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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 899 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 5mdr:C (1.9) BS01 C8E ? GO:0006811 ... L0RVU0 29335469
    602 5mdr:D (1.9) BS01 C8E ? GO:0006811 ... L0RVU0 29335469
    603 5mdr:D (1.9) BS02 C8E ? GO:0006811 ... L0RVU0 29335469
    604 5mdr:E (1.9) BS01 C8E ? GO:0006811 ... L0RVU0 29335469
    605 5nuo:A (3.2) BS01 C8E ? GO:0001530 ... P02931 29038444
    606 5nuo:A (3.2) BS02 C8E ? GO:0001530 ... P02931 29038444
    607 5nuo:A (3.2) BS03 C8E ? GO:0001530 ... P02931 29038444
    608 5nuo:A (3.2) BS04 C8E ? GO:0001530 ... P02931 29038444
    609 5nuo:B (3.2) BS01 C8E ? GO:0016020 ... A0A0W8AQT6 29038444
    610 5nuo:C (3.2) BS01 C8E ? GO:0001530 ... P02931 29038444
    611 5nuo:C (3.2) BS02 C8E ? GO:0001530 ... P02931 29038444
    612 5nuo:C (3.2) BS03 C8E ? GO:0001530 ... P02931 29038444
    613 5nuo:D (3.2) BS01 C8E ? GO:0016020 ... A0A0W8AQT6 29038444
    614 5nuo:D (3.2) BS02 C8E ? GO:0016020 ... A0A0W8AQT6 29038444
    615 5nuo:D (3.2) BS03 C8E ? GO:0016020 ... A0A0W8AQT6 29038444
    616 5nuo:D (3.2) BS04 C8E ? GO:0016020 ... A0A0W8AQT6 29038444
    617 5nuo:E (3.2) BS01 C8E ? GO:0001530 ... P02931 29038444
    618 5nuo:E (3.2) BS02 C8E ? GO:0001530 ... P02931 29038444
    619 5nuo:F (3.2) BS01 C8E ? GO:0016020 ... A0A0W8AQT6 29038444
    620 5nuo:F (3.2) BS02 C8E ? GO:0016020 ... A0A0W8AQT6 29038444
    621 5nup:A (2.9) BS01 C8E ? GO:0006811 ... F2VN85 29038444
    622 5nup:A (2.9) BS02 C8E ? GO:0006811 ... F2VN85 29038444
    623 5nup:A (2.9) BS03 C8E ? GO:0006811 ... F2VN85 29038444
    624 5nup:B (2.9) BS01 C8E ? GO:0006811 ... F2VN85 29038444
    625 5nup:B (2.9) BS02 C8E ? GO:0006811 ... F2VN85 29038444
    626 5nup:B (2.9) BS03 C8E ? GO:0006811 ... F2VN85 29038444
    627 5nup:B (2.9) BS04 C8E ? GO:0006811 ... F2VN85 29038444
    628 5nup:C (2.9) BS01 C8E ? GO:0006811 ... F2VN85 29038444
    629 5nup:E (2.9) BS01 C8E ? GO:0016020 ... A0A0W8AQT6 29038444
    630 5nuq:A (3.2) BS01 C8E ? GO:0001530 ... P02931 29038444
    631 5nuq:B (3.2) BS01 C8E ? GO:0001530 ... P02931 29038444
    632 5nuq:D (3.2) BS01 C8E ? GO:0001530 ... P02931 29038444
    633 5nuq:F (3.2) BS01 C8E ? GO:0001530 ... P02931 29038444
    634 5nur:A (3.29) BS01 C8E ? GO:0001530 ... P02931 29038444
    635 5nur:A (3.29) BS02 C8E ? GO:0001530 ... P02931 29038444
    636 5nur:C (3.29) BS02 C8E ? GO:0001530 ... P02931 29038444
    637 5nur:D (3.29) BS01 C8E ? GO:0016020 ... A0A0W8AQT6 29038444
    638 5nur:E (3.29) BS02 C8E ? GO:0001530 ... P02931 29038444
    639 5o65:A (2.5) BS01 C8E N/A N/A N/A 28811582
    640 5o65:C (2.5) BS01 C8E N/A N/A N/A 28811582
    641 5o68:A (3.08) BS01 C8E N/A N/A N/A 28811582
    642 5o68:C (3.08) BS01 C8E N/A N/A N/A 28811582
    643 5o77:A (1.5) BS01 C8E ? GO:0009279 ... A0A1P8FCM7 29962203
    644 5o77:A (1.5) BS02 C8E ? GO:0009279 ... A0A1P8FCM7 29962203
    645 5o79:C (1.65) BS01 C8E ? GO:0006811 ... D6QLY0 29962203
    646 5o9c:A (2.469) BS01 C8E ? GO:0006811 ... Q9ALY0 N/A
    647 5o9c:B (2.469) BS01 C8E ? GO:0006811 ... Q9ALY0 N/A
    648 5o9c:B (2.469) BS02 C8E ? GO:0006811 ... Q9ALY0 N/A
    649 5o9c:D (2.469) BS01 C8E ? GO:0006811 ... Q9ALY0 N/A
    650 5onu:A (2.22) BS01 C8E ? GO:0015288 ... P0C6Q6 29372896
    651 5onu:B (2.22) BS01 C8E ? GO:0015288 ... P0C6Q6 29372896
    652 5onu:C (2.22) BS01 C8E ? GO:0015288 ... P0C6Q6 29372896
    653 5prn:A (2.0) BS01 C8E ? GO:0006811 ... P39767 9684893
    654 5prn:A (2.0) BS02 C8E ? GO:0006811 ... P39767 9684893
    655 5syt:A (2.0) BS01 C8E 3.4.24.84 GO:0001889 ... O75844 27774687
    656 5syt:A (2.0) BS02 C8E 3.4.24.84 GO:0001889 ... O75844 27774687
    657 5syt:A (2.0) BS03 C8E 3.4.24.84 GO:0001889 ... O75844 27774687
    658 5syt:A (2.0) BS04 C8E 3.4.24.84 GO:0001889 ... O75844 27774687
    659 5syt:A (2.0) BS05 C8E 3.4.24.84 GO:0001889 ... O75844 27774687
    660 5syt:A (2.0) BS06 C8E 3.4.24.84 GO:0001889 ... O75844 27774687
    661 5syt:A (2.0) BS07 C8E 3.4.24.84 GO:0001889 ... O75844 27774687
    662 6bh8:A (3.85) BS03 C8E 3.4.24.84 GO:0001889 ... O75844 30082509
    663 6bh8:B (3.85) BS03 C8E 3.4.24.84 GO:0001889 ... O75844 30082509
    664 6ehb:B (1.55) BS01 C8E ? GO:0006811 ... A5F934 29657131
    665 6ehb:B (1.55) BS02 C8E ? GO:0006811 ... A5F934 29657131
    666 6ehb:B (1.55) BS03 C8E ? GO:0006811 ... A5F934 29657131
    667 6ehb:C (1.55) BS01 C8E ? GO:0006811 ... A5F934 29657131
    668 6ehb:C (1.55) BS02 C8E ? GO:0006811 ... A5F934 29657131
    669 6ehb:C (1.55) BS03 C8E ? GO:0006811 ... A5F934 29657131
    670 6ehb:C (1.55) BS04 C8E ? GO:0006811 ... A5F934 29657131
    671 6ehb:C (1.55) BS05 C8E ? GO:0006811 ... A5F934 29657131
    672 6ehc:A (2.02) BS01 C8E ? GO:0006811 ... A5F934 29657131
    673 6ehc:B (2.02) BS01 C8E ? GO:0006811 ... A5F934 29657131
    674 6ehd:A (1.66) BS01 C8E ? GO:0006811 ... A0A0H3AME7 29657131
    675 6ehd:A (1.66) BS02 C8E ? GO:0006811 ... A0A0H3AME7 29657131
    676 6ehd:A (1.66) BS03 C8E ? GO:0006811 ... A0A0H3AME7 29657131
    677 6ehd:A (1.66) BS04 C8E ? GO:0006811 ... A0A0H3AME7 29657131
    678 6ehd:A (1.66) BS05 C8E ? GO:0006811 ... A0A0H3AME7 29657131
    679 6ehe:A (2.312) BS01 C8E ? GO:0006811 ... A0A0H3AME7 29657131
    680 6ehe:A (2.312) BS02 C8E ? GO:0006811 ... A0A0H3AME7 29657131
    681 6ehe:A (2.312) BS03 C8E ? GO:0006811 ... A0A0H3AME7 29657131
    682 6ehe:A (2.312) BS04 C8E ? GO:0006811 ... A0A0H3AME7 29657131
    683 6ene:A (2.3) BS01 C8E ? GO:0006811 ... A0A0M7H8A9 29962203
    684 6ene:A (2.3) BS02 C8E ? GO:0006811 ... A0A0M7H8A9 29962203
    685 6ene:B (2.3) BS01 C8E ? GO:0006811 ... A0A0M7H8A9 29962203
    686 6ene:C (2.3) BS01 C8E ? GO:0006811 ... A0A0M7H8A9 29962203
    687 6fok:A (1.97) BS02 C8E ? GO:0005515 ... G3XD89 34762655
    688 6fok:A (1.97) BS03 C8E ? GO:0005515 ... G3XD89 34762655
    689 6fok:A (1.97) BS04 C8E ? GO:0005515 ... G3XD89 34762655
    690 6fok:B (1.97) BS01 C8E ? GO:0005515 ... G3XD89 34762655
    691 6fok:B (1.97) BS03 C8E ? GO:0005515 ... G3XD89 34762655
    692 6fok:B (1.97) BS04 C8E ? GO:0005515 ... G3XD89 34762655
    693 6fok:B (1.97) BS05 C8E ? GO:0005515 ... G3XD89 34762655
    694 6fom:A (2.9) BS01 C8E ? GO:0005515 ... G3XD89 34762655
    695 6fom:A (2.9) BS02 C8E ? GO:0005515 ... G3XD89 34762655
    696 6fom:B (2.9) BS01 C8E ? GO:0005515 ... G3XD89 34762655
    697 6fom:B (2.9) BS02 C8E ? GO:0005515 ... G3XD89 34762655
    698 6gie:A (2.1) BS01 C8E ? N/A A0A081GU02 30198896
    699 6gie:A (2.1) BS02 C8E ? N/A A0A081GU02 30198896
    700 6gie:A (2.1) BS03 C8E ? N/A A0A081GU02 30198896
    701 6h7f:A (2.26) BS04 C8E ? GO:0006826 ... Q76HJ9 30558715
    702 6h7f:A (2.26) BS05 C8E ? GO:0006826 ... Q76HJ9 30558715
    703 6h7f:B (2.26) BS03 C8E ? GO:0006826 ... Q76HJ9 30558715
    704 6h7f:B (2.26) BS04 C8E ? GO:0006826 ... Q76HJ9 30558715
    705 6h7f:B (2.26) BS05 C8E ? GO:0006826 ... Q76HJ9 30558715
    706 6h7f:B (2.26) BS06 C8E ? GO:0006826 ... Q76HJ9 30558715
    707 6h7f:B (2.26) BS07 C8E ? GO:0006826 ... Q76HJ9 30558715
    708 6h7f:B (2.26) BS08 C8E ? GO:0006826 ... Q76HJ9 30558715
    709 6h7f:C (2.26) BS03 C8E ? GO:0006826 ... Q76HJ9 30558715
    710 6h7f:C (2.26) BS04 C8E ? GO:0006826 ... Q76HJ9 30558715
    711 6h7f:C (2.26) BS05 C8E ? GO:0006826 ... Q76HJ9 30558715
    712 6h7f:C (2.26) BS06 C8E ? GO:0006826 ... Q76HJ9 30558715
    713 6h7f:C (2.26) BS07 C8E ? GO:0006826 ... Q76HJ9 30558715
    714 6h7v:B (2.54) BS01 C8E ? GO:0006826 ... D0CC21 30558715
    715 6hcp:A (1.83) BS01 C8E ? GO:0006826 ... Q76HJ9 30558715
    716 6hcp:A (1.83) BS02 C8E ? GO:0006826 ... Q76HJ9 30558715
    717 6hcp:A (1.83) BS03 C8E ? GO:0006826 ... Q76HJ9 30558715
    718 6hcp:A (1.83) BS04 C8E ? GO:0006826 ... Q76HJ9 30558715
    719 6hcp:B (1.83) BS01 C8E ? GO:0006826 ... Q76HJ9 30558715
    720 6hcp:B (1.83) BS02 C8E ? GO:0006826 ... Q76HJ9 30558715
    721 6hcp:B (1.83) BS03 C8E ? GO:0006826 ... Q76HJ9 30558715
    722 6hcp:B (1.83) BS04 C8E ? GO:0006826 ... Q76HJ9 30558715
    723 6hcp:B (1.83) BS05 C8E ? GO:0006826 ... Q76HJ9 30558715
    724 6hcp:C (1.83) BS01 C8E ? GO:0006826 ... Q76HJ9 30558715
    725 6hcp:C (1.83) BS02 C8E ? GO:0006826 ... Q76HJ9 30558715
    726 6hcp:C (1.83) BS03 C8E ? GO:0006826 ... Q76HJ9 30558715
    727 6hcp:C (1.83) BS04 C8E ? GO:0006826 ... Q76HJ9 30558715
    728 6hcp:C (1.83) BS05 C8E ? GO:0006826 ... Q76HJ9 30558715
    729 6hcp:C (1.83) BS06 C8E ? GO:0006826 ... Q76HJ9 30558715
    730 6hcp:C (1.83) BS07 C8E ? GO:0006826 ... Q76HJ9 30558715
    731 6i98:A (2.8) BS01 C8E ? GO:0009279 ... Q9I116 31385808
    732 6prn:A (2.04) BS01 C8E ? GO:0006811 ... P39767 9684893
    733 6prn:A (2.04) BS02 C8E ? GO:0006811 ... P39767 9684893
    734 6qgw:A (1.938) BS01 C8E ? GO:0019867 ... P0A940 31073665
    735 6qgw:A (1.938) BS02 C8E ? GO:0019867 ... P0A940 31073665
    736 6qgx:A (2.2) BS01 C8E ? GO:0019867 ... P0A940 31073665
    737 6qgy:C (2.509) BS01 C8E ? GO:0019867 ... P0A940 31073665
    738 6qgy:C (2.509) BS02 C8E ? GO:0019867 ... P0A940 31073665
    739 6qgy:D (2.509) BS01 C8E N/A N/A N/A 31073665
    740 6rck:C (2.029) BS01 C8E ? GO:0006811 ... D6QLY1 31477712
    741 6rck:C (2.029) BS02 C8E ? GO:0006811 ... D6QLY1 31477712
    742 6rck:C (2.029) BS04 C8E ? GO:0006811 ... D6QLY1 31477712
    743 6rck:C (2.029) BS05 C8E ? GO:0006811 ... D6QLY1 31477712
    744 6rd3:A (1.98) BS01 C8E ? GO:0006811 ... D6QLY0 31477712
    745 6rd3:A (1.98) BS02 C8E ? GO:0006811 ... D6QLY0 31477712
    746 6rd3:A (1.98) BS03 C8E ? GO:0006811 ... D6QLY0 31477712
    747 6rd3:A (1.98) BS04 C8E ? GO:0006811 ... D6QLY0 31477712
    748 6rd3:B (1.98) BS01 C8E ? GO:0006811 ... D6QLY0 31477712
    749 6rd3:D (1.98) BS02 C8E ? GO:0006811 ... D6QLY0 31477712
    750 6rd3:D (1.98) BS03 C8E ? GO:0006811 ... D6QLY0 31477712
    751 6rd3:E (1.98) BS01 C8E ? GO:0006811 ... D6QLY0 31477712
    752 6rd3:E (1.98) BS02 C8E ? GO:0006811 ... D6QLY0 31477712
    753 6rd3:E (1.98) BS04 C8E ? GO:0006811 ... D6QLY0 31477712
    754 6rd3:F (1.98) BS01 C8E ? GO:0006811 ... D6QLY0 31477712
    755 6sli:B (3.38) BS03 C8E ? GO:0009279 ... Q7MXJ7 32393857
    756 6slj:A (3.04) BS02 C8E ? GO:0009279 ... Q7MXJ7 32393857
    757 6slj:B (3.04) BS02 C8E ? GO:0009279 ... Q7MXJ7 32393857
    758 6slj:B (3.04) BS03 C8E ? GO:0009279 ... Q7MXJ7 32393857
    759 6sln:A (2.61) BS02 C8E ? GO:0009279 ... Q7MXJ7 32393857
    760 6sln:A (2.61) BS03 C8E ? GO:0009279 ... Q7MXJ7 32393857
    761 6sln:B (2.61) BS02 C8E ? GO:0009279 ... Q7MXJ7 32393857
    762 6sln:B (2.61) BS03 C8E ? GO:0009279 ... Q7MXJ7 32393857
    763 6smq:E (3.3) BS02 C8E ? GO:0009279 ... Q7MXJ7 32393857
    764 6tzk:A (1.852) BS01 C8E ? GO:0019867 ... P37650 31604608
    765 6uxq:A (1.696) BS01 C8E ? GO:0042981 ... Q16611 32929280
    766 6uxq:A (1.696) BS02 C8E ? GO:0042981 ... Q16611 32929280
    767 6uxq:A (1.696) BS03 C8E ? GO:0042981 ... Q16611 32929280
    768 6uxq:B (1.696) BS01 C8E ? GO:0042981 ... Q16611 32929280
    769 6uxq:B (1.696) BS03 C8E ? GO:0042981 ... Q16611 32929280
    770 6uxq:C (1.696) BS01 C8E ? GO:0042981 ... Q16611 32929280
    771 6uxq:C (1.696) BS02 C8E ? GO:0042981 ... Q16611 32929280
    772 6uxq:D (1.696) BS01 C8E ? GO:0042981 ... Q16611 32929280
    773 6uxq:D (1.696) BS02 C8E ? GO:0042981 ... Q16611 32929280
    774 6uxq:D (1.696) BS03 C8E ? GO:0042981 ... Q16611 32929280
    775 6uxq:D (1.696) BS04 C8E ? GO:0042981 ... Q16611 32929280
    776 6wil:A (2.4) BS01 C8E N/A GO:0015031 ... N/A 33089781
    777 6zaz:B (2.69) BS05 C8E ? N/A Q8A6W3 33398001
    778 6zaz:B (2.69) BS06 C8E ? N/A Q8A6W3 33398001
    779 7acg:A (1.85) BS07 C8E ? GO:0009279 ... P18895 N/A
    780 7eqm:A (2.50002) BS01 C8E ? GO:0006811 ... L0RVU0 37394001
    781 7eqr:A (2.75003) BS01 C8E ? GO:0006811 ... L0RVU0 37394001
    782 7eqr:A (2.75003) BS02 C8E ? GO:0006811 ... L0RVU0 37394001
    783 7eqr:B (2.75003) BS01 C8E ? GO:0006811 ... L0RVU0 37394001
    784 7eqr:C (2.75003) BS01 C8E ? GO:0006811 ... L0RVU0 37394001
    785 7eqr:C (2.75003) BS02 C8E ? GO:0006811 ... L0RVU0 37394001
    786 7eqr:C (2.75003) BS03 C8E ? GO:0006811 ... L0RVU0 37394001
    787 7eqr:D (2.75003) BS01 C8E ? GO:0006811 ... L0RVU0 37394001
    788 7eqr:E (2.75003) BS01 C8E ? GO:0006811 ... L0RVU0 37394001
    789 7eqr:E (2.75003) BS02 C8E ? GO:0006811 ... L0RVU0 37394001
    790 7eqr:F (2.75003) BS01 C8E ? GO:0006811 ... L0RVU0 37394001
    791 7nre:A (2.3) BS02 C8E ? GO:0019867 ... P0A940 33854236
    792 7nre:A (2.3) BS03 C8E ? GO:0019867 ... P0A940 33854236
    793 7nrf:A (2.2) BS02 C8E ? GO:0019867 ... P0A940 33854236
    794 7nrf:A (2.2) BS03 C8E ? GO:0019867 ... P0A940 33854236
    795 7nrf:A (2.2) BS04 C8E ? GO:0019867 ... P0A940 33854236
    796 7nrf:A (2.2) BS05 C8E ? GO:0019867 ... P0A940 33854236
    797 7p1c:A (2.5) BS02 C8E ? GO:0019867 ... P0A940 34937193
    798 7p1c:A (2.5) BS03 C8E ? GO:0019867 ... P0A940 34937193
    799 7pge:B (2.0) BS01 C8E ? GO:0005507 ... Q47453 35762724
    800 7prn:A (2.25) BS01 C8E ? GO:0006811 ... P39767 9684893
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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