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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 3pcq:B (8.984) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 21293373
    1802 3pcq:F (8.984) BS01 CLA ? GO:0009522 ... P0A401 21293373
    1803 3pcq:F (8.984) BS02 CLA ? GO:0009522 ... P0A401 21293373
    1804 3pcq:F (8.984) BS03 CLA ? GO:0009522 ... P0A401 21293373
    1805 3pcq:F (8.984) BS04 CLA ? GO:0009522 ... P0A401 21293373
    1806 3pcq:I (8.984) BS01 CLA ? GO:0009522 ... P0A427 21293373
    1807 3pcq:I (8.984) BS02 CLA ? GO:0009522 ... P0A427 21293373
    1808 3pcq:I (8.984) BS03 CLA ? GO:0009522 ... P0A427 21293373
    1809 3pcq:I (8.984) BS04 CLA ? GO:0009522 ... P0A427 21293373
    1810 3pcq:J (8.984) BS01 CLA ? GO:0009522 ... P0A429 21293373
    1811 3pcq:J (8.984) BS02 CLA ? GO:0009522 ... P0A429 21293373
    1812 3pcq:J (8.984) BS03 CLA ? GO:0009522 ... P0A429 21293373
    1813 3pcq:J (8.984) BS04 CLA ? GO:0009522 ... P0A429 21293373
    1814 3pcq:J (8.984) BS05 CLA ? GO:0009522 ... P0A429 21293373
    1815 3pcq:J (8.984) BS06 CLA ? GO:0009522 ... P0A429 21293373
    1816 3pcq:K (8.984) BS01 CLA ? GO:0009522 ... P0A425 21293373
    1817 3pcq:L (8.984) BS01 CLA ? GO:0009522 ... Q8DGB4 21293373
    1818 3pcq:L (8.984) BS02 CLA ? GO:0009522 ... Q8DGB4 21293373
    1819 3pcq:L (8.984) BS03 CLA ? GO:0009522 ... Q8DGB4 21293373
    1820 3pcq:L (8.984) BS05 CLA ? GO:0009522 ... Q8DGB4 21293373
    1821 3pcq:L (8.984) BS06 CLA ? GO:0009522 ... Q8DGB4 21293373
    1822 3pcq:L (8.984) BS07 CLA ? GO:0009522 ... Q8DGB4 21293373
    1823 3pcq:M (8.984) BS01 CLA ? GO:0009522 ... P0A403 21293373
    1824 3pcq:M (8.984) BS02 CLA ? GO:0009522 ... P0A403 21293373
    1825 3pl9:A (2.8) BS01 CLA ? GO:0009416 ... F2Z293 21297637
    1826 3pl9:A (2.8) BS02 CLA ? GO:0009416 ... F2Z293 21297637
    1827 3pl9:A (2.8) BS03 CLA ? GO:0009416 ... F2Z293 21297637
    1828 3pl9:A (2.8) BS07 CLA ? GO:0009416 ... F2Z293 21297637
    1829 3pl9:A (2.8) BS08 CLA ? GO:0009416 ... F2Z293 21297637
    1830 3pl9:A (2.8) BS09 CLA ? GO:0009416 ... F2Z293 21297637
    1831 3pl9:A (2.8) BS10 CLA ? GO:0009416 ... F2Z293 21297637
    1832 3pl9:A (2.8) BS11 CLA ? GO:0009416 ... F2Z293 21297637
    1833 3pl9:A (2.8) BS13 CLA ? GO:0009416 ... F2Z293 21297637
    1834 3wu2:A (1.9) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    1835 3wu2:A (1.9) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    1836 3wu2:A (1.9) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    1837 3wu2:A (1.9) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    1838 3wu2:A (1.9) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    1839 3wu2:B (1.9) BS01 CLA ? GO:0009521 ... D0VWR1 21499260
    1840 3wu2:B (1.9) BS02 CLA ? GO:0009521 ... D0VWR1 21499260
    1841 3wu2:B (1.9) BS03 CLA ? GO:0009521 ... D0VWR1 21499260
    1842 3wu2:B (1.9) BS04 CLA ? GO:0009521 ... D0VWR1 21499260
    1843 3wu2:B (1.9) BS05 CLA ? GO:0009521 ... D0VWR1 21499260
    1844 3wu2:B (1.9) BS06 CLA ? GO:0009521 ... D0VWR1 21499260
    1845 3wu2:B (1.9) BS07 CLA ? GO:0009521 ... D0VWR1 21499260
    1846 3wu2:B (1.9) BS08 CLA ? GO:0009521 ... D0VWR1 21499260
    1847 3wu2:B (1.9) BS09 CLA ? GO:0009521 ... D0VWR1 21499260
    1848 3wu2:B (1.9) BS10 CLA ? GO:0009521 ... D0VWR1 21499260
    1849 3wu2:B (1.9) BS11 CLA ? GO:0009521 ... D0VWR1 21499260
    1850 3wu2:B (1.9) BS12 CLA ? GO:0009521 ... D0VWR1 21499260
    1851 3wu2:B (1.9) BS13 CLA ? GO:0009521 ... D0VWR1 21499260
    1852 3wu2:B (1.9) BS14 CLA ? GO:0009521 ... D0VWR1 21499260
    1853 3wu2:B (1.9) BS15 CLA ? GO:0009521 ... D0VWR1 21499260
    1854 3wu2:B (1.9) BS16 CLA ? GO:0009521 ... D0VWR1 21499260
    1855 3wu2:C (1.9) BS02 CLA ? GO:0005737 ... D0VWR7 21499260
    1856 3wu2:C (1.9) BS03 CLA ? GO:0005737 ... D0VWR7 21499260
    1857 3wu2:C (1.9) BS04 CLA ? GO:0005737 ... D0VWR7 21499260
    1858 3wu2:C (1.9) BS05 CLA ? GO:0005737 ... D0VWR7 21499260
    1859 3wu2:C (1.9) BS06 CLA ? GO:0005737 ... D0VWR7 21499260
    1860 3wu2:C (1.9) BS07 CLA ? GO:0005737 ... D0VWR7 21499260
    1861 3wu2:C (1.9) BS08 CLA ? GO:0005737 ... D0VWR7 21499260
    1862 3wu2:C (1.9) BS09 CLA ? GO:0005737 ... D0VWR7 21499260
    1863 3wu2:C (1.9) BS10 CLA ? GO:0005737 ... D0VWR7 21499260
    1864 3wu2:C (1.9) BS11 CLA ? GO:0005737 ... D0VWR7 21499260
    1865 3wu2:C (1.9) BS12 CLA ? GO:0005737 ... D0VWR7 21499260
    1866 3wu2:C (1.9) BS13 CLA ? GO:0005737 ... D0VWR7 21499260
    1867 3wu2:C (1.9) BS14 CLA ? GO:0005737 ... D0VWR7 21499260
    1868 3wu2:D (1.9) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    1869 3wu2:D (1.9) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    1870 3wu2:D (1.9) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    1871 3wu2:D (1.9) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    1872 3wu2:D (1.9) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    1873 3wu2:D (1.9) BS10 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    1874 3wu2:H (1.9) BS01 CLA ? GO:0009523 ... P19052 21499260
    1875 3wu2:H (1.9) BS02 CLA ? GO:0009523 ... P19052 21499260
    1876 3wu2:H (1.9) BS03 CLA ? GO:0009523 ... P19052 21499260
    1877 3wu2:I (1.9) BS01 CLA ? GO:0005737 ... P12240 21499260
    1878 3wu2:K (1.9) BS02 CLA ? GO:0005737 ... P19054 21499260
    1879 3wu2:K (1.9) BS03 CLA ? GO:0005737 ... P19054 21499260
    1880 3wu2:X (1.9) BS01 CLA ? GO:0009523 ... D0VWR4 21499260
    1881 3wu2:a (1.9) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    1882 3wu2:a (1.9) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    1883 3wu2:a (1.9) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    1884 3wu2:a (1.9) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    1885 3wu2:a (1.9) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    1886 3wu2:b (1.9) BS01 CLA ? GO:0009521 ... D0VWR1 21499260
    1887 3wu2:b (1.9) BS02 CLA ? GO:0009521 ... D0VWR1 21499260
    1888 3wu2:b (1.9) BS03 CLA ? GO:0009521 ... D0VWR1 21499260
    1889 3wu2:b (1.9) BS04 CLA ? GO:0009521 ... D0VWR1 21499260
    1890 3wu2:b (1.9) BS05 CLA ? GO:0009521 ... D0VWR1 21499260
    1891 3wu2:b (1.9) BS06 CLA ? GO:0009521 ... D0VWR1 21499260
    1892 3wu2:b (1.9) BS07 CLA ? GO:0009521 ... D0VWR1 21499260
    1893 3wu2:b (1.9) BS08 CLA ? GO:0009521 ... D0VWR1 21499260
    1894 3wu2:b (1.9) BS09 CLA ? GO:0009521 ... D0VWR1 21499260
    1895 3wu2:b (1.9) BS10 CLA ? GO:0009521 ... D0VWR1 21499260
    1896 3wu2:b (1.9) BS11 CLA ? GO:0009521 ... D0VWR1 21499260
    1897 3wu2:b (1.9) BS12 CLA ? GO:0009521 ... D0VWR1 21499260
    1898 3wu2:b (1.9) BS13 CLA ? GO:0009521 ... D0VWR1 21499260
    1899 3wu2:b (1.9) BS14 CLA ? GO:0009521 ... D0VWR1 21499260
    1900 3wu2:b (1.9) BS15 CLA ? GO:0009521 ... D0VWR1 21499260
    1901 3wu2:b (1.9) BS16 CLA ? GO:0009521 ... D0VWR1 21499260
    1902 3wu2:c (1.9) BS03 CLA ? GO:0005737 ... D0VWR7 21499260
    1903 3wu2:c (1.9) BS04 CLA ? GO:0005737 ... D0VWR7 21499260
    1904 3wu2:c (1.9) BS05 CLA ? GO:0005737 ... D0VWR7 21499260
    1905 3wu2:c (1.9) BS06 CLA ? GO:0005737 ... D0VWR7 21499260
    1906 3wu2:c (1.9) BS07 CLA ? GO:0005737 ... D0VWR7 21499260
    1907 3wu2:c (1.9) BS08 CLA ? GO:0005737 ... D0VWR7 21499260
    1908 3wu2:c (1.9) BS09 CLA ? GO:0005737 ... D0VWR7 21499260
    1909 3wu2:c (1.9) BS10 CLA ? GO:0005737 ... D0VWR7 21499260
    1910 3wu2:c (1.9) BS11 CLA ? GO:0005737 ... D0VWR7 21499260
    1911 3wu2:c (1.9) BS12 CLA ? GO:0005737 ... D0VWR7 21499260
    1912 3wu2:c (1.9) BS13 CLA ? GO:0005737 ... D0VWR7 21499260
    1913 3wu2:c (1.9) BS14 CLA ? GO:0005737 ... D0VWR7 21499260
    1914 3wu2:c (1.9) BS15 CLA ? GO:0005737 ... D0VWR7 21499260
    1915 3wu2:d (1.9) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    1916 3wu2:d (1.9) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    1917 3wu2:d (1.9) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    1918 3wu2:d (1.9) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    1919 3wu2:d (1.9) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    1920 3wu2:h (1.9) BS01 CLA ? GO:0009523 ... P19052 21499260
    1921 3wu2:h (1.9) BS02 CLA ? GO:0009523 ... P19052 21499260
    1922 3wu2:h (1.9) BS03 CLA ? GO:0009523 ... P19052 21499260
    1923 3wu2:i (1.9) BS01 CLA ? GO:0005737 ... P12240 21499260
    1924 3wu2:k (1.9) BS02 CLA ? GO:0005737 ... P19054 21499260
    1925 3wu2:k (1.9) BS03 CLA ? GO:0005737 ... P19054 21499260
    1926 3wu2:x (1.9) BS01 CLA ? GO:0009523 ... D0VWR4 21499260
    1927 3wu2:z (1.9) BS02 CLA ? GO:0009523 ... D0VWR5 21499260
    1928 4fby:A (6.56) BS01 CLA 1.10.3.9 GO:0005506 ... P0A444 22665786
    1929 4fby:A (6.56) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 22665786
    1930 4fby:A (6.56) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 22665786
    1931 4fby:A (6.56) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 22665786
    1932 4fby:A (6.56) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 22665786
    1933 4fby:B (6.56) BS01 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1934 4fby:B (6.56) BS02 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1935 4fby:B (6.56) BS03 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1936 4fby:B (6.56) BS04 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1937 4fby:B (6.56) BS05 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1938 4fby:B (6.56) BS06 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1939 4fby:B (6.56) BS07 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1940 4fby:B (6.56) BS08 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1941 4fby:B (6.56) BS09 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1942 4fby:B (6.56) BS10 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1943 4fby:B (6.56) BS11 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1944 4fby:B (6.56) BS12 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1945 4fby:B (6.56) BS13 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1946 4fby:B (6.56) BS14 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1947 4fby:B (6.56) BS15 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1948 4fby:B (6.56) BS16 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1949 4fby:C (6.56) BS01 CLA ? GO:0005737 ... Q8DIF8 22665786
    1950 4fby:C (6.56) BS02 CLA ? GO:0005737 ... Q8DIF8 22665786
    1951 4fby:C (6.56) BS03 CLA ? GO:0005737 ... Q8DIF8 22665786
    1952 4fby:C (6.56) BS04 CLA ? GO:0005737 ... Q8DIF8 22665786
    1953 4fby:C (6.56) BS05 CLA ? GO:0005737 ... Q8DIF8 22665786
    1954 4fby:C (6.56) BS06 CLA ? GO:0005737 ... Q8DIF8 22665786
    1955 4fby:C (6.56) BS07 CLA ? GO:0005737 ... Q8DIF8 22665786
    1956 4fby:C (6.56) BS08 CLA ? GO:0005737 ... Q8DIF8 22665786
    1957 4fby:C (6.56) BS09 CLA ? GO:0005737 ... Q8DIF8 22665786
    1958 4fby:C (6.56) BS10 CLA ? GO:0005737 ... Q8DIF8 22665786
    1959 4fby:C (6.56) BS11 CLA ? GO:0005737 ... Q8DIF8 22665786
    1960 4fby:C (6.56) BS12 CLA ? GO:0005737 ... Q8DIF8 22665786
    1961 4fby:C (6.56) BS13 CLA ? GO:0005737 ... Q8DIF8 22665786
    1962 4fby:D (6.56) BS01 CLA 1.10.3.9 GO:0005506 ... Q8CM25 22665786
    1963 4fby:D (6.56) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 22665786
    1964 4fby:D (6.56) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 22665786
    1965 4fby:D (6.56) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 22665786
    1966 4fby:D (6.56) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 22665786
    1967 4fby:G (6.56) BS01 CLA 1.10.3.9 GO:0005506 ... P0A444 22665786
    1968 4fby:G (6.56) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 22665786
    1969 4fby:G (6.56) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 22665786
    1970 4fby:G (6.56) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 22665786
    1971 4fby:G (6.56) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 22665786
    1972 4fby:H (6.56) BS01 CLA ? GO:0009523 ... Q8DJ43 22665786
    1973 4fby:H (6.56) BS02 CLA ? GO:0009523 ... Q8DJ43 22665786
    1974 4fby:H (6.56) BS03 CLA ? GO:0009523 ... Q8DJ43 22665786
    1975 4fby:I (6.56) BS01 CLA ? GO:0005737 ... Q8DJZ6 22665786
    1976 4fby:K (6.56) BS02 CLA ? GO:0009523 ... Q9F1K9 22665786
    1977 4fby:K (6.56) BS03 CLA ? GO:0009523 ... Q9F1K9 22665786
    1978 4fby:N (6.56) BS01 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1979 4fby:N (6.56) BS02 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1980 4fby:N (6.56) BS03 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1981 4fby:N (6.56) BS04 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1982 4fby:N (6.56) BS05 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1983 4fby:N (6.56) BS06 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1984 4fby:N (6.56) BS07 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1985 4fby:N (6.56) BS08 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1986 4fby:N (6.56) BS09 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1987 4fby:N (6.56) BS10 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1988 4fby:N (6.56) BS11 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1989 4fby:N (6.56) BS12 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1990 4fby:N (6.56) BS13 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1991 4fby:N (6.56) BS14 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1992 4fby:N (6.56) BS15 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1993 4fby:N (6.56) BS16 CLA ? GO:0009521 ... Q8DIQ1 22665786
    1994 4fby:P (6.56) BS01 CLA ? GO:0005737 ... Q8DIF8 22665786
    1995 4fby:P (6.56) BS02 CLA ? GO:0005737 ... Q8DIF8 22665786
    1996 4fby:P (6.56) BS03 CLA ? GO:0005737 ... Q8DIF8 22665786
    1997 4fby:P (6.56) BS04 CLA ? GO:0005737 ... Q8DIF8 22665786
    1998 4fby:P (6.56) BS05 CLA ? GO:0005737 ... Q8DIF8 22665786
    1999 4fby:P (6.56) BS06 CLA ? GO:0005737 ... Q8DIF8 22665786
    2000 4fby:P (6.56) BS07 CLA ? GO:0005737 ... Q8DIF8 22665786

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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