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BioLiP
Download all results in tab-seperated text for 227 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6ahg:B (2.83) BS03 CD ? GO:0030246 ... P02866 30380822
    202 6ahg:C (2.83) BS01 CD ? GO:0030246 ... P02866 30380822
    203 6ahg:C (2.83) BS03 CD ? GO:0030246 ... P02866 30380822
    204 6grv:A (-1.00) BS01 CD ? GO:0008270 ... J2EKT7 30191219
    205 6grv:A (-1.00) BS02 CD ? GO:0008270 ... J2EKT7 30191219
    206 6grv:A (-1.00) BS03 CD ? GO:0008270 ... J2EKT7 30191219
    207 6grv:A (-1.00) BS04 CD ? GO:0008270 ... J2EKT7 30191219
    208 6gv6:A (-1.00) BS01 CD ? GO:0046872 ... J2EKT7 30191219
    209 6gv6:A (-1.00) BS02 CD ? GO:0046872 ... J2EKT7 30191219
    210 6gv6:A (-1.00) BS03 CD ? GO:0046872 ... J2EKT7 30191219
    211 6gv6:A (-1.00) BS04 CD ? GO:0046872 ... J2EKT7 30191219
    212 6gv7:A (-1.00) BS01 CD ? GO:0046872 ... J2EKT7 30191219
    213 6gv7:A (-1.00) BS02 CD ? GO:0046872 ... J2EKT7 30191219
    214 6gv7:A (-1.00) BS03 CD ? GO:0046872 ... J2EKT7 30191219
    215 6gv7:A (-1.00) BS04 CD ? GO:0046872 ... J2EKT7 30191219
    216 6jee:A (1.3) BS01 CD ? GO:0005506 ... P02791 30993287
    217 6jgx:A (2.71) BS03 CD ? GO:0003677 ... Q93TP7 31548408
    218 6jgx:A (2.71) BS04 CD ? GO:0003677 ... Q93TP7 31548408
    219 6jgx:B (2.71) BS03 CD ? GO:0003677 ... Q93TP7 31548408
    220 6jgx:B (2.71) BS04 CD ? GO:0003677 ... Q93TP7 31548408
    221 6tso:AAA (2.1) BS09 CD ? GO:0046872 ... Q8X123 34235469
    222 6tso:AAA (2.1) BS10 CD ? GO:0046872 ... Q8X123 34235469
    223 8ap5:A (-1.00) BS01 CD ? GO:0046872 ... P17512 38151062
    224 8ap5:A (-1.00) BS02 CD ? GO:0046872 ... P17512 38151062
    225 8ap5:A (-1.00) BS03 CD ? GO:0046872 ... P17512 38151062
    226 8h1g:A (1.43) BS01 CD ? GO:0005524 ... O67518 37487639
    227 8h1g:A (1.43) BS02 CD ? GO:0005524 ... O67518 37487639
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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