (4.9228) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2075 4fe1:B (4.9228) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2076 4fe1:B (4.9228) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2077 4fe1:B (4.9228) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2078 4fe1:B (4.9228) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2079 4fe1:B (4.9228) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2080 4fe1:B (4.9228) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2081 4fe1:B (4.9228) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2082 4fe1:B (4.9228) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2083 4fe1:B (4.9228) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2084 4fe1:B (4.9228) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2085 4fe1:B (4.9228) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2086 4fe1:B (4.9228) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2087 4fe1:B (4.9228) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2088 4fe1:B (4.9228) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2089 4fe1:B (4.9228) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2090 4fe1:B (4.9228) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2091 4fe1:B (4.9228) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2092 4fe1:B (4.9228) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2093 4fe1:B (4.9228) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2094 4fe1:B (4.9228) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2095 4fe1:B (4.9228) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2096 4fe1:B (4.9228) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2097 4fe1:B (4.9228) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2098 4fe1:B (4.9228) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2099 4fe1:B (4.9228) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2100 4fe1:B (4.9228) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2101 4fe1:B (4.9228) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2102 4fe1:B (4.9228) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2103 4fe1:B (4.9228) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2104 4fe1:B (4.9228) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2105 4fe1:B (4.9228) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2106 4fe1:B (4.9228) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2107 4fe1:B (4.9228) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2108 4fe1:B (4.9228) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2109 4fe1:B (4.9228) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2110 4fe1:B (4.9228) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2111 4fe1:B (4.9228) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2112 4fe1:B (4.9228) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 22681901
    2113 4fe1:F (4.9228) BS01 CLA ? GO:0009522 ... P0A401 22681901
    2114 4fe1:F (4.9228) BS02 CLA ? GO:0009522 ... P0A401 22681901
    2115 4fe1:F (4.9228) BS03 CLA ? GO:0009522 ... P0A401 22681901
    2116 4fe1:F (4.9228) BS04 CLA ? GO:0009522 ... P0A401 22681901
    2117 4fe1:F (4.9228) BS05 CLA ? GO:0009522 ... P0A401 22681901
    2118 4fe1:F (4.9228) BS06 CLA ? GO:0009522 ... P0A401 22681901
    2119 4fe1:I (4.9228) BS01 CLA ? GO:0009522 ... P0A427 22681901
    2120 4fe1:I (4.9228) BS02 CLA ? GO:0009522 ... P0A427 22681901
    2121 4fe1:I (4.9228) BS03 CLA ? GO:0009522 ... P0A427 22681901
    2122 4fe1:J (4.9228) BS01 CLA ? GO:0009522 ... P0A429 22681901
    2123 4fe1:J (4.9228) BS02 CLA ? GO:0009522 ... P0A429 22681901
    2124 4fe1:J (4.9228) BS03 CLA ? GO:0009522 ... P0A429 22681901
    2125 4fe1:J (4.9228) BS04 CLA ? GO:0009522 ... P0A429 22681901
    2126 4fe1:J (4.9228) BS05 CLA ? GO:0009522 ... P0A429 22681901
    2127 4fe1:K (4.9228) BS01 CLA ? GO:0009522 ... P0A425 22681901
    2128 4fe1:K (4.9228) BS02 CLA ? GO:0009522 ... P0A425 22681901
    2129 4fe1:L (4.9228) BS01 CLA ? GO:0009522 ... Q8DGB4 22681901
    2130 4fe1:L (4.9228) BS02 CLA ? GO:0009522 ... Q8DGB4 22681901
    2131 4fe1:L (4.9228) BS03 CLA ? GO:0009522 ... Q8DGB4 22681901
    2132 4fe1:L (4.9228) BS04 CLA ? GO:0009522 ... Q8DGB4 22681901
    2133 4fe1:L (4.9228) BS06 CLA ? GO:0009522 ... Q8DGB4 22681901
    2134 4fe1:L (4.9228) BS07 CLA ? GO:0009522 ... Q8DGB4 22681901
    2135 4fe1:L (4.9228) BS08 CLA ? GO:0009522 ... Q8DGB4 22681901
    2136 4fe1:M (4.9228) BS01 CLA ? GO:0009522 ... P0A403 22681901
    2137 4h0l:B (3.25) BS03 CLA ? GO:0009055 ... P83792 23440205
    2138 4h13:B (3.07) BS04 CLA ? GO:0009055 ... P83792 23440205
    2139 4h44:A (2.7) BS05 CLA ? GO:0009055 ... P0A384 23440205
    2140 4h44:B (2.7) BS03 CLA ? GO:0009055 ... Q93SX1 23440205
    2141 4i7z:A (2.803) BS05 CLA ? GO:0009055 ... P83791 23514009
    2142 4i7z:B (2.803) BS02 CLA ? GO:0009055 ... P83792 23514009
    2143 4il6:A (2.1) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 23426624
    2144 4il6:A (2.1) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 23426624
    2145 4il6:A (2.1) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 23426624
    2146 4il6:A (2.1) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 23426624
    2147 4il6:A (2.1) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 23426624
    2148 4il6:B (2.1) BS01 CLA ? GO:0009521 ... D0VWR1 23426624
    2149 4il6:B (2.1) BS02 CLA ? GO:0009521 ... D0VWR1 23426624
    2150 4il6:B (2.1) BS03 CLA ? GO:0009521 ... D0VWR1 23426624
    2151 4il6:B (2.1) BS04 CLA ? GO:0009521 ... D0VWR1 23426624
    2152 4il6:B (2.1) BS05 CLA ? GO:0009521 ... D0VWR1 23426624
    2153 4il6:B (2.1) BS06 CLA ? GO:0009521 ... D0VWR1 23426624
    2154 4il6:B (2.1) BS07 CLA ? GO:0009521 ... D0VWR1 23426624
    2155 4il6:B (2.1) BS08 CLA ? GO:0009521 ... D0VWR1 23426624
    2156 4il6:B (2.1) BS09 CLA ? GO:0009521 ... D0VWR1 23426624
    2157 4il6:B (2.1) BS10 CLA ? GO:0009521 ... D0VWR1 23426624
    2158 4il6:B (2.1) BS11 CLA ? GO:0009521 ... D0VWR1 23426624
    2159 4il6:B (2.1) BS12 CLA ? GO:0009521 ... D0VWR1 23426624
    2160 4il6:B (2.1) BS13 CLA ? GO:0009521 ... D0VWR1 23426624
    2161 4il6:B (2.1) BS14 CLA ? GO:0009521 ... D0VWR1 23426624
    2162 4il6:B (2.1) BS15 CLA ? GO:0009521 ... D0VWR1 23426624
    2163 4il6:B (2.1) BS16 CLA ? GO:0009521 ... D0VWR1 23426624
    2164 4il6:C (2.1) BS02 CLA ? GO:0005737 ... D0VWR7 23426624
    2165 4il6:C (2.1) BS03 CLA ? GO:0005737 ... D0VWR7 23426624
    2166 4il6:C (2.1) BS04 CLA ? GO:0005737 ... D0VWR7 23426624
    2167 4il6:C (2.1) BS05 CLA ? GO:0005737 ... D0VWR7 23426624
    2168 4il6:C (2.1) BS06 CLA ? GO:0005737 ... D0VWR7 23426624
    2169 4il6:C (2.1) BS07 CLA ? GO:0005737 ... D0VWR7 23426624
    2170 4il6:C (2.1) BS08 CLA ? GO:0005737 ... D0VWR7 23426624
    2171 4il6:C (2.1) BS09 CLA ? GO:0005737 ... D0VWR7 23426624
    2172 4il6:C (2.1) BS10 CLA ? GO:0005737 ... D0VWR7 23426624
    2173 4il6:C (2.1) BS11 CLA ? GO:0005737 ... D0VWR7 23426624
    2174 4il6:C (2.1) BS12 CLA ? GO:0005737 ... D0VWR7 23426624
    2175 4il6:C (2.1) BS13 CLA ? GO:0005737 ... D0VWR7 23426624
    2176 4il6:C (2.1) BS14 CLA ? GO:0005737 ... D0VWR7 23426624
    2177 4il6:D (2.1) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 23426624
    2178 4il6:D (2.1) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 23426624
    2179 4il6:D (2.1) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 23426624
    2180 4il6:D (2.1) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 23426624
    2181 4il6:D (2.1) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 23426624
    2182 4il6:H (2.1) BS01 CLA ? GO:0009523 ... P19052 23426624
    2183 4il6:H (2.1) BS02 CLA ? GO:0009523 ... P19052 23426624
    2184 4il6:H (2.1) BS03 CLA ? GO:0009523 ... P19052 23426624
    2185 4il6:I (2.1) BS01 CLA ? GO:0005737 ... P12240 23426624
    2186 4il6:I (2.1) BS02 CLA ? GO:0005737 ... P12240 23426624
    2187 4il6:K (2.1) BS01 CLA ? GO:0005737 ... P19054 23426624
    2188 4il6:K (2.1) BS02 CLA ? GO:0005737 ... P19054 23426624
    2189 4il6:X (2.1) BS01 CLA ? GO:0009523 ... D0VWR4 23426624
    2190 4il6:a (2.1) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 23426624
    2191 4il6:a (2.1) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 23426624
    2192 4il6:a (2.1) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 23426624
    2193 4il6:a (2.1) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 23426624
    2194 4il6:a (2.1) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 23426624
    2195 4il6:b (2.1) BS01 CLA ? GO:0009521 ... D0VWR1 23426624
    2196 4il6:b (2.1) BS02 CLA ? GO:0009521 ... D0VWR1 23426624
    2197 4il6:b (2.1) BS03 CLA ? GO:0009521 ... D0VWR1 23426624
    2198 4il6:b (2.1) BS04 CLA ? GO:0009521 ... D0VWR1 23426624
    2199 4il6:b (2.1) BS05 CLA ? GO:0009521 ... D0VWR1 23426624
    2200 4il6:b (2.1) BS06 CLA ? GO:0009521 ... D0VWR1 23426624

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218