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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 7ymi:3 (3.3) BS13 CL7 ? GO:0009521 ... B0C6I0 38394197
    402 7ymi:3 (3.3) BS14 CL7 ? GO:0009521 ... B0C6I0 38394197
    403 7ymi:3 (3.3) BS15 CL7 ? GO:0009521 ... B0C6I0 38394197
    404 7ymi:3 (3.3) BS16 CL7 ? GO:0009521 ... B0C6I0 38394197
    405 7ymi:3 (3.3) BS17 CL7 ? GO:0009521 ... B0C6I0 38394197
    406 7ymi:3 (3.3) BS18 CL7 ? GO:0009521 ... B0C6I0 38394197
    407 7ymi:3 (3.3) BS24 CL7 ? GO:0009521 ... B0C6I0 38394197
    408 7ymi:3 (3.3) BS25 CL7 ? GO:0009521 ... B0C6I0 38394197
    409 7ymi:3 (3.3) BS26 CL7 ? GO:0009521 ... B0C6I0 38394197
    410 7ymi:4 (3.3) BS01 CL7 ? GO:0009521 ... B0C3E6 38394197
    411 7ymi:4 (3.3) BS03 CL7 ? GO:0009521 ... B0C3E6 38394197
    412 7ymi:4 (3.3) BS04 CL7 ? GO:0009521 ... B0C3E6 38394197
    413 7ymi:4 (3.3) BS05 CL7 ? GO:0009521 ... B0C3E6 38394197
    414 7ymi:4 (3.3) BS06 CL7 ? GO:0009521 ... B0C3E6 38394197
    415 7ymi:4 (3.3) BS07 CL7 ? GO:0009521 ... B0C3E6 38394197
    416 7ymi:4 (3.3) BS08 CL7 ? GO:0009521 ... B0C3E6 38394197
    417 7ymi:4 (3.3) BS09 CL7 ? GO:0009521 ... B0C3E6 38394197
    418 7ymi:4 (3.3) BS10 CL7 ? GO:0009521 ... B0C3E6 38394197
    419 7ymi:4 (3.3) BS11 CL7 ? GO:0009521 ... B0C3E6 38394197
    420 7ymi:4 (3.3) BS12 CL7 ? GO:0009521 ... B0C3E6 38394197
    421 7ymi:4 (3.3) BS13 CL7 ? GO:0009521 ... B0C3E6 38394197
    422 7ymi:4 (3.3) BS14 CL7 ? GO:0009521 ... B0C3E6 38394197
    423 7ymi:4 (3.3) BS15 CL7 ? GO:0009521 ... B0C3E6 38394197
    424 7ymi:4 (3.3) BS16 CL7 ? GO:0009521 ... B0C3E6 38394197
    425 7ymi:5 (3.3) BS03 CL7 ? GO:0009521 ... B0C576 38394197
    426 7ymi:5 (3.3) BS04 CL7 ? GO:0009521 ... B0C576 38394197
    427 7ymi:5 (3.3) BS05 CL7 ? GO:0009521 ... B0C576 38394197
    428 7ymi:5 (3.3) BS06 CL7 ? GO:0009521 ... B0C576 38394197
    429 7ymi:5 (3.3) BS07 CL7 ? GO:0009521 ... B0C576 38394197
    430 7ymi:5 (3.3) BS08 CL7 ? GO:0009521 ... B0C576 38394197
    431 7ymi:5 (3.3) BS09 CL7 ? GO:0009521 ... B0C576 38394197
    432 7ymi:5 (3.3) BS10 CL7 ? GO:0009521 ... B0C576 38394197
    433 7ymi:5 (3.3) BS11 CL7 ? GO:0009521 ... B0C576 38394197
    434 7ymi:5 (3.3) BS12 CL7 ? GO:0009521 ... B0C576 38394197
    435 7ymi:5 (3.3) BS13 CL7 ? GO:0009521 ... B0C576 38394197
    436 7ymi:5 (3.3) BS14 CL7 ? GO:0009521 ... B0C576 38394197
    437 7ymi:5 (3.3) BS15 CL7 ? GO:0009521 ... B0C576 38394197
    438 7ymi:5 (3.3) BS16 CL7 ? GO:0009521 ... B0C576 38394197
    439 7ymi:5 (3.3) BS17 CL7 ? GO:0009521 ... B0C576 38394197
    440 7ymi:5 (3.3) BS18 CL7 ? GO:0009521 ... B0C576 38394197
    441 7ymi:5 (3.3) BS19 CL7 ? GO:0009521 ... B0C576 38394197
    442 7ymi:5 (3.3) BS20 CL7 ? GO:0009521 ... B0C576 38394197
    443 7ymi:5 (3.3) BS21 CL7 ? GO:0009521 ... B0C576 38394197
    444 7ymi:6 (3.3) BS01 CL7 ? GO:0009521 ... B0C3E5 38394197
    445 7ymi:6 (3.3) BS04 CL7 ? GO:0009521 ... B0C3E5 38394197
    446 7ymi:6 (3.3) BS05 CL7 ? GO:0009521 ... B0C3E5 38394197
    447 7ymi:6 (3.3) BS06 CL7 ? GO:0009521 ... B0C3E5 38394197
    448 7ymi:6 (3.3) BS07 CL7 ? GO:0009521 ... B0C3E5 38394197
    449 7ymi:6 (3.3) BS08 CL7 ? GO:0009521 ... B0C3E5 38394197
    450 7ymi:6 (3.3) BS09 CL7 ? GO:0009521 ... B0C3E5 38394197
    451 7ymi:6 (3.3) BS10 CL7 ? GO:0009521 ... B0C3E5 38394197
    452 7ymi:6 (3.3) BS11 CL7 ? GO:0009521 ... B0C3E5 38394197
    453 7ymi:6 (3.3) BS12 CL7 ? GO:0009521 ... B0C3E5 38394197
    454 7ymi:6 (3.3) BS13 CL7 ? GO:0009521 ... B0C3E5 38394197
    455 7ymi:6 (3.3) BS14 CL7 ? GO:0009521 ... B0C3E5 38394197
    456 7ymi:6 (3.3) BS15 CL7 ? GO:0009521 ... B0C3E5 38394197
    457 7ymi:6 (3.3) BS16 CL7 ? GO:0009521 ... B0C3E5 38394197
    458 7ymi:6 (3.3) BS17 CL7 ? GO:0009521 ... B0C3E5 38394197
    459 7ymi:6 (3.3) BS18 CL7 ? GO:0009521 ... B0C3E5 38394197
    460 7ymi:6 (3.3) BS19 CL7 ? GO:0009521 ... B0C3E5 38394197
    461 7ymi:6 (3.3) BS20 CL7 ? GO:0009521 ... B0C3E5 38394197
    462 7ymi:6 (3.3) BS21 CL7 ? GO:0009521 ... B0C3E5 38394197
    463 7ymi:6 (3.3) BS26 CL7 ? GO:0009521 ... B0C3E5 38394197
    464 7ymi:6 (3.3) BS27 CL7 ? GO:0009521 ... B0C3E5 38394197
    465 7ymi:6 (3.3) BS28 CL7 ? GO:0009521 ... B0C3E5 38394197
    466 7ymi:7 (3.3) BS01 CL7 ? GO:0009521 ... B0C6I0 38394197
    467 7ymi:7 (3.3) BS02 CL7 ? GO:0009521 ... B0C6I0 38394197
    468 7ymi:7 (3.3) BS04 CL7 ? GO:0009521 ... B0C6I0 38394197
    469 7ymi:7 (3.3) BS05 CL7 ? GO:0009521 ... B0C6I0 38394197
    470 7ymi:7 (3.3) BS06 CL7 ? GO:0009521 ... B0C6I0 38394197
    471 7ymi:7 (3.3) BS07 CL7 ? GO:0009521 ... B0C6I0 38394197
    472 7ymi:7 (3.3) BS08 CL7 ? GO:0009521 ... B0C6I0 38394197
    473 7ymi:7 (3.3) BS09 CL7 ? GO:0009521 ... B0C6I0 38394197
    474 7ymi:7 (3.3) BS10 CL7 ? GO:0009521 ... B0C6I0 38394197
    475 7ymi:7 (3.3) BS11 CL7 ? GO:0009521 ... B0C6I0 38394197
    476 7ymi:7 (3.3) BS12 CL7 ? GO:0009521 ... B0C6I0 38394197
    477 7ymi:7 (3.3) BS13 CL7 ? GO:0009521 ... B0C6I0 38394197
    478 7ymi:7 (3.3) BS14 CL7 ? GO:0009521 ... B0C6I0 38394197
    479 7ymi:7 (3.3) BS15 CL7 ? GO:0009521 ... B0C6I0 38394197
    480 7ymi:7 (3.3) BS16 CL7 ? GO:0009521 ... B0C6I0 38394197
    481 7ymi:7 (3.3) BS17 CL7 ? GO:0009521 ... B0C6I0 38394197
    482 7ymi:7 (3.3) BS18 CL7 ? GO:0009521 ... B0C6I0 38394197
    483 7ymi:7 (3.3) BS19 CL7 ? GO:0009521 ... B0C6I0 38394197
    484 7ymi:7 (3.3) BS20 CL7 ? GO:0009521 ... B0C6I0 38394197
    485 7ymi:7 (3.3) BS21 CL7 ? GO:0009521 ... B0C6I0 38394197
    486 7ymi:7 (3.3) BS26 CL7 ? GO:0009521 ... B0C6I0 38394197
    487 7ymi:8 (3.3) BS01 CL7 ? GO:0009521 ... B0C3E6 38394197
    488 7ymi:8 (3.3) BS03 CL7 ? GO:0009521 ... B0C3E6 38394197
    489 7ymi:8 (3.3) BS04 CL7 ? GO:0009521 ... B0C3E6 38394197
    490 7ymi:8 (3.3) BS05 CL7 ? GO:0009521 ... B0C3E6 38394197
    491 7ymi:8 (3.3) BS06 CL7 ? GO:0009521 ... B0C3E6 38394197
    492 7ymi:8 (3.3) BS07 CL7 ? GO:0009521 ... B0C3E6 38394197
    493 7ymi:8 (3.3) BS08 CL7 ? GO:0009521 ... B0C3E6 38394197
    494 7ymi:8 (3.3) BS09 CL7 ? GO:0009521 ... B0C3E6 38394197
    495 7ymi:8 (3.3) BS10 CL7 ? GO:0009521 ... B0C3E6 38394197
    496 7ymi:8 (3.3) BS11 CL7 ? GO:0009521 ... B0C3E6 38394197
    497 7ymi:8 (3.3) BS12 CL7 ? GO:0009521 ... B0C3E6 38394197
    498 7ymi:8 (3.3) BS13 CL7 ? GO:0009521 ... B0C3E6 38394197
    499 7ymi:8 (3.3) BS14 CL7 ? GO:0009521 ... B0C3E6 38394197
    500 7ymi:8 (3.3) BS15 CL7 ? GO:0009521 ... B0C3E6 38394197
    501 7ymi:8 (3.3) BS16 CL7 ? GO:0009521 ... B0C3E6 38394197
    502 7ymi:A (3.3) BS02 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    503 7ymi:A (3.3) BS04 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    504 7ymi:A (3.3) BS06 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    505 7ymi:A (3.3) BS07 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    506 7ymi:A (3.3) BS09 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    507 7ymi:B (3.3) BS01 CL7 ? GO:0009521 ... B0CFM2 38394197
    508 7ymi:B (3.3) BS02 CL7 ? GO:0009521 ... B0CFM2 38394197
    509 7ymi:B (3.3) BS03 CL7 ? GO:0009521 ... B0CFM2 38394197
    510 7ymi:B (3.3) BS04 CL7 ? GO:0009521 ... B0CFM2 38394197
    511 7ymi:B (3.3) BS05 CL7 ? GO:0009521 ... B0CFM2 38394197
    512 7ymi:B (3.3) BS06 CL7 ? GO:0009521 ... B0CFM2 38394197
    513 7ymi:B (3.3) BS07 CL7 ? GO:0009521 ... B0CFM2 38394197
    514 7ymi:B (3.3) BS08 CL7 ? GO:0009521 ... B0CFM2 38394197
    515 7ymi:B (3.3) BS09 CL7 ? GO:0009521 ... B0CFM2 38394197
    516 7ymi:B (3.3) BS10 CL7 ? GO:0009521 ... B0CFM2 38394197
    517 7ymi:B (3.3) BS11 CL7 ? GO:0009521 ... B0CFM2 38394197
    518 7ymi:B (3.3) BS12 CL7 ? GO:0009521 ... B0CFM2 38394197
    519 7ymi:B (3.3) BS13 CL7 ? GO:0009521 ... B0CFM2 38394197
    520 7ymi:B (3.3) BS14 CL7 ? GO:0009521 ... B0CFM2 38394197
    521 7ymi:B (3.3) BS15 CL7 ? GO:0009521 ... B0CFM2 38394197
    522 7ymi:B (3.3) BS16 CL7 ? GO:0009521 ... B0CFM2 38394197
    523 7ymi:B (3.3) BS19 CL7 ? GO:0009521 ... B0CFM2 38394197
    524 7ymi:C (3.3) BS02 CL7 ? GO:0005737 ... B0C1V7 38394197
    525 7ymi:C (3.3) BS03 CL7 ? GO:0005737 ... B0C1V7 38394197
    526 7ymi:C (3.3) BS04 CL7 ? GO:0005737 ... B0C1V7 38394197
    527 7ymi:C (3.3) BS05 CL7 ? GO:0005737 ... B0C1V7 38394197
    528 7ymi:C (3.3) BS06 CL7 ? GO:0005737 ... B0C1V7 38394197
    529 7ymi:C (3.3) BS07 CL7 ? GO:0005737 ... B0C1V7 38394197
    530 7ymi:C (3.3) BS08 CL7 ? GO:0005737 ... B0C1V7 38394197
    531 7ymi:C (3.3) BS09 CL7 ? GO:0005737 ... B0C1V7 38394197
    532 7ymi:C (3.3) BS10 CL7 ? GO:0005737 ... B0C1V7 38394197
    533 7ymi:C (3.3) BS11 CL7 ? GO:0005737 ... B0C1V7 38394197
    534 7ymi:C (3.3) BS12 CL7 ? GO:0005737 ... B0C1V7 38394197
    535 7ymi:C (3.3) BS13 CL7 ? GO:0005737 ... B0C1V7 38394197
    536 7ymi:C (3.3) BS14 CL7 ? GO:0005737 ... B0C1V7 38394197
    537 7ymi:C (3.3) BS17 CL7 ? GO:0005737 ... B0C1V7 38394197
    538 7ymi:D (3.3) BS02 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    539 7ymi:D (3.3) BS03 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    540 7ymi:D (3.3) BS05 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    541 7ymi:D (3.3) BS07 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    542 7ymi:D (3.3) BS08 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    543 7ymi:H (3.3) BS01 CL7 ? GO:0009523 ... B0CDZ2 38394197
    544 7ymi:H (3.3) BS02 CL7 ? GO:0009523 ... B0CDZ2 38394197
    545 7ymi:H (3.3) BS03 CL7 ? GO:0009523 ... B0CDZ2 38394197
    546 7ymi:H (3.3) BS04 CL7 ? GO:0009523 ... B0CDZ2 38394197
    547 7ymi:I (3.3) BS01 CL7 ? GO:0009523 ... B0C5R5 38394197
    548 7ymi:I (3.3) BS02 CL7 ? GO:0009523 ... B0C5R5 38394197
    549 7ymi:K (3.3) BS01 CL7 ? GO:0005737 ... B0C6Z7 38394197
    550 7ymi:K (3.3) BS02 CL7 ? GO:0005737 ... B0C6Z7 38394197
    551 7ymi:a (3.3) BS02 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    552 7ymi:a (3.3) BS04 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    553 7ymi:a (3.3) BS06 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    554 7ymi:a (3.3) BS07 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    555 7ymi:a (3.3) BS09 CL7 1.10.3.9 GO:0005506 ... A5A8K9 38394197
    556 7ymi:b (3.3) BS02 CL7 ? GO:0009521 ... B0CFM2 38394197
    557 7ymi:b (3.3) BS03 CL7 ? GO:0009521 ... B0CFM2 38394197
    558 7ymi:b (3.3) BS04 CL7 ? GO:0009521 ... B0CFM2 38394197
    559 7ymi:b (3.3) BS05 CL7 ? GO:0009521 ... B0CFM2 38394197
    560 7ymi:b (3.3) BS06 CL7 ? GO:0009521 ... B0CFM2 38394197
    561 7ymi:b (3.3) BS07 CL7 ? GO:0009521 ... B0CFM2 38394197
    562 7ymi:b (3.3) BS08 CL7 ? GO:0009521 ... B0CFM2 38394197
    563 7ymi:b (3.3) BS09 CL7 ? GO:0009521 ... B0CFM2 38394197
    564 7ymi:b (3.3) BS10 CL7 ? GO:0009521 ... B0CFM2 38394197
    565 7ymi:b (3.3) BS11 CL7 ? GO:0009521 ... B0CFM2 38394197
    566 7ymi:b (3.3) BS12 CL7 ? GO:0009521 ... B0CFM2 38394197
    567 7ymi:b (3.3) BS13 CL7 ? GO:0009521 ... B0CFM2 38394197
    568 7ymi:b (3.3) BS14 CL7 ? GO:0009521 ... B0CFM2 38394197
    569 7ymi:b (3.3) BS15 CL7 ? GO:0009521 ... B0CFM2 38394197
    570 7ymi:b (3.3) BS16 CL7 ? GO:0009521 ... B0CFM2 38394197
    571 7ymi:b (3.3) BS17 CL7 ? GO:0009521 ... B0CFM2 38394197
    572 7ymi:b (3.3) BS20 CL7 ? GO:0009521 ... B0CFM2 38394197
    573 7ymi:c (3.3) BS02 CL7 ? GO:0005737 ... B0C1V7 38394197
    574 7ymi:c (3.3) BS03 CL7 ? GO:0005737 ... B0C1V7 38394197
    575 7ymi:c (3.3) BS04 CL7 ? GO:0005737 ... B0C1V7 38394197
    576 7ymi:c (3.3) BS05 CL7 ? GO:0005737 ... B0C1V7 38394197
    577 7ymi:c (3.3) BS06 CL7 ? GO:0005737 ... B0C1V7 38394197
    578 7ymi:c (3.3) BS07 CL7 ? GO:0005737 ... B0C1V7 38394197
    579 7ymi:c (3.3) BS08 CL7 ? GO:0005737 ... B0C1V7 38394197
    580 7ymi:c (3.3) BS09 CL7 ? GO:0005737 ... B0C1V7 38394197
    581 7ymi:c (3.3) BS10 CL7 ? GO:0005737 ... B0C1V7 38394197
    582 7ymi:c (3.3) BS11 CL7 ? GO:0005737 ... B0C1V7 38394197
    583 7ymi:c (3.3) BS12 CL7 ? GO:0005737 ... B0C1V7 38394197
    584 7ymi:c (3.3) BS13 CL7 ? GO:0005737 ... B0C1V7 38394197
    585 7ymi:c (3.3) BS14 CL7 ? GO:0005737 ... B0C1V7 38394197
    586 7ymi:c (3.3) BS17 CL7 ? GO:0005737 ... B0C1V7 38394197
    587 7ymi:d (3.3) BS02 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    588 7ymi:d (3.3) BS03 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    589 7ymi:d (3.3) BS05 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    590 7ymi:d (3.3) BS07 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    591 7ymi:d (3.3) BS08 CL7 1.10.3.9 GO:0005506 ... B0C1V6 38394197
    592 7ymi:h (3.3) BS01 CL7 ? GO:0009523 ... B0CDZ2 38394197
    593 7ymi:h (3.3) BS02 CL7 ? GO:0009523 ... B0CDZ2 38394197
    594 7ymi:h (3.3) BS03 CL7 ? GO:0009523 ... B0CDZ2 38394197
    595 7ymi:h (3.3) BS04 CL7 ? GO:0009523 ... B0CDZ2 38394197
    596 7ymi:i (3.3) BS01 CL7 ? GO:0009523 ... B0C5R5 38394197
    597 7ymi:i (3.3) BS02 CL7 ? GO:0009523 ... B0C5R5 38394197
    598 7ymi:k (3.3) BS01 CL7 ? GO:0005737 ... B0C6Z7 38394197
    599 7ymi:k (3.3) BS02 CL7 ? GO:0005737 ... B0C6Z7 38394197
    600 7ymm:11 (3.6) BS03 CL7 ? GO:0009521 ... B0C576 38394197
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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