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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dlt:A (1.9) BS02 CAQ 1.13.11.1 GO:0003824 ... P07773 10801478
    2 1dlt:B (1.9) BS02 CAQ 1.13.11.1 GO:0003824 ... P07773 10801478
    3 1knd:A (1.9) BS03 CAQ 1.13.11.39 GO:0003824 ... P47228 9857017
    4 1xep:A (1.55) BS01 CAQ 3.2.1.17 GO:0003796 ... P00720 15916423
    5 2buq:A (1.8) BS01 CAQ 1.13.11.3 GO:0003824 ... P20371 15487948
    6 2buq:B (1.8) BS02 CAQ 1.13.11.3 GO:0003824 ... P20372 15487948
    7 2buy:A (1.8) BS01 CAQ 1.13.11.3 GO:0003824 ... P20371 N/A
    8 2buy:B (1.8) BS02 CAQ 1.13.11.3 GO:0003824 ... P20372 N/A
    9 2pum:A (2.7) BS03 CAQ 1.11.1.7 GO:0004601 ... P80025 N/A
    10 3fw4:A (2.3) BS01 CAQ ? GO:0005506 ... P80188 20581821 MOAD: Kd=0.4nM
    PDBbind: -logKd/Ki=9.40, Kd=0.4nM
    11 3fw4:C (2.3) BS01 CAQ ? GO:0005506 ... P80188 20581821 MOAD: Kd=0.4nM
    12 3hhy:A (1.55) BS02 CAQ 1.13.11.1 GO:0003824 ... P95607 20040374 MOAD: Ki=3uM
    13 3hhy:A (1.55) BS03 CAQ 1.13.11.1 GO:0003824 ... P95607 20040374 MOAD: Ki=3uM
    14 3mi5:A (1.78) BS01 CAQ 1.13.11.3 GO:0003824 ... P00436 N/A
    15 3mi5:B (1.78) BS01 CAQ 1.13.11.3 GO:0003824 ... P00436 N/A
    16 3mi5:C (1.78) BS01 CAQ 1.13.11.3 GO:0003824 ... P00436 N/A
    17 3mi5:D (1.78) BS01 CAQ 1.13.11.3 GO:0003824 ... P00436 N/A
    18 3mi5:E (1.78) BS01 CAQ 1.13.11.3 GO:0003824 ... P00436 N/A
    19 3mi5:F (1.78) BS01 CAQ 1.13.11.3 GO:0003824 ... P00436 N/A
    20 3mi5:M (1.78) BS02 CAQ 1.13.11.3 GO:0003824 ... P00437 N/A
    21 3mi5:N (1.78) BS02 CAQ 1.13.11.3 GO:0003824 ... P00437 N/A
    22 3mi5:O (1.78) BS02 CAQ 1.13.11.3 GO:0003824 ... P00437 N/A
    23 3mi5:P (1.78) BS02 CAQ 1.13.11.3 GO:0003824 ... P00437 N/A
    24 3mi5:Q (1.78) BS02 CAQ 1.13.11.3 GO:0003824 ... P00437 N/A
    25 3mi5:R (1.78) BS02 CAQ 1.13.11.3 GO:0003824 ... P00437 N/A
    26 3o4m:A (2.5) BS03 CAQ 3.1.1.4 GO:0002446 ... P00592 21995306
    27 3t67:A (1.67) BS01 CAQ 1.13.11.3 GO:0003824 ... P00436 N/A
    28 3t67:B (1.67) BS01 CAQ 1.13.11.3 GO:0003824 ... P00436 N/A
    29 3t67:C (1.67) BS01 CAQ 1.13.11.3 GO:0003824 ... P00436 N/A
    30 3t67:M (1.67) BS02 CAQ 1.13.11.3 GO:0003824 ... P00437 N/A
    31 3t67:N (1.67) BS02 CAQ 1.13.11.3 GO:0003824 ... P00437 N/A
    32 3t67:O (1.67) BS02 CAQ 1.13.11.3 GO:0003824 ... P00437 N/A
    33 4k7i:A (2.25) BS01 CAQ 1.11.1.24 GO:0008379 ... P30044 25025339 MOAD: Kd=1500uM
    PDBbind: -logKd/Ki=2.82, Kd=1500uM
    34 4k7i:B (2.25) BS01 CAQ 1.11.1.24 GO:0008379 ... P30044 25025339 MOAD: Kd=1500uM
    35 4oow:A (2.57) BS01 CAQ 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 25053847 PDBbind: -logKd/Ki=5.37, IC50=4.3uM
    36 4qon:A (1.8) BS03 CAQ N/A GO:0004096 ... N/A 25663126
    37 4qon:A (1.8) BS04 CAQ N/A GO:0004096 ... N/A 25663126
    38 4qon:B (1.8) BS03 CAQ N/A GO:0004096 ... N/A 25663126
    39 4qon:B (1.8) BS04 CAQ N/A GO:0004096 ... N/A 25663126
    40 4qon:B (1.8) BS05 CAQ N/A GO:0004096 ... N/A 25663126
    41 4qon:C (1.8) BS03 CAQ N/A GO:0004096 ... N/A 25663126
    42 4qon:C (1.8) BS04 CAQ N/A GO:0004096 ... N/A 25663126
    43 4qon:C (1.8) BS05 CAQ N/A GO:0004096 ... N/A 25663126
    44 4qon:D (1.8) BS03 CAQ N/A GO:0004096 ... N/A 25663126
    45 4qon:D (1.8) BS04 CAQ N/A GO:0004096 ... N/A 25663126
    46 4qon:D (1.8) BS05 CAQ N/A GO:0004096 ... N/A 25663126
    47 4zxt:A (2.0) BS01 CAQ 2.7.11.24 GO:0000165 ... P28482 27167001
    48 5kbi:A (2.9) BS02 CAQ ? N/A Q43965 27362503 PDBbind: -logKd/Ki=5.39, Kd=4.12uM
    49 5kbi:B (2.9) BS02 CAQ ? N/A Q43965 27362503
    50 5vxt:A (1.75) BS02 CAQ 1.13.11.1 GO:0003824 ... B1Z4S0 N/A
    51 5vxt:B (1.75) BS02 CAQ 1.13.11.1 GO:0003824 ... B1Z4S0 N/A
    52 7bp1:A (1.97) BS01 CAQ ? GO:0005737 ... N1S495 32421914
    53 7bp1:C (1.97) BS01 CAQ ? GO:0005737 ... N1S495 32421914
    54 7bp1:D (1.97) BS01 CAQ ? GO:0005737 ... N1S495 32421914
    55 7kk0:A (1.5) BS01 CAQ ? GO:0003677 ... C5CSP2 36266335
    56 7wjr:A (2.0) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    57 7wjr:B (2.0) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    58 7wjr:C (2.0) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    59 7wjr:D (2.0) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    60 7wkl:A (1.88) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    61 7wkl:B (1.88) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    62 7wkl:C (1.88) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    63 7wkl:D (1.88) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    64 7wkm:A (1.8) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    65 7wkm:B (1.8) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    66 7wmb:A (2.2) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    67 7wmb:B (2.2) BS02 CAQ 4.1.1.46 GO:0005575 ... P80402 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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