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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1iem:A (2.3) BS01 CB4 3.5.2.6 GO:0008800 ... P00811 11478888 PDBbind: -logKd/Ki=7.70, Ki=20nM
    2 1iem:B (2.3) BS01 CB4 3.5.2.6 GO:0008800 ... P00811 11478888
    3 1jwv:A (1.85) BS01 CB4 3.5.2.6 GO:0005515 ... P62593 12079336
    4 1m40:A (0.85) BS01 CB4 3.5.2.6 GO:0005515 ... P62593 11996574
    5 1yly:A (1.25) BS01 CB4 3.5.2.6 GO:0008800 ... Q9L5C7 15826180 PDBbind: -logKd/Ki=7.82, Ki=0.015uM
    6 1yly:B (1.25) BS01 CB4 3.5.2.6 GO:0008800 ... Q9L5C7 15826180
    7 1ylz:A (1.35) BS01 CB4 3.5.2.6 GO:0008800 ... Q9L5C7 15826180
    8 1ylz:B (1.35) BS01 CB4 3.5.2.6 GO:0008800 ... Q9L5C7 15826180
    9 3mke:A (1.75) BS03 CB4 3.5.2.6 GO:0008800 ... P0AD64 21041505 PDBbind: -logKd/Ki=5.66, Ki=2.2uM
    BindingDB: Ki=2200nM
    10 4ua9:A (0.84) BS01 CB4 3.5.2.6 GO:0008800 ... H6UQI0 26057252
    11 4ua9:B (0.84) BS01 CB4 3.5.2.6 GO:0008800 ... H6UQI0 26057252
    12 5chm:A (1.9) BS01 CB4 3.5.2.6 GO:0008800 ... Q9L387 32349291
    13 5glb:A (1.6) BS01 CB4 3.5.2.6 GO:0008800 ... Q2T5A3 27827433
    14 5gld:A (1.7) BS01 CB4 3.5.2.6 GO:0008800 ... Q2T5A3 27827433
    15 6afn:A (1.4) BS01 CB4 3.5.2.6 GO:0008800 ... Q2T5A3 N/A
    16 6afp:A (1.398) BS01 CB4 3.5.2.6 GO:0008800 ... Q2T5A3 N/A
    17 6afp:B (1.398) BS01 CB4 3.5.2.6 GO:0008800 ... Q2T5A3 N/A
    18 8sdr:A (1.35) BS01 CB4 3.5.2.6 GO:0008800 ... P24735 37850746
    19 8sds:A (1.63) BS01 CB4 3.5.2.6 GO:0008800 ... P24735 37850746
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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