Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 738 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 3a7k:D (2.0) BS04 CL N/A GO:0005216 ... N/A 19961859
    202 3baw:A (2.0) BS02 CL 3.2.1.1 GO:0003824 ... P04746 18284212
    203 3bax:A (1.9) BS02 CL 3.2.1.1 GO:0003824 ... P04746 18284212
    204 3brb:B (1.9) BS01 CL 2.7.10.1 GO:0004672 ... Q12866 19028587
    205 3brb:B (1.9) BS02 CL 2.7.10.1 GO:0004672 ... Q12866 19028587
    206 3brb:B (1.9) BS03 CL 2.7.10.1 GO:0004672 ... Q12866 19028587
    207 3hx9:A (1.75) BS02 CL 1.14.99.57 GO:0004392 ... P9WKH3 19917297
    208 3i6y:A (1.75) BS01 CL 3.1.2.12 GO:0005829 ... D0VWZ4 22519667
    209 3i6y:B (1.75) BS01 CL 3.1.2.12 GO:0005829 ... D0VWZ4 22519667
    210 3lf1:A (2.315) BS01 CL ? GO:0000166 ... Q9HYA2 20340135
    211 3lf1:B (2.315) BS01 CL ? GO:0000166 ... Q9HYA2 20340135
    212 3lf2:D (2.3) BS01 CL ? GO:0000166 ... Q9HYA2 20340135
    213 3mhx:B (1.7) BS01 CL ? GO:0046872 ... B2FQ63 20516589
    214 3n5w:A (1.73) BS04 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    215 3n5w:B (1.73) BS06 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    216 3n5x:A (1.8) BS04 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    217 3n5x:B (1.8) BS06 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    218 3n60:A (1.98) BS04 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    219 3n60:B (1.98) BS04 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    220 3n61:A (1.95) BS05 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    221 3n62:A (1.95) BS04 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    222 3n63:A (2.0) BS04 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    223 3n63:B (2.0) BS04 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    224 3n64:A (1.95) BS04 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    225 3n64:B (1.95) BS02 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    226 3n65:A (1.8) BS04 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    227 3n65:B (1.8) BS09 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    228 3n66:A (1.78) BS04 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    229 3n66:B (1.78) BS04 CL 1.14.13.39 GO:0004517 ... P29476 21138269
    230 3nnf:A (2.201) BS03 CL ? N/A Q6DNF2 20660778
    231 3nnl:A (2.883) BS03 CL ? N/A Q6DNF2 20660778
    232 3omi:C (2.15) BS08 CL 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    233 3omn:C (2.15) BS07 CL 7.1.1.9 GO:0004129 ... Q3J5A7 21205904
    234 3org:A (3.5) BS01 CL N/A GO:0005247 ... N/A 20929736
    235 3org:A (3.5) BS02 CL N/A GO:0005247 ... N/A 20929736
    236 3org:B (3.5) BS01 CL N/A GO:0005247 ... N/A 20929736
    237 3org:B (3.5) BS02 CL N/A GO:0005247 ... N/A 20929736
    238 3org:C (3.5) BS01 CL N/A GO:0005247 ... N/A 20929736
    239 3org:D (3.5) BS01 CL N/A GO:0005247 ... N/A 20929736
    240 3org:D (3.5) BS02 CL N/A GO:0005247 ... N/A 20929736
    241 3pmo:A (1.3) BS01 CL 2.3.1.191 GO:0009245 ... Q9HXY6 21795786
    242 3q02:A (2.3) BS01 CL ? GO:0001525 ... P05121 21697084
    243 3q03:A (2.6401) BS01 CL ? GO:0001525 ... P05121 21697084
    244 3q03:B (2.6401) BS02 CL ? GO:0001525 ... P05121 21697084
    245 3qse:A (1.75) BS02 CL 1.5.3.1 GO:0005737 ... P40859 21568312
    246 3qse:B (1.75) BS01 CL 1.5.3.1 GO:0005737 ... P40859 21568312
    247 3qsm:A (1.9) BS02 CL 1.5.3.1 GO:0005737 ... P40859 21568312
    248 3qsm:A (1.9) BS03 CL 1.5.3.1 GO:0005737 ... P40859 21568312
    249 3qsm:B (1.9) BS02 CL 1.5.3.1 GO:0005737 ... P40859 21568312
    250 3qsm:B (1.9) BS03 CL 1.5.3.1 GO:0005737 ... P40859 21568312
    251 3qss:A (1.85) BS02 CL 1.5.3.1 GO:0005737 ... P40859 21568312
    252 3qss:A (1.85) BS03 CL 1.5.3.1 GO:0005737 ... P40859 21568312
    253 3qss:B (1.85) BS02 CL 1.5.3.1 GO:0005737 ... P40859 21568312
    254 3qss:B (1.85) BS03 CL 1.5.3.1 GO:0005737 ... P40859 21568312
    255 3rk4:A (1.31) BS01 CL 3.8.1.5 GO:0003824 ... P0A3G2 24531456
    256 3s18:A (2.2) BS02 CL ? GO:0046872 ... G1K3S0 25559942
    257 3s18:A (2.2) BS03 CL ? GO:0046872 ... G1K3S0 25559942
    258 3v6n:A (2.2) BS02 CL ? GO:0046872 ... G1K3R9 25559942
    259 3v6n:B (2.2) BS02 CL ? GO:0046872 ... G1K3R9 25559942
    260 3zs1:D (2.6) BS04 CL 1.11.2.2 GO:0004601 ... P05164 21880720
    261 4bjy:A (1.52) BS03 CL 1.14.13.1 GO:0000166 ... Q0SFK6 23864660
    262 4bjz:A (1.51) BS03 CL 1.14.13.1 GO:0000166 ... Q0SFK6 23864660
    263 4bjz:A (1.51) BS04 CL 1.14.13.1 GO:0000166 ... Q0SFK6 23864660
    264 4bk1:A (1.73) BS04 CL 1.14.13.1 GO:0000166 ... Q0SFK6 23864660
    265 4bk3:A (1.78) BS03 CL 1.14.13.1 GO:0000166 ... Q0SFK6 23864660
    266 4bk3:A (1.78) BS04 CL 1.14.13.1 GO:0000166 ... Q0SFK6 23864660
    267 4c2n:A (2.59) BS02 CL 3.4.15.1 GO:0006508 ... P12821 24297181
    268 4c2o:A (1.8) BS02 CL 3.4.15.1 GO:0006508 ... P12821 24297181
    269 4c2o:A (1.8) BS03 CL 3.4.15.1 GO:0006508 ... P12821 24297181
    270 4c2p:A (1.99) BS03 CL 3.4.15.1 GO:0006508 ... P12821 24297181
    271 4c2p:A (1.99) BS04 CL 3.4.15.1 GO:0006508 ... P12821 24297181
    272 4c2q:A (2.4) BS03 CL 3.4.15.1 GO:0006508 ... P12821 24297181
    273 4c2r:A (2.3) BS02 CL 3.4.15.1 GO:0006508 ... P12821 24297181
    274 4crq:A (1.5) BS02 CL 3.2.1.39 GO:0004553 ... G0L2L9 25664729
    275 4crq:B (1.5) BS03 CL 3.2.1.39 GO:0004553 ... G0L2L9 25664729
    276 4cte:A (1.8) BS04 CL 3.2.1.39 GO:0004553 ... G0L2L9 25664729
    277 4cte:B (1.8) BS05 CL 3.2.1.39 GO:0004553 ... G0L2L9 25664729
    278 4dnj:A (1.8) BS03 CL 1.14.99.15 GO:0004497 ... Q6N8N2 22695988
    279 4dnz:B (2.6) BS02 CL ? GO:0004497 ... Q2IU02 22695988
    280 4dnz:C (2.6) BS02 CL ? GO:0004497 ... Q2IU02 22695988
    281 4dnz:D (2.6) BS02 CL ? GO:0004497 ... Q2IU02 22695988
    282 4do1:A (2.0) BS03 CL ? GO:0004497 ... Q2IU02 22695988
    283 4do1:B (2.0) BS03 CL ? GO:0004497 ... Q2IU02 22695988
    284 4do1:C (2.0) BS03 CL ? GO:0004497 ... Q2IU02 22695988
    285 4do1:D (2.0) BS03 CL ? GO:0004497 ... Q2IU02 22695988
    286 4dur:A (2.45) BS01 CL 3.4.21.7 GO:0002020 ... P00747 22832192
    287 4dur:A (2.45) BS02 CL 3.4.21.7 GO:0002020 ... P00747 22832192
    288 4dur:A (2.45) BS03 CL 3.4.21.7 GO:0002020 ... P00747 22832192
    289 4dur:B (2.45) BS01 CL 3.4.21.7 GO:0002020 ... P00747 22832192
    290 4dur:B (2.45) BS02 CL 3.4.21.7 GO:0002020 ... P00747 22832192
    291 4e3u:A (1.5) BS02 CL 3.2.1.17 GO:0003796 ... P00698 22868767
    292 4e3u:A (1.5) BS03 CL 3.2.1.17 GO:0003796 ... P00698 22868767
    293 4elx:A (2.191) BS01 CL 4.1.3.36 GO:0003824 ... P0ABU0 22606952
    294 4elx:B (2.191) BS01 CL 4.1.3.36 GO:0003824 ... P0ABU0 22606952
    295 4elx:C (2.191) BS01 CL 4.1.3.36 GO:0003824 ... P0ABU0 22606952
    296 4elx:D (2.191) BS01 CL 4.1.3.36 GO:0003824 ... P0ABU0 22606952
    297 4elx:F (2.191) BS01 CL 4.1.3.36 GO:0003824 ... P0ABU0 22606952
    298 4eml:A (2.043) BS02 CL 4.1.3.36 GO:0003824 ... P73495 22606952
    299 4ene:A (2.4) BS01 CL ? GO:0005247 ... P37019 23239938
    300 4ene:A (2.4) BS04 CL ? GO:0005247 ... P37019 23239938
    301 4ene:B (2.4) BS05 CL ? GO:0005247 ... P37019 23239938
    302 4ene:B (2.4) BS06 CL ? GO:0005247 ... P37019 23239938
    303 4fwb:A (1.26) BS02 CL 3.8.1.5 GO:0003824 ... P0A3G2 24531456
    304 4fwb:A (1.26) BS03 CL 3.8.1.5 GO:0003824 ... P0A3G2 24531456
    305 4fwb:A (1.26) BS04 CL 3.8.1.5 GO:0003824 ... P0A3G2 24531456
    306 4gdm:B (2.75) BS02 CL 4.2.99.20 GO:0005829 ... P37355 23637813
    307 4gdm:C (2.75) BS02 CL 4.2.99.20 GO:0005829 ... P37355 23637813
    308 4gdx:B (1.67) BS02 CL 2.3.2.2
    3.4.19.13
    3.4.19.14    		 GO:0006751 ... P19440 24047895
    309 4gec:A (2.5) BS02 CL 4.2.99.20 GO:0005829 ... P37355 23637813
    310 4gec:C (2.5) BS02 CL 4.2.99.20 GO:0005829 ... P37355 23637813
    311 4gg2:B (2.21) BS02 CL 2.3.2.2
    3.4.19.13
    3.4.19.14    		 GO:0006751 ... P19440 24047895
    312 4gyl:A (1.9) BS02 CL 3.5.1.4 GO:0003837 ... Q9L543 23946488
    313 4gyn:A (1.9) BS01 CL 3.5.1.4 GO:0003837 ... Q9L543 23946488
    314 4h1p:A (2.3) BS02 CL 3.2.1.17 GO:0003796 ... P00698 23295480
    315 4h1p:A (2.3) BS03 CL 3.2.1.17 GO:0003796 ... P00698 23295480
    316 4h1p:A (2.3) BS04 CL 3.2.1.17 GO:0003796 ... P00698 23295480
    317 4hhr:A (1.51) BS05 CL 1.13.11.92 GO:0001561 ... Q9SGH6 23373518
    318 4hhr:A (1.51) BS06 CL 1.13.11.92 GO:0001561 ... Q9SGH6 23373518
    319 4hhs:A (1.7) BS05 CL 1.13.11.92 GO:0001561 ... Q9SGH6 23373518
    320 4hhs:A (1.7) BS06 CL 1.13.11.92 GO:0001561 ... Q9SGH6 23373518
    321 4hse:A (2.2) BS02 CL ? GO:0005524 ... Q9RA63 23341453
    322 4hzg:A (1.95) BS01 CL 3.8.1.5 GO:0003824 ... P0A3G3 24531456
    323 4io2:A (1.37) BS01 CL ? GO:0015276 ... E9P5T5 23434404
    324 4io2:B (1.37) BS01 CL ? GO:0015276 ... E9P5T5 23434404
    325 4io3:A (1.66) BS02 CL ? GO:0015276 ... E9P5T5 23434404
    326 4io3:B (1.66) BS02 CL ? GO:0015276 ... E9P5T5 23434404
    327 4io4:A (1.941) BS02 CL ? GO:0015276 ... E9P5T5 23434404
    328 4io4:A (1.941) BS03 CL ? GO:0015276 ... E9P5T5 23434404
    329 4io4:A (1.941) BS04 CL ? GO:0015276 ... E9P5T5 23434404
    330 4io4:B (1.941) BS02 CL ? GO:0015276 ... E9P5T5 23434404
    331 4io4:B (1.941) BS03 CL ? GO:0015276 ... E9P5T5 23434404
    332 4io5:A (1.721) BS02 CL ? GO:0015276 ... E9P5T5 23434404
    333 4io5:A (1.721) BS03 CL ? GO:0015276 ... E9P5T5 23434404
    334 4io5:A (1.721) BS04 CL ? GO:0015276 ... E9P5T5 23434404
    335 4io5:B (1.721) BS02 CL ? GO:0015276 ... E9P5T5 23434404
    336 4io5:B (1.721) BS03 CL ? GO:0015276 ... E9P5T5 23434404
    337 4io6:A (1.6) BS02 CL ? GO:0015276 ... E9P5T5 23434404
    338 4io6:A (1.6) BS03 CL ? GO:0015276 ... E9P5T5 23434404
    339 4io6:A (1.6) BS04 CL ? GO:0015276 ... E9P5T5 23434404
    340 4io6:B (1.6) BS02 CL ? GO:0015276 ... E9P5T5 23434404
    341 4io6:B (1.6) BS03 CL ? GO:0015276 ... E9P5T5 23434404
    342 4io7:A (1.92) BS02 CL ? GO:0015276 ... E9P5T5 23434404
    343 4io7:B (1.92) BS02 CL ? GO:0015276 ... E9P5T5 23434404
    344 4itn:A (2.1912) BS01 CL 2.7.1.130 GO:0005524 ... O67572 23464738
    345 4ixt:B (2.49) BS01 CL 4.5.1.- N/A Q93D82 23585096
    346 4ixw:A (2.47) BS01 CL 4.5.1.- N/A Q93D82 23585096
    347 4ixw:B (2.47) BS01 CL 4.5.1.- N/A Q93D82 23585096
    348 4iy1:A (2.1) BS01 CL 4.5.1.- N/A Q93D82 23585096
    349 4iy1:B (2.1) BS01 CL 4.5.1.- N/A Q93D82 23585096
    350 4k2a:A (2.2) BS01 CL 3.8.1.5 GO:0003824 ... E2RV62 25004965
    351 4k2a:B (2.2) BS01 CL 3.8.1.5 GO:0003824 ... E2RV62 25004965
    352 4k2a:C (2.2) BS01 CL 3.8.1.5 GO:0003824 ... E2RV62 25004965
    353 4k2a:D (2.2) BS01 CL 3.8.1.5 GO:0003824 ... E2RV62 25004965
    354 4kzf:A (1.85) BS01 CL 3.5.1.4 GO:0003837 ... Q9L543 23946488
    355 4lzm:A (1.7) BS01 CL 3.2.1.17 GO:0003796 ... P00720 2062826
    356 4mbb:A (1.849) BS01 CL 3.1.3.- GO:0006470 ... O75319 24447265
    357 4mm4:B (2.886) BS04 CL ? GO:0005886 ... O67854 24121440
    358 4ng8:A (1.09) BS01 CL 3.2.1.17 GO:0003796 ... P00698 25084340
    359 4ngj:A (1.1) BS01 CL 3.2.1.17 GO:0003796 ... P00698 25084340
    360 4ngw:A (1.37) BS01 CL 3.2.1.17 GO:0003796 ... P00698 25084340
    361 4ngy:A (1.35) BS01 CL 3.2.1.17 GO:0003796 ... P00698 25084340
    362 4ngz:A (1.7) BS01 CL 3.2.1.17 GO:0003796 ... P00698 25084340
    363 4nyh:A (1.2) BS02 CL 3.1.3.- GO:0006470 ... O75319 24447265
    364 4nyh:B (1.2) BS02 CL 3.1.3.- GO:0006470 ... O75319 24447265
    365 4nyh:C (1.2) BS02 CL 3.1.3.- GO:0006470 ... O75319 24447265
    366 4pix:A (1.35) BS02 CL 1.13.11.20 GO:0005506 ... P21816 27477048
    367 4rdq:A (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    368 4rdq:A (2.85) BS02 CL N/A GO:0005254 ... N/A 25337878
    369 4rdq:A (2.85) BS05 CL N/A GO:0005254 ... N/A 25337878
    370 4rdq:B (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    371 4rdq:B (2.85) BS03 CL N/A GO:0005254 ... N/A 25337878
    372 4rdq:B (2.85) BS04 CL N/A GO:0005254 ... N/A 25337878
    373 4rdq:C (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    374 4rdq:C (2.85) BS03 CL N/A GO:0005254 ... N/A 25337878
    375 4rdq:C (2.85) BS04 CL N/A GO:0005254 ... N/A 25337878
    376 4rdq:D (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    377 4rdq:D (2.85) BS03 CL N/A GO:0005254 ... N/A 25337878
    378 4rdq:D (2.85) BS04 CL N/A GO:0005254 ... N/A 25337878
    379 4rdq:E (2.85) BS01 CL N/A GO:0005254 ... N/A 25337878
    380 4rdq:E (2.85) BS03 CL N/A GO:0005254 ... N/A 25337878
    381 4rdq:E (2.85) BS04 CL N/A GO:0005254 ... N/A 25337878
    382 4xf0:A (1.3994) BS03 CL 1.13.11.20 GO:0005506 ... P21816 27477048
    383 4xfb:A (1.35) BS02 CL 1.13.11.20 GO:0005506 ... P21816 27477048
    384 4xfg:A (1.401) BS03 CL 1.13.11.20 GO:0005506 ... P21816 27477048
    385 4xp1:A (2.89) BS04 CL ? GO:0016020 ... Q7K4Y6 25970245
    386 4xp4:A (2.8) BS05 CL ? GO:0016020 ... Q7K4Y6 25970245
    387 4xp5:A (3.3) BS07 CL ? GO:0016020 ... Q7K4Y6 25970245
    388 4xp6:A (3.1) BS05 CL ? GO:0016020 ... Q7K4Y6 25970245
    389 4xp9:C (2.8) BS05 CL ? GO:0016020 ... Q7K4Y6 25970245
    390 4xpa:A (2.95) BS05 CL ? GO:0016020 ... Q7K4Y6 25970245
    391 4xpb:A (3.05) BS07 CL ? GO:0016020 ... Q7K4Y6 25970245
    392 4xpf:A (3.273) BS06 CL ? GO:0016020 ... Q7K4Y6 25970245
    393 4xpg:A (3.21) BS03 CL ? GO:0016020 ... Q7K4Y6 25970245
    394 4xph:A (2.9) BS05 CL ? GO:0016020 ... Q7K4Y6 25970245
    395 4xpt:A (3.36) BS06 CL ? GO:0016020 ... Q7K4Y6 25970245
    396 5ahy:A (2.15) BS02 CL ? GO:0005216 ... B0R2U4 25916754
    397 5auv:A (1.5) BS02 CL 2.7.11.1 GO:0004672 ... P53355 26322379
    398 5aux:A (1.5) BS02 CL 2.7.11.1 GO:0004672 ... P53355 26322379
    399 5b2n:A (1.581) BS02 CL ? GO:0007602 ... W8VZW3 27365396
    400 5bse:A (1.7) BS01 CL 1.5.1.2 GO:0000166 ... G7KRM5 26579138
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218