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BioLiP
Download all results in tab-seperated text for 51 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cef:A (2.04) BS01 CEF 3.4.16.4 GO:0004180 ... P15555 7626623
    2 1iyo:A (1.8) BS01 CEF 3.5.2.6 GO:0008800 ... Q47066 12221102
    3 2c5w:B (2.55) BS03 CEF 2.4.99.28
    3.4.16.4    		 GO:0008658 ... Q8DR59 16316661
    4 2xd1:A (3.0) BS01 CEF 2.4.1.129 GO:0008658 ... Q7CRA4 15637155
    5 2xd1:B (3.0) BS01 CEF 2.4.1.129 GO:0008658 ... Q7CRA4 15637155
    6 2zqa:A (0.95) BS01 CEF 3.5.2.6 GO:0008800 ... Q47066 N/A
    7 3ixh:B (2.3) BS01 CEF 3.5.2.6 GO:0008800 ... P00811 19913034
    8 3m2k:A (3.5) BS01 CEF 3.5.2.6 GO:0005886 ... P00808 21443768
    9 3m2k:B (3.5) BS01 CEF 3.5.2.6 GO:0005886 ... P00808 21443768
    10 3sh9:A (1.9) BS01 CEF 3.5.2.6 GO:0005886 ... P00808 21705325
    11 3sh9:B (1.9) BS01 CEF 3.5.2.6 GO:0005886 ... P00808 21705325
    12 3upp:A (2.4) BS01 CEF 3.4.16.4 GO:0005829 ... P9WKD1 22365933
    13 3upp:B (2.4) BS01 CEF 3.4.16.4 GO:0005829 ... P9WKD1 22365933
    14 3vsl:A (2.4) BS01 CEF ? GO:0008658 ... A0A0H3K0B9 22846910
    15 3vsl:B (2.4) BS01 CEF ? GO:0008658 ... A0A0H3K0B9 22846910
    16 4ebp:B (2.29) BS01 CEF 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    17 4ebp:C (2.29) BS01 CEF 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    18 4kg2:A (1.89) BS01 CEF 3.5.2.6 GO:0008800 ... P00811 N/A
    19 4kg2:B (1.89) BS01 CEF 3.5.2.6 GO:0008800 ... P00811 N/A
    20 4kg5:A (2.11) BS01 CEF 3.5.2.6 GO:0008800 ... P00811 N/A
    21 4kg5:B (2.11) BS01 CEF 3.5.2.6 GO:0008800 ... P00811 N/A
    22 4kg5:C (2.11) BS01 CEF 3.5.2.6 GO:0008800 ... P00811 N/A
    23 4kg5:D (2.11) BS01 CEF 3.5.2.6 GO:0008800 ... P00811 N/A
    24 5a92:A (1.05) BS01 CEF 3.5.2.6 GO:0008800 ... E1ANH6 26630115
    25 5a93:A (1.598) BS01 CEF 3.5.2.6 GO:0008800 ... E1ANH6 26630115
    26 5wi3:A (1.81) BS01 CEF 3.5.2.6 GO:0008658 ... I6YCI1 29229762
    27 5wi3:B (1.81) BS01 CEF 3.5.2.6 GO:0008658 ... I6YCI1 29229762
    28 5zqd:A (1.888) BS01 CEF ? GO:0006508 ... Q8Y3M3 30082290
    29 5zqd:A (1.888) BS02 CEF ? GO:0006508 ... Q8Y3M3 30082290
    30 5zqd:B (1.888) BS01 CEF ? GO:0006508 ... Q8Y3M3 30082290
    31 5zqd:C (1.888) BS01 CEF ? GO:0006508 ... Q8Y3M3 30082290
    32 5zqd:C (1.888) BS02 CEF ? GO:0006508 ... Q8Y3M3 30082290
    33 5zqd:D (1.888) BS01 CEF ? GO:0006508 ... Q8Y3M3 30082290
    34 5zqd:D (1.888) BS02 CEF ? GO:0006508 ... Q8Y3M3 30082290
    35 5zqd:E (1.888) BS01 CEF ? GO:0006508 ... Q8Y3M3 30082290
    36 5zqd:F (1.888) BS01 CEF ? GO:0006508 ... Q8Y3M3 30082290
    37 5zqd:G (1.888) BS01 CEF ? GO:0006508 ... Q8Y3M3 30082290
    38 5zqd:H (1.888) BS01 CEF ? GO:0006508 ... Q8Y3M3 30082290
    39 5zqd:H (1.888) BS02 CEF ? GO:0006508 ... Q8Y3M3 30082290
    40 6k9t:A (1.459) BS01 CEF 3.5.2.6 GO:0000166 ... Q9XB24 31451494
    41 6p54:B (1.83) BS01 CEF 3.4.16.4 GO:0008658 ... P08149 31362987
    42 6pqc:A (2.1) BS01 CEF N/A GO:0008658 ... N/A 31550535
    43 6pqi:A (2.05) BS01 CEF 3.5.2.6 GO:0008658 ... Q6XEC0 31872762
    44 6pqi:B (2.05) BS01 CEF 3.5.2.6 GO:0008658 ... Q6XEC0 31872762
    45 6pqi:C (2.05) BS01 CEF 3.5.2.6 GO:0008658 ... Q6XEC0 31872762
    46 6pqi:D (2.05) BS01 CEF 3.5.2.6 GO:0008658 ... Q6XEC0 31872762
    47 6vbd:A (1.8) BS01 CEF 3.4.16.4 GO:0008658 ... F2Z7K9 N/A
    48 6z23:A (1.31) BS01 CEF 3.5.2.6 GO:0008800 ... Q9F663 33257320
    49 7k2w:A (1.4) BS01 CEF 3.5.2.6 GO:0008800 ... Q9L5C7 33109613
    50 7rpg:A (1.62) BS01 CEF 3.5.2.6 GO:0008658 ... Q8RLA6 35709986
    51 8c5w:A (2.51) BS01 CEF ? GO:0008658 ... Q5HNZ7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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