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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b3n:A (2.65) BS01 CER 2.3.1.179 GO:0004315 ... P0AAI5 10037680
    2 1fj8:A (2.27) BS01 CER 2.3.1.41 GO:0004315 ... P0A953 11050088
    3 1fj8:B (2.27) BS01 CER 2.3.1.41 GO:0004315 ... P0A953 11050088
    4 1fj8:C (2.27) BS01 CER 2.3.1.41 GO:0004315 ... P0A953 11050088
    5 1fj8:D (2.27) BS01 CER 2.3.1.41 GO:0004315 ... P0A953 11050088
    6 1fj8:D (2.27) BS02 CER 2.3.1.41 GO:0004315 ... P0A953 11050088
    7 2qo3:A (2.59) BS01 CER 2.3.1.94 GO:0004315 ... Q03132 17719492
    8 2qo3:B (2.59) BS01 CER 2.3.1.94 GO:0004315 ... Q03132 17719492
    9 2vkz:A (4.0) BS01 CER 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 18725634
    10 2vkz:B (4.0) BS01 CER 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 18725634
    11 2vkz:C (4.0) BS01 CER 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 18725634
    12 3hmj:A (4.0) BS01 CER 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    13 3hmj:B (4.0) BS01 CER 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    14 3hmj:C (4.0) BS01 CER 1.1.1.100
    2.3.1.41
    2.3.1.86    		 GO:0000287 ... P19097 19679086
    15 3s20:A (1.8796) BS01 CER 2.3.3.20 GO:0004315 ... Q8PDX2 22524624
    16 3s20:B (1.8796) BS01 CER 2.3.3.20 GO:0004315 ... Q8PDX2 22524624
    17 3s21:A (1.7001) BS02 CER 2.3.3.20 GO:0004315 ... Q8PDX2 22524624
    18 3s23:A (1.9484) BS03 CER 2.3.3.20 GO:0004315 ... Q8PDX2 22524624
    19 5vxe:A (1.66) BS01 CER 2.3.3.20 GO:0004315 ... Q8PDX2 29025976
    20 5vxg:A (2.07) BS01 CER 2.3.3.20 GO:0004315 ... Q8PDX2 29025976
    21 5vxi:A (2.08) BS02 CER 2.3.3.20 GO:0004315 ... Q8PDX2 29025976
    22 6b2u:A (2.04) BS02 CER 2.3.3.20 GO:0004315 ... Q8PDX2 N/A
    23 8qm1:A (1.91) BS01 CER 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    24 8qm1:B (1.91) BS01 CER 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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