Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 151 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1h8g:A (2.4) BS01 CHT 3.5.1.28 N/A P06653 11694890
    2 1h8g:B (2.4) BS01 CHT 3.5.1.28 N/A P06653 11694890
    3 1hcx:A (2.6) BS02 CHT 3.5.1.28 N/A P06653 11694890
    4 1hcx:A (2.6) BS03 CHT 3.5.1.28 N/A P06653 11694890
    5 1hcx:A (2.6) BS04 CHT 3.5.1.28 N/A P06653 11694890
    6 1hcx:B (2.6) BS01 CHT 3.5.1.28 N/A P06653 11694890
    7 1hcx:B (2.6) BS02 CHT 3.5.1.28 N/A P06653 11694890
    8 1oba:A (2.45) BS01 CHT 3.2.1.17 GO:0003796 ... P15057 14527392 MOAD: Kd=3.6mM
    PDBbind: -logKd/Ki=2.44, Kd=3.6mM
    9 1oba:A (2.45) BS02 CHT 3.2.1.17 GO:0003796 ... P15057 14527392 MOAD: Kd=3.6mM
    PDBbind: -logKd/Ki=2.44, Kd=3.6mM
    10 1p0m:A (2.38) BS02 CHT 3.1.1.8 GO:0001540 ... P06276 12869558
    11 2fy3:A (2.27) BS01 CHT 2.3.1.6 GO:0016746 ... P28329 17144655
    12 2ha3:A (2.25) BS01 CHT 3.1.1.7 GO:0001919 ... P21836 16837465 MOAD: Kd=0.93mM
    PDBbind: -logKd/Ki=3.03, Kd=930uM
    13 2ha3:A (2.25) BS02 CHT 3.1.1.7 GO:0001919 ... P21836 16837465 MOAD: Kd=0.93mM
    PDBbind: -logKd/Ki=3.03, Kd=930uM
    14 2ha3:B (2.25) BS01 CHT 3.1.1.7 GO:0001919 ... P21836 16837465 MOAD: Kd=0.93mM
    15 2ha3:B (2.25) BS02 CHT 3.1.1.7 GO:0001919 ... P21836 16837465 MOAD: Kd=0.93mM
    16 2reg:A (1.9) BS01 CHT ? GO:0015871 ... Q92N37 18779321 MOAD: Kd=2.3uM
    PDBbind: -logKd/Ki=5.64, Kd=2.3uM
    17 2reg:B (1.9) BS01 CHT ? GO:0015871 ... Q92N37 18779321 MOAD: Kd=2.3uM
    18 2v04:A (2.1) BS01 CHT ? N/A Q8DR52 19165143
    19 2v04:A (2.1) BS02 CHT ? N/A Q8DR52 19165143
    20 2v04:A (2.1) BS03 CHT ? N/A Q8DR52 19165143
    21 2v04:A (2.1) BS04 CHT ? N/A Q8DR52 19165143
    22 2v04:A (2.1) BS05 CHT ? N/A Q8DR52 19165143
    23 2v04:A (2.1) BS06 CHT ? N/A Q8DR52 19165143
    24 2vyu:A (2.45) BS01 CHT ? N/A Q8DR52 19165143
    25 2vyu:A (2.45) BS02 CHT ? N/A Q8DR52 19165143
    26 2vyu:A (2.45) BS03 CHT ? N/A Q8DR52 19165143
    27 2vyu:A (2.45) BS04 CHT ? N/A Q8DR52 19165143
    28 2vyu:A (2.45) BS05 CHT ? N/A Q8DR52 19165143
    29 2vyu:A (2.45) BS06 CHT ? N/A Q8DR52 19165143
    30 2vyu:A (2.45) BS07 CHT ? N/A Q8DR52 19165143
    31 2ww5:A (1.61) BS01 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    32 2ww5:A (1.61) BS02 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    33 2ww5:A (1.61) BS03 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    34 2ww5:A (1.61) BS04 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    35 2ww5:A (1.61) BS05 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    36 2ww5:A (1.61) BS06 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    37 2ww5:A (1.61) BS07 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    38 2wwc:A (1.75) BS01 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    39 2wwc:A (1.75) BS02 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    40 2wwc:A (1.75) BS03 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    41 2wwc:A (1.75) BS04 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    42 2wwc:A (1.75) BS05 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    43 2wwc:A (1.75) BS06 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    44 2wwc:A (1.75) BS07 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    45 2wwd:A (2.25) BS02 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    46 2wwd:A (2.25) BS03 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    47 2wwd:A (2.25) BS04 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    48 2wwd:A (2.25) BS05 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    49 2wwd:A (2.25) BS06 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    50 2wwd:A (2.25) BS07 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    51 2wwd:A (2.25) BS08 CHT 3.2.1.17 GO:0003796 ... Q8DP07 20400948
    52 2x8m:A (1.85) BS04 CHT ? N/A Q8DR52 24036328
    53 2x8m:A (1.85) BS05 CHT ? N/A Q8DR52 24036328
    54 2x8m:A (1.85) BS06 CHT ? N/A Q8DR52 24036328
    55 2x8m:A (1.85) BS07 CHT ? N/A Q8DR52 24036328
    56 2x8m:A (1.85) BS08 CHT ? N/A Q8DR52 24036328
    57 2x8m:A (1.85) BS09 CHT ? N/A Q8DR52 24036328
    58 2x8p:A (2.27) BS03 CHT ? N/A Q8DR52 24036328
    59 2x8p:A (2.27) BS04 CHT ? N/A Q8DR52 24036328
    60 2x8p:A (2.27) BS05 CHT ? N/A Q8DR52 24036328
    61 3p03:C (3.35) BS01 CHT ? GO:0005886 ... P54582 21364531
    62 3ppq:A (1.91) BS01 CHT ? GO:0022857 ... O32243 21366542 MOAD: Kd=28uM
    PDBbind: -logKd/Ki=4.55, Kd=28uM
    63 3ppq:B (1.91) BS01 CHT ? GO:0022857 ... O32243 21366542 MOAD: Kd=28uM
    64 3r6u:A (1.61) BS01 CHT ? GO:0005886 ... Q45462 21658392 MOAD: Kd=30.5uM
    PDBbind: -logKd/Ki=4.52, Kd=30.5uM
    65 4cnl:A (1.7) BS01 CHT N/A N/A N/A 27917891
    66 4cnl:A (1.7) BS02 CHT N/A N/A N/A 27917891
    67 4cnl:A (1.7) BS03 CHT N/A N/A N/A 27917891
    68 4cnl:A (1.7) BS04 CHT N/A N/A N/A 27917891
    69 4cnl:A (1.7) BS05 CHT N/A N/A N/A 27917891
    70 4cnl:A (1.7) BS06 CHT N/A N/A N/A 27917891
    71 4cnl:A (1.7) BS07 CHT N/A N/A N/A 27917891
    72 4cnl:A (1.7) BS08 CHT N/A N/A N/A 27917891
    73 4doj:C (3.25) BS01 CHT ? GO:0005886 ... P54582 22940865
    74 4i90:A (1.65) BS01 CHT 4.6.1.13 GO:0006629 ... P45723 23576432
    75 4i90:A (1.65) BS02 CHT 4.6.1.13 GO:0006629 ... P45723 23576432
    76 4iwt:A (2.6) BS01 CHT N/A N/A N/A 24520066
    77 4iwt:A (2.6) BS02 CHT N/A N/A N/A 24520066
    78 4iwt:A (2.6) BS03 CHT N/A N/A N/A 24520066
    79 4iwt:A (2.6) BS04 CHT N/A N/A N/A 24520066
    80 4iwt:A (2.6) BS05 CHT N/A N/A N/A 24520066
    81 4iwt:B (2.6) BS01 CHT N/A N/A N/A 24520066
    82 4iwt:B (2.6) BS02 CHT N/A N/A N/A 24520066
    83 4iwt:B (2.6) BS03 CHT N/A N/A N/A 24520066
    84 4iwt:B (2.6) BS04 CHT N/A N/A N/A 24520066
    85 4iwt:B (2.6) BS05 CHT N/A N/A N/A 24520066
    86 4r7b:A (2.01) BS01 CHT 2.7.1.32 GO:0000166 ... Q8DPI4 25781969
    87 4r7b:B (2.01) BS01 CHT 2.7.1.32 GO:0000166 ... Q8DPI4 25781969
    88 4x36:A (2.101) BS02 CHT 3.5.1.28 GO:0005576 ... P06653 26057677
    89 4x36:A (2.101) BS03 CHT 3.5.1.28 GO:0005576 ... P06653 26057677
    90 4x36:A (2.101) BS04 CHT 3.5.1.28 GO:0005576 ... P06653 26057677
    91 4x36:A (2.101) BS05 CHT 3.5.1.28 GO:0005576 ... P06653 26057677
    92 4x36:A (2.101) BS06 CHT 3.5.1.28 GO:0005576 ... P06653 26057677
    93 4zcq:A (1.92) BS01 CHT 2.7.7.15 GO:0003824 ... Q8IEE9 30046154
    94 5a0u:A (2.4) BS01 CHT 4.3.99.4 GO:0003824 ... A0A0M3KL44 26187464
    95 5a0u:B (2.4) BS01 CHT 4.3.99.4 GO:0003824 ... A0A0M3KL44 26187464
    96 5a0u:C (2.4) BS01 CHT 4.3.99.4 GO:0003824 ... A0A0M3KL44 26187464
    97 5a0u:D (2.4) BS01 CHT 4.3.99.4 GO:0003824 ... A0A0M3KL44 26187464
    98 5a0u:E (2.4) BS01 CHT 4.3.99.4 GO:0003824 ... A0A0M3KL44 26187464
    99 5a0u:F (2.4) BS01 CHT 4.3.99.4 GO:0003824 ... A0A0M3KL44 26187464
    100 5a0u:G (2.4) BS01 CHT 4.3.99.4 GO:0003824 ... A0A0M3KL44 26187464
    101 5a0u:H (2.4) BS01 CHT 4.3.99.4 GO:0003824 ... A0A0M3KL44 26187464
    102 5fau:A (1.9) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    103 5fau:B (1.9) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    104 5fau:C (1.9) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    105 5fau:D (1.9) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    106 5faw:A (1.852) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    107 5faw:B (1.852) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    108 5fay:A (1.901) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    109 5fay:B (1.901) BS01 CHT 4.3.99.4 GO:0003824 ... Q30W70 27642068
    110 5ln4:C (2.36) BS01 CHT ? N/A P31522 27507539
    111 6g60:A (1.84) BS01 CHT 3.1.6.6 GO:0005737 ... O69787 35503214
    112 6g60:B (1.84) BS01 CHT 3.1.6.6 GO:0005737 ... O69787 35503214
    113 6g60:C (1.84) BS01 CHT 3.1.6.6 GO:0005737 ... O69787 35503214
    114 6g60:D (1.84) BS01 CHT 3.1.6.6 GO:0005737 ... O69787 35503214
    115 6jyx:A (2.0) BS01 CHT ? N/A A0A0H2UNH0 31104766
    116 6jyx:A (2.0) BS02 CHT ? N/A A0A0H2UNH0 31104766
    117 6jyx:A (2.0) BS03 CHT ? N/A A0A0H2UNH0 31104766
    118 6jyx:A (2.0) BS04 CHT ? N/A A0A0H2UNH0 31104766
    119 6jyx:A (2.0) BS05 CHT ? N/A A0A0H2UNH0 31104766
    120 6jyx:A (2.0) BS06 CHT ? N/A A0A0H2UNH0 31104766
    121 6jyx:A (2.0) BS07 CHT ? N/A A0A0H2UNH0 31104766
    122 6jyx:B (2.0) BS01 CHT ? N/A A0A0H2UNH0 31104766
    123 6jyx:B (2.0) BS02 CHT ? N/A A0A0H2UNH0 31104766
    124 6jyx:B (2.0) BS03 CHT ? N/A A0A0H2UNH0 31104766
    125 6jyx:B (2.0) BS04 CHT ? N/A A0A0H2UNH0 31104766
    126 6jyx:B (2.0) BS05 CHT ? N/A A0A0H2UNH0 31104766
    127 6jyx:B (2.0) BS06 CHT ? N/A A0A0H2UNH0 31104766
    128 6jyx:B (2.0) BS07 CHT ? N/A A0A0H2UNH0 31104766
    129 7b0k:A (3.8) BS01 CHT ? GO:0016020 ... A0A0E7XN74 35235350
    130 7prq:A (2.0) BS01 CHT ? N/A Q9HVF8 35254130
    131 7prq:B (2.0) BS01 CHT ? N/A Q9HVF8 35254130
    132 7pth:A (1.85) BS01 CHT 3.1.6.6 GO:0005737 ... O69787 35503214
    133 7pth:B (1.85) BS01 CHT 3.1.6.6 GO:0005737 ... O69787 35503214
    134 7pth:C (1.85) BS01 CHT 3.1.6.6 GO:0005737 ... O69787 35503214
    135 7pth:D (1.85) BS01 CHT 3.1.6.6 GO:0005737 ... O69787 35503214
    136 7wwb:A (3.86) BS01 CHT ? GO:0005654 ... Q8WWI5 35700727
    137 7wwb:B (3.86) BS01 CHT ? GO:0005654 ... Q8WWI5 35700727
    138 8f6y:A (2.79) BS02 CHT ? GO:0004888 ... P02710 37264005
    139 8f6y:B (2.79) BS01 CHT ? GO:0004888 ... P02718 37264005
    140 8f6y:E (2.79) BS01 CHT ? GO:0004888 ... P02714 37264005
    141 8j77:A (3.7) BS01 CHT ? GO:0001701 ... Q9GZV3 38589607
    142 8qct:A (2.6) BS01 CHT ? GO:0001568 ... Q9Y5Y0 38778100
    143 8qd0:A (2.8) BS01 CHT ? GO:0005739 ... Q9UPI3 38778100
    144 8ubw:A (2.59) BS04 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    145 8uby:A (2.67) BS04 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    146 8ubz:A (3.02) BS03 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    147 8vzn:A (2.77) BS01 CHT ? GO:0001701 ... Q91X85 38693257
    148 8vzo:A (2.49) BS01 CHT ? GO:0001701 ... Q91X85 38693257
    149 8ybq:A (2.59) BS01 CHT N/A N/A N/A 39141726
    150 8ybq:B (2.59) BS01 CHT N/A N/A N/A 39141726
    151 8ybq:C (2.59) BS01 CHT N/A N/A N/A 39141726
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218