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BioLiP
Download all results in tab-seperated text for 733 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 7qsx:A (2.7) BS01 CAP N/A GO:0000287 ... N/A 36227987
    602 7qsx:A (2.7) BS03 CAP N/A GO:0000287 ... N/A 36227987
    603 7qsx:B (2.7) BS01 CAP N/A GO:0000287 ... N/A 36227987
    604 7qsx:B (2.7) BS03 CAP N/A GO:0000287 ... N/A 36227987
    605 7qsx:C (2.7) BS01 CAP N/A GO:0000287 ... N/A 36227987
    606 7qsx:C (2.7) BS03 CAP N/A GO:0000287 ... N/A 36227987
    607 7qsx:D (2.7) BS01 CAP N/A GO:0000287 ... N/A 36227987
    608 7qsx:D (2.7) BS02 CAP N/A GO:0000287 ... N/A 36227987
    609 7qsx:E (2.7) BS01 CAP N/A GO:0000287 ... N/A 36227987
    610 7qsx:E (2.7) BS02 CAP N/A GO:0000287 ... N/A 36227987
    611 7qsx:F (2.7) BS01 CAP N/A GO:0000287 ... N/A 36227987
    612 7qsx:F (2.7) BS02 CAP N/A GO:0000287 ... N/A 36227987
    613 7qsx:G (2.7) BS01 CAP N/A GO:0000287 ... N/A 36227987
    614 7qsx:H (2.7) BS01 CAP N/A GO:0000287 ... N/A 36227987
    615 7qsx:H (2.7) BS02 CAP N/A GO:0000287 ... N/A 36227987
    616 7qsy:A (2.1) BS01 CAP N/A GO:0000287 ... N/A 36227987
    617 7qsy:C (2.1) BS01 CAP N/A GO:0000287 ... N/A 36227987
    618 7qsy:E (2.1) BS01 CAP N/A GO:0000287 ... N/A 36227987
    619 7qsy:G (2.1) BS01 CAP N/A GO:0000287 ... N/A 36227987
    620 7qsz:A (2.25) BS01 CAP N/A GO:0000287 ... N/A 36227987
    621 7qsz:B (2.25) BS01 CAP N/A GO:0000287 ... N/A 36227987
    622 7qsz:C (2.25) BS01 CAP N/A GO:0000287 ... N/A 36227987
    623 7qsz:D (2.25) BS01 CAP N/A GO:0000287 ... N/A 36227987
    624 7qt1:A (2.1) BS01 CAP N/A GO:0000287 ... N/A 36227987
    625 7qt1:C (2.1) BS01 CAP N/A GO:0000287 ... N/A 36227987
    626 7qt1:E (2.1) BS01 CAP N/A GO:0000287 ... N/A 36227987
    627 7qt1:G (2.1) BS01 CAP N/A GO:0000287 ... N/A 36227987
    628 7qvi:A (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    629 7qvi:A (3.0) BS03 CAP N/A GO:0000287 ... N/A 36227987
    630 7qvi:B (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    631 7qvi:C (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    632 7qvi:D (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    633 7qvi:D (3.0) BS02 CAP N/A GO:0000287 ... N/A 36227987
    634 7qvi:E (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    635 7qvi:E (3.0) BS03 CAP N/A GO:0000287 ... N/A 36227987
    636 7qvi:F (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    637 7qvi:G (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    638 7qvi:H (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    639 7qvi:H (3.0) BS02 CAP N/A GO:0000287 ... N/A 36227987
    640 7qvi:I (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    641 7qvi:I (3.0) BS03 CAP N/A GO:0000287 ... N/A 36227987
    642 7qvi:J (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    643 7qvi:K (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    644 7qvi:L (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    645 7qvi:M (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    646 7qvi:M (3.0) BS03 CAP N/A GO:0000287 ... N/A 36227987
    647 7qvi:N (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    648 7qvi:N (3.0) BS02 CAP N/A GO:0000287 ... N/A 36227987
    649 7qvi:O (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    650 7qvi:P (3.0) BS01 CAP N/A GO:0000287 ... N/A 36227987
    651 7qvi:P (3.0) BS02 CAP N/A GO:0000287 ... N/A 36227987
    652 7t1j:A (1.96) BS01 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    653 7t1j:A (1.96) BS03 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    654 7t1j:B (1.96) BS01 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    655 7t1j:B (1.96) BS02 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    656 7t1j:C (1.96) BS01 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    657 7t1j:C (1.96) BS03 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    658 7t1j:D (1.96) BS01 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    659 7t1j:D (1.96) BS02 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    660 7t1j:E (1.96) BS01 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    661 7t1j:E (1.96) BS03 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    662 7t1j:F (1.96) BS01 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    663 7t1j:F (1.96) BS02 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    664 7t1j:G (1.96) BS01 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    665 7t1j:G (1.96) BS03 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    666 7t1j:H (1.96) BS01 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    667 7t1j:H (1.96) BS02 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    668 7t1j:I (1.96) BS01 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    669 7t1j:I (1.96) BS03 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    670 7t1j:J (1.96) BS01 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    671 7t1j:J (1.96) BS02 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    672 7t1j:K (1.96) BS01 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    673 7t1j:K (1.96) BS03 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    674 7t1j:L (1.96) BS01 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    675 7t1j:L (1.96) BS02 CAP 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    676 7yk5:A (2.0) BS02 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    677 7yk5:A (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    678 7yk5:B (2.0) BS02 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    679 7yk5:B (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    680 7yk5:C (2.0) BS02 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    681 7yk5:C (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    682 7yk5:D (2.0) BS02 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    683 7yk5:D (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    684 7yk5:E (2.0) BS02 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    685 7yk5:E (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    686 7yk5:F (2.0) BS02 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    687 7yk5:F (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    688 7yk5:G (2.0) BS02 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    689 7yk5:H (2.0) BS02 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    690 7yk5:H (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... Q9TK52 37311001
    691 7yyo:A (2.87) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    692 7yyo:C (2.87) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    693 7yyo:E (2.87) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    694 7yyo:G (2.87) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    695 7yyo:I (2.87) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    696 7yyo:K (2.87) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    697 7yyo:M (2.87) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    698 7yyo:O (2.87) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    699 8bdb:A (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    700 8bdb:C (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    701 8bdb:E (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    702 8bdb:G (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    703 8bdb:I (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    704 8bdb:K (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    705 8bdb:M (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    706 8bdb:O (1.7) BS02 CAP 4.1.1.39 GO:0000287 ... A7UM67 37291398
    707 8cmy:C (3.79) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    708 8cmy:G (3.79) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    709 8cmy:I (3.79) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    710 8cmy:K (3.79) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    711 8cmy:M (3.79) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    712 8cmy:M (3.79) BS02 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    713 8cmy:O (3.79) BS01 CAP 4.1.1.39 GO:0000287 ... A5CKD0 37015227
    714 8ruc:A (1.6) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 8648644
    715 8ruc:C (1.6) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 8648644
    716 8ruc:E (1.6) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 8648644
    717 8ruc:G (1.6) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 8648644
    718 8u66:A (2.21) BS02 CAP N/A GO:0000287 ... N/A 37979578
    719 8u66:A (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    720 8u66:B (2.21) BS01 CAP N/A GO:0000287 ... N/A 37979578
    721 8u66:B (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    722 8u66:C (2.21) BS02 CAP N/A GO:0000287 ... N/A 37979578
    723 8u66:C (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    724 8u66:D (2.21) BS01 CAP N/A GO:0000287 ... N/A 37979578
    725 8u66:D (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    726 8u66:E (2.21) BS02 CAP N/A GO:0000287 ... N/A 37979578
    727 8u66:E (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    728 8u66:F (2.21) BS01 CAP N/A GO:0000287 ... N/A 37979578
    729 8u66:F (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    730 8u66:G (2.21) BS02 CAP N/A GO:0000287 ... N/A 37979578
    731 8u66:G (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    732 8u66:H (2.21) BS01 CAP N/A GO:0000287 ... N/A 37979578
    733 8u66:H (2.21) BS03 CAP N/A GO:0000287 ... N/A 37979578
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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