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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 899 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 3brz:A (3.2) BS01 C8E ? GO:0015483 ... A5W4F4 18559855
    202 3brz:A (3.2) BS02 C8E ? GO:0015483 ... A5W4F4 18559855
    203 3brz:A (3.2) BS03 C8E ? GO:0015483 ... A5W4F4 18559855
    204 3brz:A (3.2) BS04 C8E ? GO:0015483 ... A5W4F4 18559855
    205 3bs0:A (2.6) BS01 C8E ? GO:0015483 ... A5W4F4 18559855
    206 3bs0:A (2.6) BS02 C8E ? GO:0015483 ... A5W4F4 18559855
    207 3bs0:B (2.6) BS01 C8E ? GO:0015483 ... A5W4F4 18559855
    208 3bs0:B (2.6) BS02 C8E ? GO:0015483 ... A5W4F4 18559855
    209 3c9l:A (2.646) BS03 C8E ? GO:0000139 ... P02699 18645239
    210 3c9l:A (2.646) BS04 C8E ? GO:0000139 ... P02699 18645239
    211 3c9l:A (2.646) BS05 C8E ? GO:0000139 ... P02699 18645239
    212 3dwo:X (2.2) BS01 C8E ? GO:0015483 ... Q9HVJ6 19182779
    213 3dwo:X (2.2) BS02 C8E ? GO:0015483 ... Q9HVJ6 19182779
    214 3dwo:X (2.2) BS03 C8E ? GO:0015483 ... Q9HVJ6 19182779
    215 3dwo:X (2.2) BS04 C8E ? GO:0015483 ... Q9HVJ6 19182779
    216 3dwo:X (2.2) BS05 C8E ? GO:0015483 ... Q9HVJ6 19182779
    217 3dwo:X (2.2) BS06 C8E ? GO:0015483 ... Q9HVJ6 19182779
    218 3dzm:A (2.801) BS02 C8E ? GO:0046872 ... Q72JD8 19101566
    219 3dzm:A (2.801) BS03 C8E ? GO:0046872 ... Q72JD8 19101566
    220 3dzm:B (2.801) BS02 C8E ? GO:0046872 ... Q72JD8 19101566
    221 3dzm:B (2.801) BS03 C8E ? GO:0046872 ... Q72JD8 19101566
    222 3dzm:C (2.801) BS02 C8E ? GO:0046872 ... Q72JD8 19101566
    223 3dzm:C (2.801) BS03 C8E ? GO:0046872 ... Q72JD8 19101566
    224 3kvn:A (2.499) BS01 C8E 3.1.1.1 GO:0006629 ... O33407 20060837
    225 3kvn:A (2.499) BS02 C8E 3.1.1.1 GO:0006629 ... O33407 20060837
    226 3kvn:X (2.499) BS01 C8E 3.1.1.1 GO:0006629 ... O33407 20060837
    227 3kvn:X (2.499) BS02 C8E 3.1.1.1 GO:0006629 ... O33407 20060837
    228 3m8b:A (2.44) BS01 C8E ? GO:0005509 ... P06129 20816073
    229 3m8b:A (2.44) BS02 C8E ? GO:0005509 ... P06129 20816073
    230 3m8b:A (2.44) BS03 C8E ? GO:0005509 ... P06129 20816073
    231 3m8b:A (2.44) BS04 C8E ? GO:0005509 ... P06129 20816073
    232 3m8d:A (2.44) BS02 C8E ? GO:0005509 ... P06129 20816073
    233 3m8d:A (2.44) BS03 C8E ? GO:0005509 ... P06129 20816073
    234 3m8d:A (2.44) BS04 C8E ? GO:0005509 ... P06129 20816073
    235 3m8d:A (2.44) BS05 C8E ? GO:0005509 ... P06129 20816073
    236 3pf1:A (2.7) BS01 C8E ? GO:0006869 ... P10384 21593406
    237 3pf1:A (2.7) BS02 C8E ? GO:0006869 ... P10384 21593406
    238 3pf1:A (2.7) BS03 C8E ? GO:0006869 ... P10384 21593406
    239 3pf1:A (2.7) BS04 C8E ? GO:0006869 ... P10384 21593406
    240 3pf1:B (2.7) BS01 C8E ? GO:0006869 ... P10384 21593406
    241 3pf1:B (2.7) BS02 C8E ? GO:0006869 ... P10384 21593406
    242 3pf1:B (2.7) BS03 C8E ? GO:0006869 ... P10384 21593406
    243 3pgr:A (2.6) BS01 C8E ? GO:0006869 ... P10384 21593406
    244 3pgr:A (2.6) BS02 C8E ? GO:0006869 ... P10384 21593406
    245 3pgr:A (2.6) BS03 C8E ? GO:0006869 ... P10384 21593406
    246 3pgr:A (2.6) BS04 C8E ? GO:0006869 ... P10384 21593406
    247 3pgs:A (1.9) BS02 C8E ? GO:0006869 ... P10384 21593406
    248 3pgs:A (1.9) BS03 C8E ? GO:0006869 ... P10384 21593406
    249 3pgs:A (1.9) BS04 C8E ? GO:0006869 ... P10384 21593406
    250 3pgs:A (1.9) BS05 C8E ? GO:0006869 ... P10384 21593406
    251 3pgs:A (1.9) BS06 C8E ? GO:0006869 ... P10384 21593406
    252 3pgs:A (1.9) BS07 C8E ? GO:0006869 ... P10384 21593406
    253 3pgs:B (1.9) BS01 C8E ? GO:0006869 ... P10384 21593406
    254 3pgs:B (1.9) BS02 C8E ? GO:0006869 ... P10384 21593406
    255 3pgs:B (1.9) BS03 C8E ? GO:0006869 ... P10384 21593406
    256 3pgs:B (1.9) BS04 C8E ? GO:0006869 ... P10384 21593406
    257 3pgs:B (1.9) BS05 C8E ? GO:0006869 ... P10384 21593406
    258 3pgs:B (1.9) BS06 C8E ? GO:0006869 ... P10384 21593406
    259 3pgu:A (1.7) BS01 C8E ? GO:0006869 ... P10384 21593406
    260 3pgu:A (1.7) BS02 C8E ? GO:0006869 ... P10384 21593406
    261 3pgu:A (1.7) BS03 C8E ? GO:0006869 ... P10384 21593406
    262 3pgu:A (1.7) BS04 C8E ? GO:0006869 ... P10384 21593406
    263 3pgu:A (1.7) BS05 C8E ? GO:0006869 ... P10384 21593406
    264 3pgu:A (1.7) BS06 C8E ? GO:0006869 ... P10384 21593406
    265 3pgu:A (1.7) BS07 C8E ? GO:0006869 ... P10384 21593406
    266 3pgu:A (1.7) BS08 C8E ? GO:0006869 ... P10384 21593406
    267 3pgu:A (1.7) BS09 C8E ? GO:0006869 ... P10384 21593406
    268 3pgu:A (1.7) BS10 C8E ? GO:0006869 ... P10384 21593406
    269 3por:A (2.5) BS01 C8E ? GO:0006811 ... P31243 7685826
    270 3prn:A (1.9) BS02 C8E ? GO:0006811 ... P39767 9684893
    271 3prn:A (1.9) BS03 C8E ? GO:0006811 ... P39767 9684893
    272 3qra:A (1.801) BS01 C8E ? GO:0044384 ... Q8D0Z7 22078566
    273 3qra:A (1.801) BS02 C8E ? GO:0044384 ... Q8D0Z7 22078566
    274 3qra:A (1.801) BS03 C8E ? GO:0044384 ... Q8D0Z7 22078566
    275 3qrc:A (1.852) BS03 C8E ? GO:0044384 ... Q8D0Z7 22078566
    276 3qrc:A (1.852) BS04 C8E ? GO:0044384 ... Q8D0Z7 22078566
    277 3qrc:A (1.852) BS05 C8E ? GO:0044384 ... Q8D0Z7 22078566
    278 3qrc:B (1.852) BS03 C8E ? GO:0044384 ... Q8D0Z7 22078566
    279 3qrc:B (1.852) BS04 C8E ? GO:0044384 ... Q8D0Z7 22078566
    280 3qrc:B (1.852) BS05 C8E ? GO:0044384 ... Q8D0Z7 22078566
    281 3qrc:B (1.852) BS06 C8E ? GO:0044384 ... Q8D0Z7 22078566
    282 3qrc:B (1.852) BS07 C8E ? GO:0044384 ... Q8D0Z7 22078566
    283 3qrc:B (1.852) BS08 C8E ? GO:0044384 ... Q8D0Z7 22078566
    284 3rbh:A (2.301) BS02 C8E ? GO:0009279 ... P18895 21778407
    285 3rbh:A (2.301) BS03 C8E ? GO:0009279 ... P18895 21778407
    286 3rbh:B (2.301) BS02 C8E ? GO:0009279 ... P18895 21778407
    287 3rbh:B (2.301) BS03 C8E ? GO:0009279 ... P18895 21778407
    288 3rbh:B (2.301) BS04 C8E ? GO:0009279 ... P18895 21778407
    289 3rbh:B (2.301) BS05 C8E ? GO:0009279 ... P18895 21778407
    290 3rbh:C (2.301) BS01 C8E ? GO:0009279 ... P18895 21778407
    291 3rbh:C (2.301) BS03 C8E ? GO:0009279 ... P18895 21778407
    292 3rbh:C (2.301) BS04 C8E ? GO:0009279 ... P18895 21778407
    293 3rbh:D (2.301) BS01 C8E ? GO:0009279 ... P18895 21778407
    294 3rbh:D (2.301) BS03 C8E ? GO:0009279 ... P18895 21778407
    295 3rbh:D (2.301) BS04 C8E ? GO:0009279 ... P18895 21778407
    296 3rbh:D (2.301) BS05 C8E ? GO:0009279 ... P18895 21778407
    297 3rbh:D (2.301) BS06 C8E ? GO:0009279 ... P18895 21778407
    298 3rbh:D (2.301) BS07 C8E ? GO:0009279 ... P18895 21778407
    299 3rbh:D (2.301) BS08 C8E ? GO:0009279 ... P18895 21778407
    300 3rbh:D (2.301) BS09 C8E ? GO:0009279 ... P18895 21778407
    301 3rbh:D (2.301) BS10 C8E ? GO:0009279 ... P18895 21778407
    302 3rgm:A (2.6) BS01 C8E ? GO:0005509 ... P06129 21894979
    303 3rgm:A (2.6) BS02 C8E ? GO:0005509 ... P06129 21894979
    304 3rgm:A (2.6) BS03 C8E ? GO:0005509 ... P06129 21894979
    305 3rgm:A (2.6) BS04 C8E ? GO:0005509 ... P06129 21894979
    306 3rgm:A (2.6) BS05 C8E ? GO:0005509 ... P06129 21894979
    307 3rgn:A (2.3) BS01 C8E ? GO:0005509 ... P06129 21894979
    308 3rgn:A (2.3) BS02 C8E ? GO:0005509 ... P06129 21894979
    309 3rgn:A (2.3) BS03 C8E ? GO:0005509 ... P06129 21894979
    310 3rgn:A (2.3) BS04 C8E ? GO:0005509 ... P06129 21894979
    311 3slj:A (2.481) BS01 C8E 3.4.21.- GO:0019867 ... Q7BSW5 22094314
    312 3slj:A (2.481) BS02 C8E 3.4.21.- GO:0019867 ... Q7BSW5 22094314
    313 3slj:A (2.481) BS03 C8E 3.4.21.- GO:0019867 ... Q7BSW5 22094314
    314 3slj:A (2.481) BS04 C8E 3.4.21.- GO:0019867 ... Q7BSW5 22094314
    315 3slj:A (2.481) BS05 C8E 3.4.21.- GO:0019867 ... Q7BSW5 22094314
    316 3slo:A (2.52) BS01 C8E 3.4.21.- GO:0019867 ... Q7BSW5 22094314
    317 3slo:A (2.52) BS02 C8E 3.4.21.- GO:0019867 ... Q7BSW5 22094314
    318 3slt:A (2.46) BS01 C8E 3.4.21.- GO:0019867 ... Q7BSW5 22094314
    319 3slt:A (2.46) BS02 C8E 3.4.21.- GO:0019867 ... Q7BSW5 22094314
    320 3slt:A (2.46) BS03 C8E 3.4.21.- GO:0019867 ... Q7BSW5 22094314
    321 3sy7:A (2.15) BS01 C8E 3.4.21.- GO:0006508 ... P32722 22272184
    322 3sy7:A (2.15) BS02 C8E 3.4.21.- GO:0006508 ... P32722 22272184
    323 3sy7:A (2.15) BS03 C8E 3.4.21.- GO:0006508 ... P32722 22272184
    324 3sy9:A (2.8) BS01 C8E ? GO:0015288 ... Q9I6X0 22272184
    325 3sy9:A (2.8) BS02 C8E ? GO:0015288 ... Q9I6X0 22272184
    326 3sy9:A (2.8) BS03 C8E ? GO:0015288 ... Q9I6X0 22272184
    327 3sy9:A (2.8) BS04 C8E ? GO:0015288 ... Q9I6X0 22272184
    328 3sy9:A (2.8) BS05 C8E ? GO:0015288 ... Q9I6X0 22272184
    329 3sy9:B (2.8) BS01 C8E ? GO:0015288 ... Q9I6X0 22272184
    330 3sy9:B (2.8) BS02 C8E ? GO:0015288 ... Q9I6X0 22272184
    331 3sy9:B (2.8) BS03 C8E ? GO:0015288 ... Q9I6X0 22272184
    332 3sy9:B (2.8) BS04 C8E ? GO:0015288 ... Q9I6X0 22272184
    333 3sy9:C (2.8) BS01 C8E ? GO:0015288 ... Q9I6X0 22272184
    334 3sy9:C (2.8) BS02 C8E ? GO:0015288 ... Q9I6X0 22272184
    335 3sy9:C (2.8) BS03 C8E ? GO:0015288 ... Q9I6X0 22272184
    336 3sy9:D (2.8) BS01 C8E ? GO:0015288 ... Q9I6X0 22272184
    337 3syb:A (2.7) BS01 C8E ? GO:0015288 ... Q9HVS0 22272184
    338 3syb:A (2.7) BS02 C8E ? GO:0015288 ... Q9HVS0 22272184
    339 3sys:A (1.65) BS01 C8E ? GO:0015288 ... Q9HUR5 22272184
    340 3sys:A (1.65) BS02 C8E ? GO:0015288 ... Q9HUR5 22272184
    341 3sys:A (1.65) BS03 C8E ? GO:0015288 ... Q9HUR5 22272184
    342 3sys:A (1.65) BS04 C8E ? GO:0015288 ... Q9HUR5 22272184
    343 3sys:A (1.65) BS05 C8E ? GO:0015288 ... Q9HUR5 22272184
    344 3sys:A (1.65) BS06 C8E ? GO:0015288 ... Q9HUR5 22272184
    345 3sys:A (1.65) BS07 C8E ? GO:0015288 ... Q9HUR5 22272184
    346 3sys:B (1.65) BS01 C8E ? GO:0015288 ... Q9HUR5 22272184
    347 3sys:B (1.65) BS02 C8E ? GO:0015288 ... Q9HUR5 22272184
    348 3sys:B (1.65) BS03 C8E ? GO:0015288 ... Q9HUR5 22272184
    349 3sys:B (1.65) BS04 C8E ? GO:0015288 ... Q9HUR5 22272184
    350 3sys:B (1.65) BS05 C8E ? GO:0015288 ... Q9HUR5 22272184
    351 3sys:B (1.65) BS06 C8E ? GO:0015288 ... Q9HUR5 22272184
    352 3sys:B (1.65) BS07 C8E ? GO:0015288 ... Q9HUR5 22272184
    353 3szd:A (2.311) BS01 C8E ? GO:0015288 ... Q9I6P8 22272184
    354 3szd:A (2.311) BS02 C8E ? GO:0015288 ... Q9I6P8 22272184
    355 3szd:B (2.311) BS01 C8E ? GO:0015288 ... Q9I6P8 22272184
    356 3szd:B (2.311) BS02 C8E ? GO:0015288 ... Q9I6P8 22272184
    357 3szd:B (2.311) BS03 C8E ? GO:0015288 ... Q9I6P8 22272184
    358 3szv:A (1.45) BS01 C8E ? GO:0015288 ... Q9I202 22272184
    359 3szv:A (1.45) BS02 C8E ? GO:0015288 ... Q9I202 22272184
    360 3szv:A (1.45) BS03 C8E ? GO:0015288 ... Q9I202 22272184
    361 3szv:A (1.45) BS04 C8E ? GO:0015288 ... Q9I202 22272184
    362 3szv:A (1.45) BS05 C8E ? GO:0015288 ... Q9I202 22272184
    363 3szv:A (1.45) BS06 C8E ? GO:0015288 ... Q9I202 22272184
    364 3t0s:A (2.2) BS01 C8E ? GO:0015288 ... Q9HWP4 22272184
    365 3t0s:A (2.2) BS02 C8E ? GO:0015288 ... Q9HWP4 22272184
    366 3t0s:A (2.2) BS03 C8E ? GO:0015288 ... Q9HWP4 22272184
    367 3t0s:A (2.2) BS04 C8E ? GO:0015288 ... Q9HWP4 22272184
    368 3t24:A (2.4) BS01 C8E ? GO:0010167 ... Q9HZH0 22272184
    369 3t24:A (2.4) BS02 C8E ? GO:0010167 ... Q9HZH0 22272184
    370 3t24:B (2.4) BS01 C8E ? GO:0010167 ... Q9HZH0 22272184
    371 3t24:B (2.4) BS02 C8E ? GO:0010167 ... Q9HZH0 22272184
    372 3t24:C (2.4) BS01 C8E ? GO:0010167 ... Q9HZH0 22272184
    373 3t24:C (2.4) BS02 C8E ? GO:0010167 ... Q9HZH0 22272184
    374 3v8x:A (2.6) BS03 C8E ? GO:0005515 ... Q9K0U9 22327295
    375 3v8x:A (2.6) BS04 C8E ? GO:0005515 ... Q9K0U9 22327295
    376 4ctd:A (3.2) BS01 C8E ? GO:0006811 ... P76045 24988371
    377 4d5b:A (1.702) BS06 C8E ? GO:0098657 ... Q48391 26015567
    378 4d5b:A (1.702) BS07 C8E ? GO:0098657 ... Q48391 26015567
    379 4d5b:A (1.702) BS08 C8E ? GO:0098657 ... Q48391 26015567
    380 4d5b:A (1.702) BS09 C8E ? GO:0098657 ... Q48391 26015567
    381 4d5b:A (1.702) BS10 C8E ? GO:0098657 ... Q48391 26015567
    382 4d5b:A (1.702) BS11 C8E ? GO:0098657 ... Q48391 26015567
    383 4d5b:A (1.702) BS12 C8E ? GO:0098657 ... Q48391 26015567
    384 4d5b:A (1.702) BS13 C8E ? GO:0098657 ... Q48391 26015567
    385 4d5b:A (1.702) BS14 C8E ? GO:0098657 ... Q48391 26015567
    386 4d5b:B (1.702) BS06 C8E ? GO:0098657 ... Q48391 26015567
    387 4d5b:B (1.702) BS07 C8E ? GO:0098657 ... Q48391 26015567
    388 4d5b:B (1.702) BS08 C8E ? GO:0098657 ... Q48391 26015567
    389 4d5b:B (1.702) BS09 C8E ? GO:0098657 ... Q48391 26015567
    390 4d5b:B (1.702) BS10 C8E ? GO:0098657 ... Q48391 26015567
    391 4d5b:B (1.702) BS11 C8E ? GO:0098657 ... Q48391 26015567
    392 4d5b:B (1.702) BS12 C8E ? GO:0098657 ... Q48391 26015567
    393 4d5b:B (1.702) BS13 C8E ? GO:0098657 ... Q48391 26015567
    394 4d5b:B (1.702) BS14 C8E ? GO:0098657 ... Q48391 26015567
    395 4d5b:B (1.702) BS15 C8E ? GO:0098657 ... Q48391 26015567
    396 4d5b:B (1.702) BS16 C8E ? GO:0098657 ... Q48391 26015567
    397 4d5b:B (1.702) BS17 C8E ? GO:0098657 ... Q48391 26015567
    398 4d5d:A (1.902) BS06 C8E ? GO:0098657 ... Q48391 26015567
    399 4d5d:A (1.902) BS07 C8E ? GO:0098657 ... Q48391 26015567
    400 4d5d:A (1.902) BS08 C8E ? GO:0098657 ... Q48391 26015567
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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