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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 227 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aqb:A (1.65) BS01 CD ? GO:0005501 ... P27485 9757135
    2 1aw6:A (-1.00) BS01 CD ? GO:0000981 ... P04386 9460244
    3 1aw6:A (-1.00) BS02 CD ? GO:0000981 ... P04386 9460244
    4 1cdp:A (1.6) BS01 CD ? GO:0005509 ... P02618 2777802
    5 1cdp:A (1.6) BS02 CD ? GO:0005509 ... P02618 2777802
    6 1cfz:A (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    7 1cfz:B (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    8 1cfz:C (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    9 1cfz:D (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    10 1cfz:E (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    11 1cfz:F (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    12 1cld:A (-1.00) BS01 CD ? GO:0000981 ... P08657 7552715
    13 1cld:A (-1.00) BS02 CD ? GO:0000981 ... P08657 7552715
    14 1con:A (2.0) BS01 CD ? GO:0030246 ... P02866 15299493
    15 1con:A (2.0) BS03 CD ? GO:0030246 ... P02866 15299493
    16 1dfs:A (-1.00) BS01 CD ? GO:0046872 ... P02802 10631978
    17 1dfs:A (-1.00) BS02 CD ? GO:0046872 ... P02802 10631978
    18 1dfs:A (-1.00) BS03 CD ? GO:0046872 ... P02802 10631978
    19 1dfs:A (-1.00) BS04 CD ? GO:0046872 ... P02802 10631978
    20 1dft:A (-1.00) BS01 CD ? GO:0046872 ... P02802 10631978
    21 1dft:A (-1.00) BS02 CD ? GO:0046872 ... P02802 10631978
    22 1dmc:A (-1.00) BS01 CD ? GO:0046872 ... P55949 7819257
    23 1dmc:A (-1.00) BS02 CD ? GO:0046872 ... P55949 7819257
    24 1dmc:A (-1.00) BS03 CD ? GO:0046872 ... P55949 7819257
    25 1dmd:A (-1.00) BS01 CD ? GO:0046872 ... P55949 7819257
    26 1dmd:A (-1.00) BS02 CD ? GO:0046872 ... P55949 7819257
    27 1dmd:A (-1.00) BS03 CD ? GO:0046872 ... P55949 7819257
    28 1ee3:P (1.7) BS01 CD 3.4.17.1 GO:0004181 ... P00730 11941507
    29 1ee3:P (1.7) BS02 CD 3.4.17.1 GO:0004181 ... P00730 11941507
    30 1ell:P (1.76) BS01 CD 3.4.17.1 GO:0004181 ... P00730 11941507
    31 1ell:P (1.76) BS02 CD 3.4.17.1 GO:0004181 ... P00730 11941507
    32 1elm:P (2.0) BS01 CD 3.4.17.1 GO:0004181 ... P00730 11941507
    33 1gyn:A (2.0) BS01 CD 4.1.2.13 GO:0004332 ... P0AB71 12595741
    34 1gyn:A (2.0) BS02 CD 4.1.2.13 GO:0004332 ... P0AB71 12595741
    35 1gyn:A (2.0) BS03 CD 4.1.2.13 GO:0004332 ... P0AB71 12595741
    36 1gyn:A (2.0) BS04 CD 4.1.2.13 GO:0004332 ... P0AB71 12595741
    37 1h96:A (1.6) BS01 CD ? GO:0005506 ... P29391 11679711
    38 1h96:A (1.6) BS02 CD ? GO:0005506 ... P29391 11679711
    39 1h96:A (1.6) BS03 CD ? GO:0005506 ... P29391 11679711
    40 1h9p:A (2.0) BS01 CD ? GO:0005537 ... P81637 11453695
    41 1h9p:A (2.0) BS02 CD ? GO:0005537 ... P81637 11453695
    42 1h9p:A (2.0) BS03 CD ? GO:0005537 ... P81637 11453695
    43 1i0d:A (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    44 1i0d:B (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    45 1jgm:A (1.3) BS01 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    46 1jgm:A (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    47 1jgm:B (1.3) BS01 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    48 1jgm:B (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    49 1kuf:A (1.35) BS01 CD 3.4.24.- GO:0004222 ... O57413 12077431
    50 1kuf:A (1.35) BS02 CD 3.4.24.- GO:0004222 ... O57413 12077431
    51 1kuf:A (1.35) BS03 CD 3.4.24.- GO:0004222 ... O57413 12077431
    52 1lb3:A (1.21) BS01 CD ? GO:0005506 ... P29391 12459904
    53 1lb3:A (1.21) BS02 CD ? GO:0005506 ... P29391 12459904
    54 1lb3:A (1.21) BS03 CD ? GO:0005506 ... P29391 12459904
    55 1m8r:A (1.9) BS01 CD 3.1.1.4 GO:0004623 ... O42191 12504079
    56 1m8s:A (1.9) BS01 CD 3.1.1.4 GO:0004623 ... O42191 12504079
    57 1mfm:A (1.02) BS03 CD 1.15.1.1 GO:0000302 ... P00441 10329151
    58 1mfm:A (1.02) BS04 CD 1.15.1.1 GO:0000302 ... P00441 10329151
    59 1mfm:A (1.02) BS05 CD 1.15.1.1 GO:0000302 ... P00441 10329151
    60 1np8:A (2.0) BS01 CD ? GO:0005509 ... Q64537 14579356
    61 1np8:A (2.0) BS02 CD ? GO:0005509 ... Q64537 14579356
    62 1np8:A (2.0) BS03 CD ? GO:0005509 ... Q64537 14579356
    63 1np8:A (2.0) BS04 CD ? GO:0005509 ... Q64537 14579356
    64 1np8:A (2.0) BS05 CD ? GO:0005509 ... Q64537 14579356
    65 1np8:B (2.0) BS01 CD ? GO:0005509 ... Q64537 14579356
    66 1np8:B (2.0) BS02 CD ? GO:0005509 ... Q64537 14579356
    67 1np8:B (2.0) BS03 CD ? GO:0005509 ... Q64537 14579356
    68 1np8:B (2.0) BS04 CD ? GO:0005509 ... Q64537 14579356
    69 1np8:B (2.0) BS05 CD ? GO:0005509 ... Q64537 14579356
    70 1oee:A (2.1) BS01 CD ? GO:0005737 ... P76344 12909634
    71 1psc:A (2.0) BS01 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    72 1psc:A (2.0) BS02 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    73 1psc:B (2.0) BS01 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    74 1psc:B (2.0) BS02 CD 3.1.8.1 GO:0008270 ... P0A434 7794910
    75 1s24:A (-1.00) BS01 CD ? GO:0005506 ... P00272 15023067
    76 1uvo:A (1.85) BS01 CD 3.4.21.36 GO:0004252 ... P00772 15840915
    77 1uvp:A (1.85) BS01 CD 3.4.21.36 GO:0004252 ... P00772 15840915
    78 1vsj:A (2.1) BS01 CD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... O92956 9218451
    79 1vsj:A (2.1) BS02 CD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... O92956 9218451
    80 1wje:A (-1.00) BS01 CD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0008270 ... P04587 9865962
    81 1wje:B (-1.00) BS01 CD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0008270 ... P04587 9865962
    82 1wjf:A (-1.00) BS01 CD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0008270 ... P04587 9865962
    83 1wjf:B (-1.00) BS01 CD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0008270 ... P04587 9865962
    84 1zww:A (2.3) BS01 CD 2.3.1.- GO:0005737 ... Q62420 16023669
    85 1zww:B (2.3) BS01 CD 2.3.1.- GO:0005737 ... Q62420 16023669
    86 1zww:B (2.3) BS02 CD 2.3.1.- GO:0005737 ... Q62420 16023669
    87 2enr:A (2.35) BS01 CD ? GO:0030246 ... P02866 11092923
    88 2enr:A (2.35) BS02 CD ? GO:0030246 ... P02866 11092923
    89 2ev0:A (1.65) BS01 CD ? GO:0003677 ... P54512 16533030
    90 2ev0:A (1.65) BS02 CD ? GO:0003677 ... P54512 16533030
    91 2ev0:B (1.65) BS01 CD ? GO:0003677 ... P54512 16533030
    92 2ev0:B (1.65) BS02 CD ? GO:0003677 ... P54512 16533030
    93 2gj2:A (2.35) BS01 CD ? N/A Q91LD0 16956937
    94 2gj2:A (2.35) BS02 CD ? N/A Q91LD0 16956937
    95 2gj2:B (2.35) BS01 CD ? N/A Q91LD0 16956937
    96 2gj2:B (2.35) BS02 CD ? N/A Q91LD0 16956937
    97 2gj2:C (2.35) BS01 CD ? N/A Q91LD0 16956937
    98 2gj2:C (2.35) BS02 CD ? N/A Q91LD0 16956937
    99 2gj2:D (2.35) BS01 CD ? N/A Q91LD0 16956937
    100 2gj2:D (2.35) BS02 CD ? N/A Q91LD0 16956937
    101 2gsm:B (2.0) BS05 CD 7.1.1.9 GO:0004129 ... Q03736 17050688
    102 2gsm:B (2.0) BS06 CD 7.1.1.9 GO:0004129 ... Q03736 17050688
    103 2gsm:D (2.0) BS05 CD 7.1.1.9 GO:0004129 ... Q03736 17050688
    104 2gsm:D (2.0) BS06 CD 7.1.1.9 GO:0004129 ... Q03736 17050688
    105 2jhf:A (1.0) BS01 CD 1.1.1.1 GO:0004022 ... P00327 17429946
    106 2jhf:A (1.0) BS02 CD 1.1.1.1 GO:0004022 ... P00327 17429946
    107 2jhf:B (1.0) BS01 CD 1.1.1.1 GO:0004022 ... P00327 17429946
    108 2jhf:B (1.0) BS02 CD 1.1.1.1 GO:0004022 ... P00327 17429946
    109 2jsc:A (-1.00) BS01 CD ? GO:0003677 ... P9WMI9 17599915
    110 2jsc:B (-1.00) BS01 CD ? GO:0003677 ... P9WMI9 17599915
    111 2l1o:A (-1.00) BS01 CD ? N/A Q38895 21618209
    112 2x28:A (2.15) BS01 CD ? GO:0016020 ... Q6RUA7 20164173
    113 2x28:A (2.15) BS02 CD ? GO:0016020 ... Q6RUA7 20164173
    114 2znb:A (2.15) BS01 CD 3.5.2.6 GO:0008270 ... P25910 9416622
    115 2znb:A (2.15) BS02 CD 3.5.2.6 GO:0008270 ... P25910 9416622
    116 2znb:B (2.15) BS01 CD 3.5.2.6 GO:0008270 ... P25910 9416622
    117 2znb:B (2.15) BS02 CD 3.5.2.6 GO:0008270 ... P25910 9416622
    118 3bob:A (1.45) BS01 CD 4.2.1.1 N/A Q50EL4 18322527
    119 3boe:A (1.4) BS01 CD 4.2.1.1 N/A Q50EL4 18322527
    120 3boh:A (1.7) BS01 CD 4.2.1.1 N/A Q50EL4 18322527
    121 3boh:B (1.7) BS01 CD 4.2.1.1 N/A Q50EL4 18322527
    122 3cjk:B (1.8) BS01 CD 7.2.2.8 GO:0005507 ... Q04656 19453293
    123 3h1u:A (3.0) BS01 CD ? N/A P0CH28 20003470
    124 3h1u:A (3.0) BS02 CD ? N/A P0CH28 20003470
    125 3h1u:B (3.0) BS01 CD ? N/A P0CH28 20003470
    126 3h1u:B (3.0) BS02 CD ? N/A P0CH28 20003470
    127 3kbm:A (2.0) BS01 CD 5.3.1.5 GO:0000287 ... P24300 20541506
    128 3kbm:A (2.0) BS02 CD 5.3.1.5 GO:0000287 ... P24300 20541506
    129 3kbs:A (1.8) BS01 CD 5.3.1.5 GO:0000287 ... P24300 20541506
    130 3kbs:A (1.8) BS02 CD 5.3.1.5 GO:0000287 ... P24300 20541506
    131 3kcl:A (2.0) BS01 CD 5.3.1.5 GO:0000287 ... P24300 20541506
    132 3kcl:A (2.0) BS02 CD 5.3.1.5 GO:0000287 ... P24300 20541506
    133 3kxd:A (2.2) BS01 CD ? GO:0006813 ... O27564 20371380
    134 3kxd:A (2.2) BS02 CD ? GO:0006813 ... O27564 20371380
    135 3kxd:B (2.2) BS01 CD ? GO:0006813 ... O27564 20371380
    136 3mmw:A (1.85) BS01 CD ? GO:0000272 ... Q9X273 20599513
    137 3mmw:A (1.85) BS02 CD ? GO:0000272 ... Q9X273 20599513
    138 3mmw:B (1.85) BS01 CD ? GO:0000272 ... Q9X273 20599513
    139 3mmw:B (1.85) BS02 CD ? GO:0000272 ... Q9X273 20599513
    140 3mmw:C (1.85) BS01 CD ? GO:0000272 ... Q9X273 20599513
    141 3mmw:C (1.85) BS02 CD ? GO:0000272 ... Q9X273 20599513
    142 3mmw:D (1.85) BS01 CD ? GO:0000272 ... Q9X273 20599513
    143 3mmw:D (1.85) BS02 CD ? GO:0000272 ... Q9X273 20599513
    144 3p5u:A (1.5) BS01 CD 3.4.22.14 GO:0006508 ... A5HII2 21123873
    145 3p5v:A (1.9) BS01 CD 3.4.22.14 GO:0006508 ... A5HII2 21123873
    146 3p5x:A (2.2) BS01 CD 3.4.22.14 GO:0006508 ... A5HII2 21123873
    147 3u54:A (2.35) BS01 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    148 3u54:A (2.35) BS02 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    149 3u54:A (2.35) BS03 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    150 3u54:A (2.35) BS04 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    151 3u54:B (2.35) BS01 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    152 3u54:B (2.35) BS02 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    153 3u54:B (2.35) BS03 CD 6.3.2.6 GO:0004639 ... O57978 23137517
    154 3uk8:A (2.3) BS01 CD 4.2.1.1 N/A Q50EL4 22381359
    155 3uk8:B (2.3) BS01 CD 4.2.1.1 N/A Q50EL4 22381359
    156 4efp:A (1.33) BS01 CD ? GO:0005576 ... E5EVW2 22948915
    157 4efp:B (1.33) BS01 CD ? GO:0005576 ... E5EVW2 22948915
    158 4evc:A (2.4) BS01 CD ? GO:0005737 ... G1UIZ3 22618234
    159 4evc:A (2.4) BS02 CD ? GO:0005737 ... G1UIZ3 22618234
    160 4evc:A (2.4) BS03 CD ? GO:0005737 ... G1UIZ3 22618234
    161 4evc:A (2.4) BS04 CD ? GO:0005737 ... G1UIZ3 22618234
    162 4evc:A (2.4) BS05 CD ? GO:0005737 ... G1UIZ3 22618234
    163 4fkc:A (2.6) BS01 CD ? GO:0004177 ... C6A2N7 23143231
    164 4fkc:A (2.6) BS02 CD ? GO:0004177 ... C6A2N7 23143231
    165 4fkc:A (2.6) BS03 CD ? GO:0004177 ... C6A2N7 23143231
    166 4u9r:A (2.17) BS01 CD ? GO:0046872 ... Q1LAJ7 26192600
    167 4u9r:A (2.17) BS02 CD ? GO:0046872 ... Q1LAJ7 26192600
    168 4uto:A (1.55) BS01 CD ? GO:0007155 ... P0A4G2 25731976
    169 4uto:B (1.55) BS01 CD ? GO:0007155 ... P0A4G2 25731976
    170 4xm1:A (1.8) BS01 CD ? GO:0016811 ... Q8U3V1 26057790
    171 4xm1:B (1.8) BS01 CD ? GO:0016811 ... Q8U3V1 26057790
    172 4xm1:C (1.8) BS01 CD ? GO:0016811 ... Q8U3V1 26057790
    173 4xm1:D (1.8) BS01 CD ? GO:0016811 ... Q8U3V1 26057790
    174 4xm1:E (1.8) BS01 CD ? GO:0016811 ... Q8U3V1 26057790
    175 4xm1:F (1.8) BS01 CD ? GO:0016811 ... Q8U3V1 26057790
    176 5ai2:A (1.75) BS01 CD ? GO:0009055 ... P24297 27511806
    177 5ai3:A (1.02) BS01 CD ? GO:0005506 ... P24297 27511806
    178 5cax:A (2.451) BS01 CD ? GO:0009055 ... Q8TQ93 26684934
    179 5cax:A (2.451) BS02 CD ? GO:0009055 ... Q8TQ93 26684934
    180 5cax:B (2.451) BS01 CD ? GO:0009055 ... Q8TQ93 26684934
    181 5cax:B (2.451) BS02 CD ? GO:0009055 ... Q8TQ93 26684934
    182 5cax:B (2.451) BS03 CD ? GO:0009055 ... Q8TQ93 26684934
    183 5cax:C (2.451) BS01 CD ? GO:0009055 ... Q8TQ93 26684934
    184 5cax:D (2.451) BS01 CD ? GO:0009055 ... Q8TQ93 26684934
    185 5cax:D (2.451) BS02 CD ? GO:0009055 ... Q8TQ93 26684934
    186 5hv0:A (1.63) BS01 CD ? GO:0003674 ... A0A4Y1WAP5 27139630
    187 5hv0:A (1.63) BS02 CD ? GO:0003674 ... A0A4Y1WAP5 27139630
    188 5hv0:B (1.63) BS01 CD ? GO:0003674 ... A0A4Y1WAP5 27139630
    189 5hv0:B (1.63) BS02 CD ? GO:0003674 ... A0A4Y1WAP5 27139630
    190 5hv4:A (2.35) BS01 CD ? GO:0003674 ... A0A4Y1WAP5 27139630
    191 5hv4:A (2.35) BS02 CD ? GO:0003674 ... A0A4Y1WAP5 27139630
    192 5mvv:A (1.4) BS02 CD 3.6.4.- GO:0005200 ... Q8I4X0 28695858
    193 5yrx:A (1.9) BS01 CD ? GO:0003677 ... P9WNR9 29154992
    194 5yzi:A (2.519) BS01 CD 1.1.1.42 GO:0000287 ... O88844 29923039
    195 5yzi:B (2.519) BS01 CD 1.1.1.42 GO:0000287 ... O88844 29923039
    196 5zi8:A (2.2) BS01 CD ? GO:0003677 ... I6X7F9 30266832
    197 5zi8:B (2.2) BS01 CD ? GO:0003677 ... I6X7F9 30266832
    198 6ahg:A (2.83) BS02 CD ? GO:0030246 ... P02866 30380822
    199 6ahg:A (2.83) BS03 CD ? GO:0030246 ... P02866 30380822
    200 6ahg:B (2.83) BS02 CD ? GO:0030246 ... P02866 30380822
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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