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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 738 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aqh:A (2.0) BS02 CL 3.2.1.1 GO:0003824 ... P29957 9541387
    2 1aqm:A (1.85) BS02 CL 3.2.1.1 GO:0003824 ... P29957 9541387
    3 1b4t:A (1.8) BS03 CL 1.15.1.1 GO:0004784 ... P00445 10026301
    4 1b6g:A (1.15) BS02 CL 3.8.1.5 GO:0003824 ... P22643 10393294
    5 1cb6:A (2.0) BS01 CL 3.4.21.- GO:0001503 ... P02788 10089508
    6 1cb6:A (2.0) BS02 CL 3.4.21.- GO:0001503 ... P02788 10089508
    7 1cws:A (2.0) BS02 CL 3.1.3.48 GO:0004725 ... P30305 10543950
    8 1cwt:A (2.3) BS03 CL 3.1.3.48 GO:0004725 ... P30305 10543950
    9 1cxp:D (1.8) BS03 CL 1.11.2.2 GO:0004601 ... P05164 10766826
    10 1d3a:A (2.94) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 10653643
    11 1d3a:B (2.94) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 10653643
    12 1dp4:A (2.0) BS01 CL 4.6.1.2 GO:0016020 ... P18910 10894551
    13 1dp4:C (2.0) BS01 CL 4.6.1.2 GO:0016020 ... P18910 10894551
    14 1dpw:A (1.64) BS01 CL 3.2.1.17 GO:0003796 ... P00698 10944331
    15 1dpx:A (1.65) BS01 CL 3.2.1.17 GO:0003796 ... P00698 10944331
    16 1dvm:A (2.4) BS01 CL ? GO:0001525 ... P05121 10913251
    17 1dvm:C (2.4) BS01 CL ? GO:0001525 ... P05121 10913251
    18 1dvm:D (2.4) BS01 CL ? GO:0001525 ... P05121 10913251
    19 1e12:A (1.8) BS01 CL ? GO:0005216 ... P0DMH7 10827943
    20 1ean:A (1.7) BS01 CL ? GO:0003677 ... Q03347 12217689
    21 1eaq:A (1.25) BS01 CL ? GO:0003677 ... Q03347 12217689
    22 1eaq:B (1.25) BS01 CL ? GO:0003677 ... Q03347 12217689
    23 1edb:A (2.01) BS01 CL 3.8.1.5 GO:0003824 ... P22643 8369276
    24 1edd:A (2.19) BS01 CL 3.8.1.5 GO:0003824 ... P22643 8369276
    25 1h68:A (2.1) BS02 CL ? GO:0005216 ... P42196 11504917
    26 1h80:A (1.6) BS04 CL 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    27 1h80:B (1.6) BS04 CL 3.2.1.157 GO:0000272 ... Q9F5I8 11493601
    28 1h87:A (1.72) BS02 CL 3.2.1.17 GO:0003796 ... P00698 11752774
    29 1h87:A (1.72) BS03 CL 3.2.1.17 GO:0003796 ... P00698 11752774
    30 1hny:A (1.8) BS02 CL 3.2.1.1 GO:0003824 ... P04746 8528071
    31 1iee:A (0.94) BS02 CL 3.2.1.17 GO:0003796 ... P00698 11468395
    32 1iee:A (0.94) BS03 CL 3.2.1.17 GO:0003796 ... P00698 11468395
    33 1im8:A (2.2) BS01 CL 2.1.3.- GO:0002098 ... P43985 11746687
    34 1im8:B (2.2) BS01 CL 2.1.3.- GO:0002098 ... P43985 11746687
    35 1jae:A (1.65) BS02 CL 3.2.1.1 GO:0003824 ... P56634 9600843
    36 1jak:A (1.75) BS01 CL 3.2.1.52 GO:0004553 ... O85361 11522797
    37 1jd7:A (2.25) BS02 CL 3.2.1.1 GO:0003824 ... P29957 12021442
    38 1klz:A (1.5) BS01 CL 4.1.1.23 GO:0004590 ... O26232 11900543
    39 1kpl:A (3.0) BS01 CL ? GO:0005247 ... Q8ZRP8 11796999
    40 1kpl:B (3.0) BS01 CL ? GO:0005247 ... Q8ZRP8 11796999
    41 1kpl:C (3.0) BS01 CL ? GO:0005247 ... Q8ZRP8 11796999
    42 1kpl:D (3.0) BS01 CL ? GO:0005247 ... Q8ZRP8 11796999
    43 1lla:A (2.18) BS03 CL ? GO:0005344 ... P04253 8518732
    44 1npn:A (1.8) BS03 CL 1.7.2.1 GO:0005507 ... P38501 12680761
    45 1npn:B (1.8) BS03 CL 1.7.2.1 GO:0005507 ... P38501 12680761
    46 1npn:C (1.8) BS03 CL 1.7.2.1 GO:0005507 ... P38501 12680761
    47 1nw6:A (1.94) BS01 CL 2.1.1.72 GO:0003676 ... P14751 12732637
    48 1nw7:A (2.1) BS01 CL 2.1.1.72 GO:0003676 ... P14751 12732637
    49 1nw8:A (2.25) BS01 CL 2.1.1.72 GO:0003676 ... P14751 12732637
    50 1o6z:A (1.95) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    51 1o6z:A (1.95) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    52 1o6z:B (1.95) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    53 1o6z:B (1.95) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    54 1o6z:C (1.95) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    55 1o6z:C (1.95) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    56 1o6z:D (1.95) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    57 1o6z:D (1.95) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    58 1ogv:M (2.35) BS09 CL ? GO:0009772 ... P0C0Y9 12899837
    59 1ots:A (2.51) BS01 CL ? GO:0005247 ... P37019 12649487
    60 1ots:A (2.51) BS02 CL ? GO:0005247 ... P37019 12649487
    61 1ots:B (2.51) BS01 CL ? GO:0005247 ... P37019 12649487
    62 1ots:B (2.51) BS02 CL ? GO:0005247 ... P37019 12649487
    63 1ott:A (3.0) BS01 CL ? GO:0005247 ... P37019 12649487
    64 1ott:A (3.0) BS02 CL ? GO:0005247 ... P37019 12649487
    65 1ott:A (3.0) BS03 CL ? GO:0005247 ... P37019 12649487
    66 1ott:B (3.0) BS01 CL ? GO:0005247 ... P37019 12649487
    67 1ott:B (3.0) BS02 CL ? GO:0005247 ... P37019 12649487
    68 1ott:B (3.0) BS03 CL ? GO:0005247 ... P37019 12649487
    69 1otu:A (3.3) BS01 CL ? GO:0005247 ... P37019 12649487
    70 1otu:A (3.3) BS02 CL ? GO:0005247 ... P37019 12649487
    71 1otu:A (3.3) BS03 CL ? GO:0005247 ... P37019 12649487
    72 1otu:B (3.3) BS01 CL ? GO:0005247 ... P37019 12649487
    73 1otu:B (3.3) BS02 CL ? GO:0005247 ... P37019 12649487
    74 1pex:A (2.7) BS01 CL 3.4.24.- N/A P45452 8969305
    75 1pkr:A (2.48) BS01 CL 3.4.21.7 N/A P00747 8054447
    76 1ppi:A (2.2) BS05 CL 3.2.1.1 GO:0003824 ... P00690 8193143
    77 1pwz:A (2.5) BS01 CL ? N/A Q93D82 14517233
    78 1pwz:B (2.5) BS01 CL ? N/A Q93D82 14517233
    79 1qb0:A (1.91) BS02 CL 3.1.3.48 GO:0004725 ... P30305 10543950
    80 1smd:A (1.6) BS02 CL 3.2.1.1 GO:0003824 ... P0DUB6 15299664
    81 1ua3:A (2.01) BS08 CL 3.2.1.1 GO:0003824 ... P00690 12962327
    82 1uze:A (1.82) BS03 CL 3.4.15.1 GO:0006508 ... P12821 15236580
    83 1uze:A (1.82) BS04 CL 3.4.15.1 GO:0006508 ... P12821 15236580
    84 1uzf:A (2.0) BS03 CL 3.4.15.1 GO:0006508 ... P12821 15236580
    85 1uzf:A (2.0) BS04 CL 3.4.15.1 GO:0006508 ... P12821 15236580
    86 1vl9:A (0.97) BS03 CL 3.1.1.4 GO:0002227 ... P00593 16508077
    87 1vs0:A (2.4) BS02 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    88 1vs0:A (2.4) BS03 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    89 1vs0:B (2.4) BS02 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    90 1vs0:B (2.4) BS03 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    91 1wo2:A (2.01) BS08 CL 3.2.1.1 GO:0003824 ... P00690 15736930
    92 1xh1:A (2.03) BS02 CL 3.2.1.1 GO:0003824 ... P04746 15722449
    93 1xh2:A (2.2) BS03 CL 3.2.1.1 GO:0003824 ... P04746 15722449
    94 1yfk:A (2.7) BS01 CL 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P18669 15883004
    95 1yjx:B (2.8) BS01 CL 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P18669 15883004
    96 1yjx:C (2.8) BS01 CL 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P18669 15883004
    97 1yjx:D (2.8) BS01 CL 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P18669 15883004
    98 1yjx:E (2.8) BS01 CL 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P18669 15883004
    99 1yjx:G (2.8) BS01 CL 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P18669 15883004
    100 1yjx:I (2.8) BS01 CL 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P18669 15883004
    101 1yjx:J (2.8) BS01 CL 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P18669 15883004
    102 1yjx:K (2.8) BS01 CL 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P18669 15883004
    103 1yjx:L (2.8) BS01 CL 5.4.2.11
    5.4.2.4    		 GO:0003824 ... P18669 15883004
    104 1yqz:A (1.54) BS01 CL 1.8.1.14 GO:0003756 ... O52582 16981688
    105 1yqz:A (1.54) BS02 CL 1.8.1.14 GO:0003756 ... O52582 16981688
    106 1yqz:B (1.54) BS01 CL 1.8.1.14 GO:0003756 ... O52582 16981688
    107 1yqz:B (1.54) BS04 CL 1.8.1.14 GO:0003756 ... O52582 16981688
    108 2a8j:A (1.9) BS01 CL 3.4.25.- GO:0004298 ... Q9H6P5 16216576
    109 2a8j:B (1.9) BS01 CL 3.4.25.- GO:0004298 ... Q9H6P5 16216576
    110 2a8m:A (2.6) BS01 CL 3.4.25.- GO:0004298 ... Q9H6P5 16216576
    111 2bax:A (1.1) BS02 CL 3.1.1.4 GO:0002227 ... P00593 16508077
    112 2bmv:A (2.11) BS01 CL ? GO:0010181 ... O25776 17623845
    113 2d0d:A (1.65) BS01 CL 3.7.1.9 GO:0003824 ... P96965 16844437
    114 2d4k:A (1.15) BS02 CL 3.2.1.17 GO:0003796 ... P00698 16552138
    115 2d4k:N (1.15) BS02 CL 3.2.1.17 GO:0003796 ... P00698 16552138
    116 2d4k:N (1.15) BS03 CL 3.2.1.17 GO:0003796 ... P00698 16552138
    117 2dfn:A (1.93) BS01 CL 2.7.1.71 GO:0000287 ... P9WPY3 17183161
    118 2dft:A (2.8) BS01 CL 2.7.1.71 GO:0000287 ... P9WPY3 17183161
    119 2dft:B (2.8) BS01 CL 2.7.1.71 GO:0000287 ... P9WPY3 17183161
    120 2dft:D (2.8) BS01 CL 2.7.1.71 GO:0000287 ... P9WPY3 17183161
    121 2dhd:A (2.13) BS01 CL 3.8.1.5 GO:0003824 ... P22643 8515812
    122 2dhe:A (2.13) BS01 CL 3.8.1.5 GO:0003824 ... P22643 8515812
    123 2fct:A (1.6) BS02 CL 1.14.20.15 GO:0016491 ... Q9RBY6 16541079
    124 2fct:B (1.6) BS02 CL 1.14.20.15 GO:0016491 ... Q9RBY6 16541079
    125 2g4j:A (1.85) BS03 CL 5.3.1.5 GO:0000287 ... P24300 17327674
    126 2g4k:A (1.82) BS03 CL 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 17327674
    127 2g4p:A (1.84) BS01 CL 3.2.1.17 GO:0003796 ... P00698 17327674
    128 2g4p:A (1.84) BS02 CL 3.2.1.17 GO:0003796 ... P00698 17327674
    129 2g4p:A (1.84) BS03 CL 3.2.1.17 GO:0003796 ... P00698 17327674
    130 2g4q:A (1.84) BS01 CL 3.2.1.17 GO:0003796 ... P00698 17327674
    131 2g4r:A (1.92) BS01 CL ? GO:0006777 ... O53877 17327674
    132 2g4w:B (1.84) BS01 CL 4.6.1.18 GO:0003676 ... P61823 17327674
    133 2g4z:A (1.98) BS05 CL 3.4.24.27 GO:0004222 ... P00800 17327674
    134 2g4z:A (1.98) BS06 CL 3.4.24.27 GO:0004222 ... P00800 17327674
    135 2g7e:A (1.6) BS01 CL 3.1.21.- GO:0004518 ... Q2XSK9 17057343
    136 2g7f:A (1.95) BS01 CL 3.1.21.- GO:0004518 ... Q2XSK9 17057343
    137 2gez:B (2.6) BS01 CL 3.4.19.5 GO:0016787 ... Q9ZSD6 16725155
    138 2gez:D (2.6) BS01 CL 3.4.19.5 GO:0016787 ... Q9ZSD6 16725155
    139 2gez:F (2.6) BS01 CL 3.4.19.5 GO:0016787 ... Q9ZSD6 16725155
    140 2gez:H (2.6) BS01 CL 3.4.19.5 GO:0016787 ... Q9ZSD6 16725155
    141 2hlp:A (2.59) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 10653643
    142 2iul:A (2.01) BS02 CL 3.4.15.1 GO:0006508 ... P12821 17042482
    143 2iul:A (2.01) BS03 CL 3.4.15.1 GO:0006508 ... P12821 17042482
    144 2iuo:B (1.9) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    145 2iuo:C (1.9) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    146 2iuo:D (1.9) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    147 2iuo:G (1.9) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    148 2iuo:H (1.9) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    149 2iuo:I (1.9) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    150 2iux:A (2.8) BS02 CL 3.4.15.1 GO:0006508 ... P12821 17042482
    151 2iux:A (2.8) BS03 CL 3.4.15.1 GO:0006508 ... P12821 17042482
    152 2iv1:G (1.88) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    153 2iv1:I (1.88) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    154 2ivb:F (1.95) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    155 2ivb:G (1.95) BS02 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    156 2ivb:H (1.95) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    157 2ivb:I (1.95) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    158 2ivq:H (2.1) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    159 2ivq:J (2.1) BS01 CL 4.2.1.104 GO:0003677 ... P00816 N/A
    160 2jaf:A (1.7) BS01 CL ? GO:0005216 ... B0R2U4 17117890
    161 2jaf:A (1.7) BS02 CL ? GO:0005216 ... B0R2U4 17117890
    162 2jag:A (1.93) BS01 CL ? GO:0005216 ... B0R2U4 17117890
    163 2jag:A (1.93) BS02 CL ? GO:0005216 ... B0R2U4 17117890
    164 2nrb:A (2.0) BS01 CL 2.8.3.5 GO:0005739 ... Q29551 17718512
    165 2o24:A (1.45) BS01 CL ? GO:0003674 ... P42212 17434942
    166 2q6o:A (2.0) BS01 CL 2.5.1.94 GO:0016740 ... A4X3Q0 18059261
    167 2q6o:B (2.0) BS01 CL 2.5.1.94 GO:0016740 ... A4X3Q0 18059261
    168 2qts:A (1.9) BS02 CL ? GO:0005272 ... Q1XA76 17882215
    169 2qts:B (1.9) BS04 CL ? GO:0005272 ... Q1XA76 17882215
    170 2qts:C (1.9) BS03 CL ? GO:0005272 ... Q1XA76 17882215
    171 2qts:D (1.9) BS01 CL ? GO:0005272 ... Q1XA76 17882215
    172 2qts:E (1.9) BS01 CL ? GO:0005272 ... Q1XA76 17882215
    173 2qts:F (1.9) BS01 CL ? GO:0005272 ... Q1XA76 17882215
    174 2v7t:A (2.15) BS02 CL 2.5.1.63 GO:0016740 ... Q70GK9 17985882
    175 2v7t:B (2.15) BS02 CL 2.5.1.63 GO:0016740 ... Q70GK9 17985882
    176 2v7t:C (2.15) BS03 CL 2.5.1.63 GO:0016740 ... Q70GK9 17985882
    177 2v7u:A (2.0) BS02 CL 2.5.1.63 GO:0016740 ... Q70GK9 17985882
    178 2v7u:B (2.0) BS03 CL 2.5.1.63 GO:0016740 ... Q70GK9 17985882
    179 2v7u:C (2.0) BS03 CL 2.5.1.63 GO:0016740 ... Q70GK9 17985882
    180 2vec:A (1.85) BS01 CL ? GO:0005737 ... P42624 18561187
    181 2w3t:A (1.69) BS02 CL 3.5.1.88 GO:0005515 ... P0A6K3 20112455
    182 2wgv:A (1.8) BS01 CL 3.5.2.6 GO:0008658 ... P14489 21108605
    183 2wgv:B (1.8) BS01 CL 3.5.2.6 GO:0008658 ... P14489 21108605
    184 2wid:A (2.3) BS03 CL 3.1.1.8 GO:0001540 ... P06276 19368529
    185 2wif:A (2.25) BS04 CL 3.1.1.8 GO:0001540 ... P06276 19368529
    186 2wig:A (2.15) BS04 CL 3.1.1.8 GO:0001540 ... P06276 19368529
    187 2wij:A (2.1) BS04 CL 3.1.1.8 GO:0001540 ... P06276 19368529
    188 2wik:A (2.1) BS04 CL 3.1.1.8 GO:0001540 ... P06276 19368529
    189 2wm2:A (2.7) BS01 CL 1.13.11.48 GO:0003824 ... O31266 20080731
    190 2x0r:A (2.915) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    191 2x0r:A (2.915) BS03 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    192 2x0r:B (2.915) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    193 2x0r:B (2.915) BS03 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    194 2xxw:B (2.3) BS02 CL ? GO:0015276 ... P42260 21414913
    195 2z38:A (1.8) BS01 CL 3.2.1.14 GO:0004568 ... Q9SQF7 17608716
    196 2z38:A (1.8) BS02 CL 3.2.1.14 GO:0004568 ... Q9SQF7 17608716
    197 2zdp:A (1.5) BS01 CL 1.14.99.48 GO:0004392 ... Q7A827 18713745
    198 2zdp:B (1.5) BS01 CL 1.14.99.48 GO:0004392 ... Q7A827 18713745
    199 3a7k:A (2.0) BS03 CL N/A GO:0005216 ... N/A 19961859
    200 3a7k:B (2.0) BS03 CL N/A GO:0005216 ... N/A 19961859
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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