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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ahi:A (2.3) BS01 CHO 1.1.1.159 GO:0005829 ... P0AET8 8672472
    2 1ahi:B (2.3) BS01 CHO 1.1.1.159 GO:0005829 ... P0AET8 8672472
    3 1fmc:A (1.8) BS01 CHO 1.1.1.159 GO:0005829 ... P0AET8 8672472
    4 1fmc:B (1.8) BS01 CHO 1.1.1.159 GO:0005829 ... P0AET8 8672472
    5 2b04:A (2.5) BS01 CHO 3.1.1.4 GO:0002446 ... P00592 17434532
    6 2lba:A (-1.00) BS01 CHO ? GO:0005504 ... F1NUJ7 21917914
    7 2lba:A (-1.00) BS02 CHO ? GO:0005504 ... F1NUJ7 21917914
    8 2lfo:A (-1.00) BS02 CHO ? GO:0005504 ... P80226 22298334
    9 2mm3:A (-1.00) BS02 CHO ? GO:0005504 ... P51161 26613247
    10 6e47:A (1.95) BS03 CHO ? N/A Q80J94 30194229
    11 6e47:A (1.95) BS04 CHO ? N/A Q80J94 30194229
    12 6e47:B (1.95) BS01 CHO ? N/A Q80J94 30194229
    13 6e47:B (1.95) BS02 CHO ? N/A Q80J94 30194229
    14 6gvz:A (1.54) BS01 CHO ? N/A J9XXB7 30355683 MOAD: Kd=0.4uM
    PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    15 6gw1:A (1.9) BS01 CHO ? N/A Q5F4T5 30355683 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=5.14, Kd=7.2uM
    16 6gw1:B (1.9) BS01 CHO ? N/A Q5F4T5 30355683 MOAD: Kd=0.000000064M
    17 6gw4:A (2.295) BS01 CHO ? N/A A0ZNP3 30355683 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    18 6h6l:A (2.5) BS03 CHO ? N/A A7U694 N/A
    19 6h6l:A (2.5) BS04 CHO ? N/A A7U694 N/A
    20 6h6l:B (2.5) BS01 CHO ? N/A A7U694 N/A
    21 6h6l:B (2.5) BS02 CHO ? N/A A7U694 N/A
    22 6h6l:C (2.5) BS03 CHO ? N/A A7U694 N/A
    23 6h6l:C (2.5) BS04 CHO ? N/A A7U694 N/A
    24 6h6l:D (2.5) BS01 CHO ? N/A A7U694 N/A
    25 6h6l:D (2.5) BS02 CHO ? N/A A7U694 N/A
    26 6h6m:A (2.38) BS01 CHO ? N/A A7YK37 N/A
    27 6h6m:A (2.38) BS02 CHO ? N/A A7YK37 N/A
    28 6h6m:B (2.38) BS01 CHO ? N/A A7YK37 N/A
    29 6h6m:B (2.38) BS02 CHO ? N/A A7YK37 N/A
    30 6h6m:C (2.38) BS01 CHO ? N/A A7YK37 N/A
    31 6h6m:C (2.38) BS02 CHO ? N/A A7YK37 N/A
    32 6h6m:D (2.38) BS01 CHO ? N/A A7YK37 N/A
    33 6h6m:D (2.38) BS02 CHO ? N/A A7YK37 N/A
    34 6p4j:A (3.1) BS01 CHO ? GO:0019049 ... Q2V8W4 31341042
    35 6p4j:A (3.1) BS02 CHO ? GO:0019049 ... Q2V8W4 31341042
    36 6p4j:B (3.1) BS01 CHO ? GO:0019049 ... Q2V8W4 31341042
    37 6p4j:B (3.1) BS02 CHO ? GO:0019049 ... Q2V8W4 31341042
    38 6p4j:C (3.1) BS01 CHO ? GO:0019049 ... Q2V8W4 31341042
    39 6p4j:C (3.1) BS02 CHO ? GO:0019049 ... Q2V8W4 31341042
    40 6xw7:A (2.15) BS01 CHO ? N/A Q80J94 32321816
    41 6xw7:A (2.15) BS02 CHO ? N/A Q80J94 32321816
    42 6xw7:B (2.15) BS01 CHO ? N/A Q80J94 32321816
    43 6xw7:B (2.15) BS02 CHO ? N/A Q80J94 32321816
    44 6xw7:E (2.15) BS01 CHO ? N/A Q80J94 32321816
    45 6xw7:E (2.15) BS02 CHO ? N/A Q80J94 32321816
    46 6xw7:F (2.15) BS01 CHO ? N/A Q80J94 32321816
    47 6xw7:F (2.15) BS02 CHO ? N/A Q80J94 32321816
    48 7zyi:A (2.88) BS02 CHO ? GO:0001618 ... Q14973 35726088
    49 7zyi:A (2.88) BS03 CHO ? GO:0001618 ... Q14973 35726088
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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