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BioLiP
Download all results in tab-seperated text for 738 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 7bmt:A (1.47) BS01 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    602 7bmt:A (1.47) BS02 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    603 7bmt:A (1.47) BS03 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    604 7bmt:A (1.47) BS04 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    605 7bmu:A (1.9) BS01 CL ? GO:0000439 ... G0RZ08 34426585
    606 7bmv:A (1.9) BS02 CL ? GO:0000439 ... G0RZ08 34426585
    607 7bmw:A (1.9) BS03 CL ? GO:0000439 ... G0RZ08 34426585
    608 7bmx:A (1.9) BS03 CL ? GO:0000439 ... G0RZ08 34426585
    609 7bmy:A (1.8) BS02 CL ? GO:0000439 ... G0RZ08 34426585
    610 7ch1:A (2.6) BS01 CL ? GO:0000139 ... Q7LBE3 32818062
    611 7ch1:A (2.6) BS02 CL ? GO:0000139 ... Q7LBE3 32818062
    612 7ch1:B (2.6) BS01 CL ? GO:0000139 ... Q7LBE3 32818062
    613 7ch1:B (2.6) BS02 CL ? GO:0000139 ... Q7LBE3 32818062
    614 7crj:A (1.65) BS01 CL ? GO:0007602 ... W8VZW3 33753488
    615 7crt:A (1.85) BS01 CL ? GO:0007602 ... W8VZW3 33753488
    616 7crx:A (1.85) BS01 CL ? GO:0007602 ... W8VZW3 33753488
    617 7cry:A (1.85) BS01 CL ? GO:0007602 ... W8VZW3 33753488
    618 7d99:A (2.9) BS02 CL ? GO:0005886 ... Q9Y666 33310850
    619 7d99:A (2.9) BS03 CL ? GO:0005886 ... Q9Y666 33310850
    620 7d99:B (2.9) BS02 CL ? GO:0005886 ... Q9Y666 33310850
    621 7d99:B (2.9) BS03 CL ? GO:0005886 ... Q9Y666 33310850
    622 7jm6:A (2.92) BS02 CL ? GO:0005247 ... Q5ZL60 32749217
    623 7jm6:A (2.92) BS03 CL ? GO:0005247 ... Q5ZL60 32749217
    624 7jm6:A (2.92) BS04 CL ? GO:0005247 ... Q5ZL60 32749217
    625 7jm6:B (2.92) BS02 CL ? GO:0005247 ... Q5ZL60 32749217
    626 7jm6:B (2.92) BS03 CL ? GO:0005247 ... Q5ZL60 32749217
    627 7jm6:B (2.92) BS04 CL ? GO:0005247 ... Q5ZL60 32749217
    628 7jm7:A (2.82) BS02 CL ? GO:0005247 ... P51798 32749217
    629 7jm7:A (2.82) BS03 CL ? GO:0005247 ... P51798 32749217
    630 7jm7:C (2.82) BS02 CL ? GO:0005247 ... P51798 32749217
    631 7jm7:C (2.82) BS03 CL ? GO:0005247 ... P51798 32749217
    632 7li6:A (3.5) BS01 CL ? GO:0016020 ... P31645 34851672
    633 7li9:A (3.9) BS03 CL ? GO:0016020 ... P31645 34851672
    634 7lia:A (3.3) BS02 CL ? GO:0016020 ... P31645 34851672
    635 7lzm:A (1.8) BS01 CL 3.2.1.17 GO:0003796 ... P00720 2062826
    636 7m2v:B (1.8) BS01 CL ? GO:0005198 ... P17574 34866603
    637 7m2v:B (1.8) BS02 CL ? GO:0005198 ... P17574 34866603
    638 7m2v:FX (1.8) BS04 CL ? GO:0005198 ... P17574 34866603
    639 7m2v:H (1.8) BS02 CL ? GO:0005198 ... P17574 34866603
    640 7m2v:K (1.8) BS02 CL ? GO:0005198 ... P17574 34866603
    641 7m2v:NN (1.8) BS04 CL ? GO:0005198 ... P17574 34866603
    642 7m2v:NN (1.8) BS05 CL ? GO:0005198 ... P17574 34866603
    643 7m3t:G (3.2) BS03 CL ? GO:0005198 ... P17574 34866603
    644 7m3t:HH (3.2) BS04 CL ? GO:0005198 ... P17574 34866603
    645 7mgw:A (3.5) BS01 CL ? GO:0016020 ... P31645 34851672
    646 7mxo:A (3.47) BS01 CL ? GO:0006811 ... P55011 36306358
    647 7mxo:B (3.47) BS01 CL ? GO:0006811 ... P55011 36306358
    648 7o8f:A (1.45) BS02 CL ? GO:0007602 ... W8VZW3 35113649
    649 7o8g:A (1.9) BS02 CL ? GO:0007602 ... W8VZW3 35113649
    650 7o8h:A (1.8) BS02 CL ? GO:0007602 ... W8VZW3 35113649
    651 7o8i:A (1.8) BS02 CL ? GO:0007602 ... W8VZW3 35113649
    652 7o8i:A (1.8) BS03 CL ? GO:0007602 ... W8VZW3 35113649
    653 7o8j:A (1.8) BS02 CL ? GO:0007602 ... W8VZW3 35113649
    654 7o8l:A (1.8) BS02 CL ? GO:0007602 ... W8VZW3 35113649
    655 7o8r:A (2.7) BS02 CL ? GO:0007602 ... W8VZW3 35113649
    656 7o8s:A (2.5) BS02 CL ? GO:0007602 ... W8VZW3 35113649
    657 7o8t:A (2.5) BS02 CL ? GO:0007602 ... W8VZW3 35113649
    658 7o8u:A (2.5) BS02 CL ? GO:0007602 ... W8VZW3 35113649
    659 7o8v:A (2.5) BS02 CL ? GO:0007602 ... W8VZW3 35113649
    660 7qne:A (2.7) BS02 CL ? GO:0004888 ... P14867 35355020
    661 7qne:C (2.7) BS03 CL ? GO:0004888 ... P18507 35355020
    662 7qne:D (2.7) BS01 CL ? GO:0004888 ... P14867 35355020
    663 7qow:B (1.2) BS06 CL ? GO:0004035 ... Q93P54 36194497
    664 7qp8:A (1.7) BS05 CL ? GO:0004035 ... Q93P54 36194497
    665 7qp8:B (1.7) BS05 CL ? GO:0004035 ... Q93P54 36194497
    666 7tsh:A (2.145) BS04 CL 1.14.13.39 GO:0004517 ... P29474 35772285
    667 7tsi:A (2.1) BS04 CL 1.14.13.39 GO:0004517 ... P29474 35772285
    668 7tsi:C (2.1) BS04 CL 1.14.13.39 GO:0004517 ... P29474 35772285
    669 7tsn:A (2.08) BS04 CL 1.14.13.39 GO:0004517 ... P29474 35772285
    670 7tsn:B (2.08) BS06 CL 1.14.13.39 GO:0004517 ... P29474 35772285
    671 7tsn:C (2.08) BS04 CL 1.14.13.39 GO:0004517 ... P29474 35772285
    672 7tsp:D (2.0) BS06 CL 1.14.13.39 GO:0004517 ... P29474 35772285
    673 7u55:A (1.97) BS02 CL ? GO:0016020 ... A0A151EDA9 35977989
    674 7uao:A (1.9) BS04 CL 1.14.13.39 GO:0004517 ... P29474 35772285
    675 7vgv:C (2.3) BS02 CL ? GO:0007602 ... W8VZW3 35197289
    676 7w5s:A (1.76) BS02 CL ? GO:0046872 ... A0A1U8X168 35435717
    677 7w5t:A (1.74) BS01 CL ? GO:0046872 ... A0A1U8X168 35435717
    678 7w5v:A (1.81) BS03 CL ? GO:0046872 ... A0A1U8X168 35435717
    679 7y6i:A (2.85) BS01 CL ? GO:0002021 ... P55017 36351028
    680 7y6i:A (2.85) BS03 CL ? GO:0002021 ... P55017 36351028
    681 7y6i:B (2.85) BS01 CL ? GO:0002021 ... P55017 36351028
    682 7y6i:B (2.85) BS03 CL ? GO:0002021 ... P55017 36351028
    683 7yr9:A (1.7) BS02 CL 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    684 7yr9:A (1.7) BS03 CL 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    685 7yr9:B (1.7) BS02 CL 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    686 7yr9:B (1.7) BS03 CL 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    687 7yzz:A (1.29) BS05 CL ? GO:0004035 ... Q93P54 36194497
    688 7zgo:A (2.55) BS03 CL ? GO:0005515 ... P55011 36239040
    689 7zgo:A (2.55) BS04 CL ? GO:0005515 ... P55011 36239040
    690 7zgo:B (2.55) BS03 CL ? GO:0005515 ... P55011 36239040
    691 7zgo:B (2.55) BS04 CL ? GO:0005515 ... P55011 36239040
    692 7zou:A (1.58) BS01 CL N/A GO:0005216 ... N/A 36309497
    693 7zov:A (1.7) BS01 CL N/A GO:0005216 ... N/A 36309497
    694 7zoy:A (1.91) BS01 CL N/A GO:0005216 ... N/A 36309497
    695 8bst:D (2.7) BS02 CL ? GO:0015276 ... P42264 38145505
    696 8cp4:B (3.19) BS02 CL ? GO:0000166 ... Q6LXV7 38100250
    697 8fht:A (3.02) BS02 CL ? GO:0002021 ... P55017 36792826
    698 8fht:B (3.02) BS02 CL ? GO:0002021 ... P55017 36792826
    699 8ga1:A (2.6) BS01 CL ? GO:0005247 ... P37019 38279055
    700 8ga1:B (2.6) BS01 CL ? GO:0005247 ... P37019 38279055
    701 8ga1:B (2.6) BS02 CL ? GO:0005247 ... P37019 38279055
    702 8ga3:A (3.1) BS01 CL ? GO:0005247 ... P37019 38279055
    703 8ga5:A (2.6) BS01 CL ? GO:0005247 ... P37019 38279055
    704 8ga5:A (2.6) BS02 CL ? GO:0005247 ... P37019 38279055
    705 8ga5:B (2.6) BS01 CL ? GO:0005247 ... P37019 38279055
    706 8ga5:B (2.6) BS02 CL ? GO:0005247 ... P37019 38279055
    707 8gah:A (2.9) BS01 CL ? GO:0005247 ... P37019 38279055
    708 8gah:A (2.9) BS02 CL ? GO:0005247 ... P37019 38279055
    709 8gah:B (2.9) BS01 CL ? GO:0005247 ... P37019 38279055
    710 8gnk:A (3.1) BS01 CL ? GO:0003333 ... P23978 37400654
    711 8iab:A (2.96) BS03 CL ? GO:0005247 ... P92941 37573431
    712 8iab:A (2.96) BS04 CL ? GO:0005247 ... P92941 37573431
    713 8iab:A (2.96) BS05 CL ? GO:0005247 ... P92941 37573431
    714 8iab:B (2.96) BS04 CL ? GO:0005247 ... P92941 37573431
    715 8iab:B (2.96) BS05 CL ? GO:0005247 ... P92941 37573431
    716 8iab:B (2.96) BS06 CL ? GO:0005247 ... P92941 37573431
    717 8jev:A (3.06) BS01 CL N/A N/A P51791 39107281
    718 8jev:A (3.06) BS02 CL N/A N/A P51791 39107281
    719 8jev:B (3.06) BS01 CL N/A N/A P51791 39107281
    720 8jev:B (3.06) BS02 CL N/A N/A P51791 39107281
    721 8jgj:A (3.3) BS02 CL N/A N/A P51791 39107281
    722 8jgj:B (3.3) BS02 CL N/A N/A P51791 39107281
    723 8sgw:C (2.5) BS09 CL ? GO:0005886 ... I3L8V6 38184688
    724 8sgw:D (2.5) BS10 CL ? GO:0005886 ... I3L8V6 38184688
    725 8ta2:A (2.74) BS02 CL ? GO:0005247 ... P51788 38345841
    726 8ta2:B (2.74) BS02 CL ? GO:0005247 ... P51788 38345841
    727 8txn:A (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    728 8txn:A (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    729 8txn:D (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    730 8txn:D (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    731 8tys:A (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    732 8tys:C (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    733 8tys:D (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    734 8tys:F (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    735 8yrc:A (1.7) BS01 CL ? GO:0005829 ... A0A0H3JTJ5 38581951
    736 9az7:A (2.0) BS01 CL ? GO:0006355 ... P16113 38595979
    737 9euo:A (3.2) BS05 CL N/A N/A Q7K4Y6 39010681
    738 9eup:A (3.0) BS05 CL N/A N/A Q7K4Y6 39010681
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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