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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 738 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 5bse:B (1.7) BS01 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    402 5bse:C (1.7) BS01 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    403 5bse:D (1.7) BS01 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    404 5bse:E (1.7) BS01 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    405 5bse:G (1.7) BS01 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    406 5bse:I (1.7) BS01 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    407 5bse:J (1.7) BS01 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    408 5bsf:A (1.85) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    409 5bsf:B (1.85) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    410 5bsf:C (1.85) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    411 5bsf:D (1.85) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    412 5bsf:E (1.85) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    413 5bsf:G (1.85) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    414 5bsf:H (1.85) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    415 5bsf:I (1.85) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    416 5bsf:J (1.85) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    417 5bsg:A (1.95) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    418 5bsg:C (1.95) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    419 5bsg:D (1.95) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    420 5bsg:E (1.95) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    421 5bsg:F (1.95) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    422 5bsg:G (1.95) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    423 5bsg:H (1.95) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    424 5bsg:I (1.95) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    425 5bsg:J (1.95) BS02 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    426 5chb:B (1.55) BS01 CL N/A N/A N/A 26136355
    427 5chb:C (1.55) BS01 CL N/A N/A N/A 26136355
    428 5ct4:A (1.49) BS02 CL 3.1.1.3 GO:0004806 ... P37957 26388426
    429 5ct5:A (1.747) BS01 CL 3.1.1.3 GO:0004806 ... P37957 26388426
    430 5ct6:A (1.902) BS01 CL 3.1.1.3 GO:0004806 ... P37957 26388426
    431 5ct6:B (1.902) BS02 CL 3.1.1.3 GO:0004806 ... P37957 26388426
    432 5ct9:A (1.4) BS01 CL 3.1.1.3 GO:0004806 ... P37957 26388426
    433 5cta:A (1.24) BS02 CL 3.1.1.3 GO:0004806 ... P37957 26388426
    434 5cur:A (1.302) BS05 CL 3.1.1.3 GO:0004806 ... P37957 26388426
    435 5cur:A (1.302) BS06 CL 3.1.1.3 GO:0004806 ... P37957 26388426
    436 5d79:A (1.849) BS01 CL 1.1.1.- GO:0016491 ... Q9FI21 27276217
    437 5d79:B (1.849) BS01 CL 1.1.1.- GO:0016491 ... Q9FI21 27276217
    438 5dbj:A (2.75) BS02 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    439 5dbj:A (2.75) BS03 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    440 5dbj:B (2.75) BS02 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    441 5dbj:B (2.75) BS03 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    442 5dbj:C (2.75) BS02 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    443 5dbj:C (2.75) BS03 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    444 5dbj:E (2.75) BS02 CL 1.14.19.56 GO:0000166 ... Q4KCZ0 26416533
    445 5dow:C (1.7) BS06 CL ? GO:0000086 ... P0DP23 28045382
    446 5f14:A (1.148) BS01 CL 3.2.1.17 GO:0003796 ... P00698 26866284
    447 5f16:A (1.2) BS01 CL 3.2.1.17 GO:0003796 ... P00698 26866284
    448 5f53:A (1.8) BS01 CL N/A N/A N/A N/A
    449 5g28:A (1.57) BS01 CL ? GO:0007602 ... W8VZW3 27554809
    450 5g36:A (2.6) BS02 CL ? GO:0005216 ... B0R2U4 27599860
    451 5g54:A (2.0) BS01 CL ? GO:0007602 ... W8VZW3 27554809
    452 5hvp:A (2.0) BS02 CL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2201682
    453 5i0r:A (1.35) BS03 CL 1.13.11.20 GO:0005506 ... P21816 27477048
    454 5i6x:A (3.14) BS02 CL ? GO:0016020 ... P31645 27049939
    455 5lzm:A (1.8) BS01 CL 3.2.1.17 GO:0003796 ... P00720 2062826
    456 5n29:A (2.1) BS01 CL 6.3.4.2 GO:0003883 ... C9ZI73 28333400
    457 5n29:A (2.1) BS02 CL 6.3.4.2 GO:0003883 ... C9ZI73 28333400
    458 5ob6:A (1.88) BS01 CL 3.2.1.17 GO:0003796 ... P00698 28702564
    459 5ob7:A (2.1) BS01 CL 3.2.1.17 GO:0003796 ... P00698 28702564
    460 5ob8:A (1.85) BS01 CL 3.2.1.17 GO:0003796 ... P00698 28702564
    461 5t5n:A (3.1) BS01 CL N/A GO:0005254 ... N/A 27821745
    462 5t5n:A (3.1) BS02 CL N/A GO:0005254 ... N/A 27821745
    463 5t5n:A (3.1) BS04 CL N/A GO:0005254 ... N/A 27821745
    464 5t5n:B (3.1) BS01 CL N/A GO:0005254 ... N/A 27821745
    465 5t5n:B (3.1) BS03 CL N/A GO:0005254 ... N/A 27821745
    466 5t5n:B (3.1) BS04 CL N/A GO:0005254 ... N/A 27821745
    467 5t5n:C (3.1) BS01 CL N/A GO:0005254 ... N/A 27821745
    468 5t5n:C (3.1) BS03 CL N/A GO:0005254 ... N/A 27821745
    469 5t5n:C (3.1) BS04 CL N/A GO:0005254 ... N/A 27821745
    470 5t5n:D (3.1) BS01 CL N/A GO:0005254 ... N/A 27821745
    471 5t5n:D (3.1) BS03 CL N/A GO:0005254 ... N/A 27821745
    472 5t5n:D (3.1) BS04 CL N/A GO:0005254 ... N/A 27821745
    473 5t5n:E (3.1) BS02 CL N/A GO:0005254 ... N/A 27821745
    474 5t5n:E (3.1) BS03 CL N/A GO:0005254 ... N/A 27821745
    475 5t88:A (1.902) BS01 CL 3.4.21.26 GO:0004252 ... Q51714 30786206
    476 5t88:A (1.902) BS02 CL 3.4.21.26 GO:0004252 ... Q51714 30786206
    477 5t88:B (1.902) BS01 CL 3.4.21.26 GO:0004252 ... Q51714 30786206
    478 5t88:B (1.902) BS02 CL 3.4.21.26 GO:0004252 ... Q51714 30786206
    479 5ztk:A (1.75) BS01 CL ? GO:0007602 ... W8VZW3 30455349
    480 5ztl:A (1.85) BS01 CL ? GO:0007602 ... W8VZW3 30455349
    481 6a4n:A (1.75) BS04 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    482 6a4n:A (1.75) BS05 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    483 6a4n:A (1.75) BS06 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    484 6a4o:A (1.75) BS04 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    485 6a4o:A (1.75) BS05 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    486 6a4p:A (1.76) BS04 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    487 6a4q:A (1.75) BS04 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    488 6a4q:A (1.75) BS05 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    489 6a4q:A (1.75) BS06 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    490 6can:A (2.2) BS01 CL 3.4.21.26 GO:0004252 ... Q51714 30786206
    491 6can:A (2.2) BS02 CL 3.4.21.26 GO:0004252 ... Q51714 30786206
    492 6can:B (2.2) BS01 CL 3.4.21.26 GO:0004252 ... Q51714 30786206
    493 6can:B (2.2) BS02 CL 3.4.21.26 GO:0004252 ... Q51714 30786206
    494 6cmc:A (3.671) BS01 CL ? GO:0005272 ... Q1XA76 30157194
    495 6coy:A (3.36) BS01 CL ? GO:0005247 ... P35523 29809153
    496 6coy:B (3.36) BS01 CL ? GO:0005247 ... P35523 29809153
    497 6dcj:A (1.35) BS01 CL ? N/A P45299 31045566
    498 6dcj:B (1.35) BS01 CL ? N/A P45299 31045566
    499 6f1p:A (1.12) BS02 CL 3.2.1.17 GO:0003796 ... P00698 29717719
    500 6f1p:A (1.12) BS03 CL 3.2.1.17 GO:0003796 ... P00698 29717719
    501 6f1r:A (1.1) BS01 CL 3.2.1.17 GO:0003796 ... P00698 29717719
    502 6f1r:A (1.1) BS02 CL 3.2.1.17 GO:0003796 ... P00698 29717719
    503 6f9x:A (1.25) BS01 CL 3.2.1.17 GO:0003796 ... P00698 29717719
    504 6hzg:A (1.6) BS04 CL ? GO:0005975 ... A0A4V8GZY5 30877196
    505 6jkz:A (1.397) BS01 CL N/A GO:0006629 ... N/A 31073025
    506 6jy6:A (1.8) BS02 CL ? GO:0007602 ... W8VZW3 32083178
    507 6jy7:A (1.8) BS02 CL ? GO:0007602 ... W8VZW3 32083178
    508 6jy8:A (1.9) BS02 CL ? GO:0007602 ... W8VZW3 32083178
    509 6jy9:A (1.9) BS02 CL ? GO:0007602 ... W8VZW3 32083178
    510 6jya:A (1.803) BS02 CL ? GO:0007602 ... W8VZW3 32083178
    511 6jyb:A (1.802) BS02 CL ? GO:0007602 ... W8VZW3 32083178
    512 6jyc:A (1.892) BS02 CL ? GO:0007602 ... W8VZW3 32083178
    513 6jyd:A (2.007) BS02 CL ? GO:0007602 ... W8VZW3 32083178
    514 6jye:A (1.9) BS02 CL ? GO:0007602 ... W8VZW3 32083178
    515 6jyf:A (2.004) BS02 CL ? GO:0007602 ... W8VZW3 32083178
    516 6kkr:A (2.9) BS03 CL ? GO:0005515 ... Q9UP95 31649201
    517 6kkr:B (2.9) BS04 CL ? GO:0005515 ... Q9UP95 31649201
    518 6kkt:A (2.9) BS03 CL ? GO:0005515 ... Q9UP95 31649201
    519 6kkt:B (2.9) BS04 CL ? GO:0005515 ... Q9UP95 31649201
    520 6kku:A (3.5) BS02 CL ? GO:0005515 ... Q9UP95 31649201
    521 6kku:B (3.5) BS03 CL ? GO:0005515 ... Q9UP95 31649201
    522 6lsc:A (3.21) BS01 CL ? GO:0005247 ... P37019 N/A
    523 6lzm:A (1.8) BS01 CL 3.2.1.17 GO:0003796 ... P00720 2062826
    524 6m1y:A (3.2) BS01 CL ? GO:0001525 ... Q9UHW9 33199848
    525 6m1y:A (3.2) BS02 CL ? GO:0001525 ... Q9UHW9 33199848
    526 6m1y:B (3.2) BS01 CL ? GO:0001525 ... Q9UHW9 33199848
    527 6m1y:B (3.2) BS02 CL ? GO:0001525 ... Q9UHW9 33199848
    528 6m22:A (2.7) BS01 CL ? GO:0001525 ... Q9UHW9 33199848
    529 6m22:A (2.7) BS02 CL ? GO:0001525 ... Q9UHW9 33199848
    530 6m22:B (2.7) BS01 CL ? GO:0001525 ... Q9UHW9 33199848
    531 6m22:B (2.7) BS02 CL ? GO:0001525 ... Q9UHW9 33199848
    532 6m23:A (3.2) BS01 CL ? GO:0005886 ... Q9H2X9 33199848
    533 6m23:B (3.2) BS01 CL ? GO:0005886 ... Q9H2X9 33199848
    534 6mpq:A (1.95) BS02 CL ? GO:0008658 ... Q8RLA6 30862744
    535 6mpx:A (1.9) BS01 CL ? GO:0005201 ... P02462
    P08572    		 30923125
    536 6mpx:A (1.9) BS02 CL ? GO:0005201 ... P02462
    P08572    		 30923125
    537 6mpx:A (1.9) BS03 CL ? GO:0005201 ... P02462
    P08572    		 30923125
    538 6mpx:A (1.9) BS04 CL ? GO:0005201 ... P02462
    P08572    		 30923125
    539 6mpx:A (1.9) BS05 CL ? GO:0005201 ... P02462
    P08572    		 30923125
    540 6nph:A (2.9) BS02 CL ? GO:0006811 ... A0A0G2KTI4 31367042
    541 6nph:B (2.9) BS02 CL ? GO:0006811 ... A0A0G2KTI4 31367042
    542 6npl:A (2.9) BS02 CL ? GO:0006811 ... A0A0G2KTI4 31367042
    543 6npl:B (2.9) BS02 CL ? GO:0006811 ... A0A0G2KTI4 31367042
    544 6ora:A (2.2) BS03 CL 2.5.1.72 GO:0005737 ... O57767 31390192
    545 6ora:B (2.2) BS03 CL 2.5.1.72 GO:0005737 ... O57767 31390192
    546 6qp4:A (2.5) BS01 CL ? GO:0019867 ... Q9XD56 31400508
    547 6rhr:A (1.06) BS05 CL 1.10.3.2 GO:0005507 ... I1VE66 31478903
    548 6rhu:A (0.96) BS05 CL 1.10.3.2 GO:0005507 ... I1VE66 31478903
    549 6rhx:A (0.96) BS05 CL 1.10.3.2 GO:0005507 ... I1VE66 31478903
    550 6ri0:A (1.0) BS05 CL 1.10.3.2 GO:0005507 ... I1VE66 31478903
    551 6ri2:A (1.09) BS05 CL 1.10.3.2 GO:0005507 ... I1VE66 31478903
    552 6rjn:A (2.295) BS03 CL 1.11.1.6 GO:0000166 ... C1PHG1 31238127
    553 6rjn:B (2.295) BS03 CL 1.11.1.6 GO:0000166 ... C1PHG1 31238127
    554 6ukn:A (3.65) BS02 CL ? GO:0005886 ... Q9WVL3 32286222
    555 6wku:A (1.76) BS01 CL ? GO:0005201 ... P29400
    P53420
    Q01955    		 33775698
    556 6wku:A (1.76) BS02 CL ? GO:0005201 ... P29400
    P53420
    Q01955    		 33775698
    557 6wku:A (1.76) BS03 CL ? GO:0005201 ... P29400
    P53420
    Q01955    		 33775698
    558 6wy0:B (2.799) BS04 CL 1.11.2.2 GO:0004601 ... P05164 33007547
    559 6wy0:D (2.799) BS02 CL 1.11.2.2 GO:0004601 ... P05164 33007547
    560 6wy0:E (2.799) BS05 CL 1.11.2.2 GO:0004601 ... P05164 33007547
    561 6wyd:E (2.55) BS06 CL 1.11.2.2 GO:0004601 ... P05164 33007547
    562 6wyd:G (2.55) BS01 CL 1.11.2.2 GO:0004601 ... P05164 33007547
    563 6wyd:I (2.55) BS02 CL 1.11.2.2 GO:0004601 ... P05164 33007547
    564 6xb9:A (2.25) BS03 CL ? GO:0005506 ... C1DN94 33662397
    565 6xb9:B (2.25) BS04 CL ? GO:0005506 ... C1DN94 33662397
    566 6xb9:C (2.25) BS03 CL ? GO:0005506 ... C1DN94 33662397
    567 6xb9:D (2.25) BS04 CL ? GO:0005506 ... C1DN94 33662397
    568 6xb9:E (2.25) BS03 CL ? GO:0005506 ... C1DN94 33662397
    569 6xb9:F (2.25) BS03 CL ? GO:0005506 ... C1DN94 33662397
    570 6xb9:G (2.25) BS03 CL ? GO:0005506 ... C1DN94 33662397
    571 6xb9:H (2.25) BS03 CL ? GO:0005506 ... C1DN94 33662397
    572 6xb9:H (2.25) BS04 CL ? GO:0005506 ... C1DN94 33662397
    573 6xb9:I (2.25) BS03 CL ? GO:0005506 ... C1DN94 33662397
    574 6xb9:J (2.25) BS03 CL ? GO:0005506 ... C1DN94 33662397
    575 6xb9:K (2.25) BS03 CL ? GO:0005506 ... C1DN94 33662397
    576 6xb9:L (2.25) BS03 CL ? GO:0005506 ... C1DN94 33662397
    577 6xl3:A (2.33) BS02 CL N/A GO:0016020 ... N/A 32703899
    578 6xl3:B (2.33) BS02 CL N/A GO:0016020 ... N/A 32703899
    579 6y01:AAA (1.23) BS01 CL ? N/A B7K4Z0 32880594
    580 6y01:AAA (1.23) BS02 CL ? N/A B7K4Z0 32880594
    581 6y01:AAA (1.23) BS03 CL ? N/A B7K4Z0 32880594
    582 6y01:BBB (1.23) BS01 CL ? N/A B7K4Z0 32880594
    583 6y01:BBB (1.23) BS02 CL ? N/A B7K4Z0 32880594
    584 6y01:BBB (1.23) BS03 CL ? N/A B7K4Z0 32880594
    585 6y01:CCC (1.23) BS01 CL ? N/A B7K4Z0 32880594
    586 6y01:CCC (1.23) BS02 CL ? N/A B7K4Z0 32880594
    587 6y01:CCC (1.23) BS03 CL ? N/A B7K4Z0 32880594
    588 6y01:DDD (1.23) BS01 CL ? N/A B7K4Z0 32880594
    589 6zpl:A (3.945) BS03 CL ? GO:0016020 ... P48067 33658720
    590 6zpl:B (3.945) BS03 CL ? GO:0016020 ... P48067 33658720
    591 7bmo:A (1.9) BS01 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    592 7bmo:A (1.9) BS02 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    593 7bmo:A (1.9) BS03 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    594 7bmo:A (1.9) BS04 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    595 7bmp:A (1.9) BS01 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    596 7bmp:A (1.9) BS02 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    597 7bmp:A (1.9) BS03 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    598 7bmp:A (1.9) BS04 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    599 7bms:A (1.75) BS01 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    600 7bms:A (1.75) BS02 CL 3.2.1.17 GO:0003796 ... P00698 34426585
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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