Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 5 6 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 7ymm:42 (3.6) BS06 CL7 ? GO:0009521 ... B0C3E5 38394197
    1002 7ymm:42 (3.6) BS07 CL7 ? GO:0009521 ... B0C3E5 38394197
    1003 7ymm:42 (3.6) BS08 CL7 ? GO:0009521 ... B0C3E5 38394197
    1004 7ymm:42 (3.6) BS09 CL7 ? GO:0009521 ... B0C3E5 38394197
    1005 7ymm:42 (3.6) BS10 CL7 ? GO:0009521 ... B0C3E5 38394197
    1006 7ymm:42 (3.6) BS11 CL7 ? GO:0009521 ... B0C3E5 38394197
    1007 7ymm:42 (3.6) BS12 CL7 ? GO:0009521 ... B0C3E5 38394197
    1008 7ymm:42 (3.6) BS13 CL7 ? GO:0009521 ... B0C3E5 38394197
    1009 7ymm:42 (3.6) BS14 CL7 ? GO:0009521 ... B0C3E5 38394197
    1010 7ymm:42 (3.6) BS15 CL7 ? GO:0009521 ... B0C3E5 38394197
    1011 7ymm:42 (3.6) BS16 CL7 ? GO:0009521 ... B0C3E5 38394197
    1012 7ymm:42 (3.6) BS17 CL7 ? GO:0009521 ... B0C3E5 38394197
    1013 7ymm:42 (3.6) BS18 CL7 ? GO:0009521 ... B0C3E5 38394197
    1014 7ymm:42 (3.6) BS19 CL7 ? GO:0009521 ... B0C3E5 38394197
    1015 7ymm:42 (3.6) BS20 CL7 ? GO:0009521 ... B0C3E5 38394197
    1016 7ymm:42 (3.6) BS21 CL7 ? GO:0009521 ... B0C3E5 38394197
    1017 7ymm:42 (3.6) BS26 CL7 ? GO:0009521 ... B0C3E5 38394197
    1018 7ymm:42 (3.6) BS27 CL7 ? GO:0009521 ... B0C3E5 38394197
    1019 7ymm:42 (3.6) BS28 CL7 ? GO:0009521 ... B0C3E5 38394197
    1020 7ymm:43 (3.6) BS01 CL7 ? GO:0009521 ... B0C6I0 38394197
    1021 7ymm:43 (3.6) BS02 CL7 ? GO:0009521 ... B0C6I0 38394197
    1022 7ymm:43 (3.6) BS04 CL7 ? GO:0009521 ... B0C6I0 38394197
    1023 7ymm:43 (3.6) BS05 CL7 ? GO:0009521 ... B0C6I0 38394197
    1024 7ymm:43 (3.6) BS06 CL7 ? GO:0009521 ... B0C6I0 38394197
    1025 7ymm:43 (3.6) BS07 CL7 ? GO:0009521 ... B0C6I0 38394197
    1026 7ymm:43 (3.6) BS08 CL7 ? GO:0009521 ... B0C6I0 38394197
    1027 7ymm:43 (3.6) BS09 CL7 ? GO:0009521 ... B0C6I0 38394197
    1028 7ymm:43 (3.6) BS10 CL7 ? GO:0009521 ... B0C6I0 38394197
    1029 7ymm:43 (3.6) BS11 CL7 ? GO:0009521 ... B0C6I0 38394197
    1030 7ymm:43 (3.6) BS12 CL7 ? GO:0009521 ... B0C6I0 38394197
    1031 7ymm:43 (3.6) BS13 CL7 ? GO:0009521 ... B0C6I0 38394197
    1032 7ymm:43 (3.6) BS14 CL7 ? GO:0009521 ... B0C6I0 38394197
    1033 7ymm:43 (3.6) BS15 CL7 ? GO:0009521 ... B0C6I0 38394197
    1034 7ymm:43 (3.6) BS16 CL7 ? GO:0009521 ... B0C6I0 38394197
    1035 7ymm:43 (3.6) BS17 CL7 ? GO:0009521 ... B0C6I0 38394197
    1036 7ymm:43 (3.6) BS18 CL7 ? GO:0009521 ... B0C6I0 38394197
    1037 7ymm:43 (3.6) BS19 CL7 ? GO:0009521 ... B0C6I0 38394197
    1038 7ymm:43 (3.6) BS20 CL7 ? GO:0009521 ... B0C6I0 38394197
    1039 7ymm:43 (3.6) BS21 CL7 ? GO:0009521 ... B0C6I0 38394197
    1040 7ymm:43 (3.6) BS26 CL7 ? GO:0009521 ... B0C6I0 38394197
    1041 7ymm:44 (3.6) BS01 CL7 ? GO:0009521 ... B0C3E6 38394197
    1042 7ymm:44 (3.6) BS03 CL7 ? GO:0009521 ... B0C3E6 38394197
    1043 7ymm:44 (3.6) BS04 CL7 ? GO:0009521 ... B0C3E6 38394197
    1044 7ymm:44 (3.6) BS05 CL7 ? GO:0009521 ... B0C3E6 38394197
    1045 7ymm:44 (3.6) BS06 CL7 ? GO:0009521 ... B0C3E6 38394197
    1046 7ymm:44 (3.6) BS07 CL7 ? GO:0009521 ... B0C3E6 38394197
    1047 7ymm:44 (3.6) BS08 CL7 ? GO:0009521 ... B0C3E6 38394197
    1048 7ymm:44 (3.6) BS09 CL7 ? GO:0009521 ... B0C3E6 38394197
    1049 7ymm:44 (3.6) BS10 CL7 ? GO:0009521 ... B0C3E6 38394197
    1050 7ymm:44 (3.6) BS11 CL7 ? GO:0009521 ... B0C3E6 38394197
    1051 7ymm:44 (3.6) BS12 CL7 ? GO:0009521 ... B0C3E6 38394197
    1052 7ymm:44 (3.6) BS13 CL7 ? GO:0009521 ... B0C3E6 38394197
    1053 7ymm:44 (3.6) BS14 CL7 ? GO:0009521 ... B0C3E6 38394197
    1054 7ymm:44 (3.6) BS15 CL7 ? GO:0009521 ... B0C3E6 38394197
    1055 7ymm:44 (3.6) BS16 CL7 ? GO:0009521 ... B0C3E6 38394197
    1056 7ymm:4A (3.6) BS02 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    1057 7ymm:4A (3.6) BS04 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    1058 7ymm:4A (3.6) BS06 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    1059 7ymm:4A (3.6) BS07 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    1060 7ymm:4A (3.6) BS09 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    1061 7ymm:4B (3.6) BS02 CL7 ? GO:0009521 ... B0CFM2 38394197
    1062 7ymm:4B (3.6) BS03 CL7 ? GO:0009521 ... B0CFM2 38394197
    1063 7ymm:4B (3.6) BS04 CL7 ? GO:0009521 ... B0CFM2 38394197
    1064 7ymm:4B (3.6) BS05 CL7 ? GO:0009521 ... B0CFM2 38394197
    1065 7ymm:4B (3.6) BS06 CL7 ? GO:0009521 ... B0CFM2 38394197
    1066 7ymm:4B (3.6) BS07 CL7 ? GO:0009521 ... B0CFM2 38394197
    1067 7ymm:4B (3.6) BS08 CL7 ? GO:0009521 ... B0CFM2 38394197
    1068 7ymm:4B (3.6) BS09 CL7 ? GO:0009521 ... B0CFM2 38394197
    1069 7ymm:4B (3.6) BS10 CL7 ? GO:0009521 ... B0CFM2 38394197
    1070 7ymm:4B (3.6) BS11 CL7 ? GO:0009521 ... B0CFM2 38394197
    1071 7ymm:4B (3.6) BS12 CL7 ? GO:0009521 ... B0CFM2 38394197
    1072 7ymm:4B (3.6) BS13 CL7 ? GO:0009521 ... B0CFM2 38394197
    1073 7ymm:4B (3.6) BS14 CL7 ? GO:0009521 ... B0CFM2 38394197
    1074 7ymm:4B (3.6) BS15 CL7 ? GO:0009521 ... B0CFM2 38394197
    1075 7ymm:4B (3.6) BS16 CL7 ? GO:0009521 ... B0CFM2 38394197
    1076 7ymm:4B (3.6) BS17 CL7 ? GO:0009521 ... B0CFM2 38394197
    1077 7ymm:4B (3.6) BS20 CL7 ? GO:0009521 ... B0CFM2 38394197
    1078 7ymm:4C (3.6) BS02 CL7 ? GO:0005737 ... B0C1V7 38394197
    1079 7ymm:4C (3.6) BS03 CL7 ? GO:0005737 ... B0C1V7 38394197
    1080 7ymm:4C (3.6) BS04 CL7 ? GO:0005737 ... B0C1V7 38394197
    1081 7ymm:4C (3.6) BS05 CL7 ? GO:0005737 ... B0C1V7 38394197
    1082 7ymm:4C (3.6) BS06 CL7 ? GO:0005737 ... B0C1V7 38394197
    1083 7ymm:4C (3.6) BS07 CL7 ? GO:0005737 ... B0C1V7 38394197
    1084 7ymm:4C (3.6) BS08 CL7 ? GO:0005737 ... B0C1V7 38394197
    1085 7ymm:4C (3.6) BS09 CL7 ? GO:0005737 ... B0C1V7 38394197
    1086 7ymm:4C (3.6) BS10 CL7 ? GO:0005737 ... B0C1V7 38394197
    1087 7ymm:4C (3.6) BS11 CL7 ? GO:0005737 ... B0C1V7 38394197
    1088 7ymm:4C (3.6) BS12 CL7 ? GO:0005737 ... B0C1V7 38394197
    1089 7ymm:4C (3.6) BS13 CL7 ? GO:0005737 ... B0C1V7 38394197
    1090 7ymm:4C (3.6) BS14 CL7 ? GO:0005737 ... B0C1V7 38394197
    1091 7ymm:4C (3.6) BS17 CL7 ? GO:0005737 ... B0C1V7 38394197
    1092 7ymm:4D (3.6) BS02 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    1093 7ymm:4D (3.6) BS03 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    1094 7ymm:4D (3.6) BS05 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    1095 7ymm:4D (3.6) BS07 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    1096 7ymm:4D (3.6) BS08 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    1097 7ymm:4H (3.6) BS01 CL7 ? GO:0009523 ... B0CDZ2 38394197
    1098 7ymm:4H (3.6) BS02 CL7 ? GO:0009523 ... B0CDZ2 38394197
    1099 7ymm:4H (3.6) BS03 CL7 ? GO:0009523 ... B0CDZ2 38394197
    1100 7ymm:4H (3.6) BS04 CL7 ? GO:0009523 ... B0CDZ2 38394197
    1101 7ymm:4I (3.6) BS01 CL7 ? GO:0009523 ... B0C5R5 38394197
    1102 7ymm:4I (3.6) BS02 CL7 ? GO:0009523 ... B0C5R5 38394197
    1103 7ymm:4K (3.6) BS01 CL7 ? GO:0005737 ... B0C6Z7 38394197
    1104 7ymm:4K (3.6) BS02 CL7 ? GO:0005737 ... B0C6Z7 38394197
    1105 8eqm:A (2.6) BS09 CL7 ? GO:0009055 ... B4WKH9 36549647
    1106 8eqm:D (2.6) BS06 CL7 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    1107 8eqm:a (2.6) BS09 CL7 ? GO:0009055 ... B4WKH9 36549647
    1108 8eqm:d (2.6) BS06 CL7 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218