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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1beh:A (1.75) BS01 CAC ? GO:0003723 ... P30086 9782050
    2 1beh:B (1.75) BS01 CAC ? GO:0003723 ... P30086 9782050
    3 1biz:A (1.95) BS01 CAC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 9689049
    4 1biz:B (1.95) BS01 CAC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 9689049
    5 1qh3:A (1.9) BS03 CAC 3.1.2.6 GO:0004416 ... Q16775 10508780
    6 1qh3:B (1.9) BS03 CAC 3.1.2.6 GO:0004416 ... Q16775 10508780
    7 1qh3:B (1.9) BS05 CAC 3.1.2.6 GO:0004416 ... Q16775 10508780
    8 1wmb:A (2.0) BS01 CAC 1.1.1.30 GO:0000166 ... Q5KST5 16325199
    9 1wmb:B (2.0) BS01 CAC 1.1.1.30 GO:0000166 ... Q5KST5 16325199
    10 1wn5:A (1.8) BS02 CAC 3.5.4.23 GO:0003824 ... P0C2P0 17959604
    11 1wn5:B (1.8) BS02 CAC 3.5.4.23 GO:0003824 ... P0C2P0 17959604
    12 1wn5:C (1.8) BS02 CAC 3.5.4.23 GO:0003824 ... P0C2P0 17959604
    13 1wn5:D (1.8) BS02 CAC 3.5.4.23 GO:0003824 ... P0C2P0 17959604
    14 1x1t:A (1.52) BS01 CAC 1.1.1.30 GO:0000166 ... Q5KST5 16325199
    15 1y9a:A (1.81) BS02 CAC 1.1.1.80 GO:0005737 ... P35630 16627948
    16 1y9a:C (1.81) BS02 CAC 1.1.1.80 GO:0005737 ... P35630 16627948
    17 1yhc:A (2.1) BS04 CAC 3.5.1.108 GO:0006796 ... O67648 15705580
    18 1yhc:B (2.1) BS03 CAC 3.5.1.108 GO:0006796 ... O67648 15705580
    19 2acr:A (1.76) BS01 CAC 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 8117658
    20 2bvt:A (2.9) BS03 CAC 3.2.1.78 GO:0004553 ... Q9XCV5 16171384
    21 2bvt:B (2.9) BS03 CAC 3.2.1.78 GO:0004553 ... Q9XCV5 16171384
    22 2bvy:A (2.25) BS01 CAC 3.2.1.78 GO:0004553 ... Q9XCV5 16171384
    23 2hyp:A (2.05) BS03 CAC 3.1.4.16
    3.1.4.17    		 GO:0004112 ... P9WP65 17059828
    24 2o4q:A (1.95) BS03 CAC 3.1.8.1 GO:0004063 ... P0A434 18702530
    25 2o4q:B (1.95) BS03 CAC 3.1.8.1 GO:0004063 ... P0A434 18702530
    26 2o4q:K (1.95) BS03 CAC 3.1.8.1 GO:0004063 ... P0A434 18702530
    27 2o4q:P (1.95) BS03 CAC 3.1.8.1 GO:0004063 ... P0A434 18702530
    28 2z3i:A (1.8) BS03 CAC 3.5.4.23 GO:0003824 ... P0C2P0 17959604
    29 2z3i:B (1.8) BS04 CAC 3.5.4.23 GO:0003824 ... P0C2P0 17959604
    30 2z3i:C (1.8) BS03 CAC 3.5.4.23 GO:0003824 ... P0C2P0 17959604
    31 2z3i:D (1.8) BS04 CAC 3.5.4.23 GO:0003824 ... P0C2P0 17959604
    32 2z3j:A (1.6) BS02 CAC 3.5.4.23 GO:0003824 ... P0C2P0 17959604
    33 2z3j:B (1.6) BS02 CAC 3.5.4.23 GO:0003824 ... P0C2P0 17959604
    34 2z3j:C (1.6) BS02 CAC 3.5.4.23 GO:0003824 ... P0C2P0 17959604
    35 2z3j:D (1.6) BS02 CAC 3.5.4.23 GO:0003824 ... P0C2P0 17959604
    36 3cs2:A (1.95) BS01 CAC 3.1.8.1 GO:0004063 ... P0A434 18702530
    37 3cs2:B (1.95) BS01 CAC 3.1.8.1 GO:0004063 ... P0A434 18702530
    38 3cs2:K (1.95) BS01 CAC 3.1.8.1 GO:0004063 ... P0A434 18702530
    39 3cs2:P (1.95) BS01 CAC 3.1.8.1 GO:0004063 ... P0A434 18702530
    40 3erp:A (1.55) BS01 CAC ? GO:0000166 ... Q8ZNA1 28130301
    41 3erp:B (1.55) BS01 CAC ? GO:0000166 ... Q8ZNA1 28130301
    42 3s70:A (1.625) BS02 CAC 3.4.22.59 GO:0002218 ... P55212 21912678
    43 3s70:A (1.625) BS03 CAC 3.4.22.59 GO:0002218 ... P55212 21912678
    44 3s70:A (1.625) BS04 CAC 3.4.22.59 GO:0002218 ... P55212 21912678
    45 3s70:C (1.625) BS02 CAC 3.4.22.59 GO:0002218 ... P55212 21912678
    46 3s70:C (1.625) BS03 CAC 3.4.22.59 GO:0002218 ... P55212 21912678
    47 4d7l:A (1.895) BS01 CAC 1.8.4.11 GO:0005737 ... Q6NEL2 25752606
    48 4d7l:B (1.895) BS01 CAC 1.8.4.11 GO:0005737 ... Q6NEL2 25752606
    49 4d7l:C (1.895) BS01 CAC 1.8.4.11 GO:0005737 ... Q6NEL2 25752606
    50 5hlo:A (2.1) BS03 CAC ? GO:0002523 ... P05109 27251136
    51 5hlo:B (2.1) BS04 CAC ? GO:0002523 ... P05109 27251136
    52 5hlo:C (2.1) BS01 CAC ? GO:0002523 ... P05109 27251136
    53 5hlo:D (2.1) BS02 CAC ? GO:0002523 ... P05109 27251136
    54 5xtu:A (1.38) BS01 CAC ? GO:0005576 ... A0A0K0PV22 30102982
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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