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BioLiP
Download all results in tab-seperated text for 460 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 7u3b:I (3.6) BS01 C2E ? GO:0000166 ... A0A5P2ALW6 36192422
    402 7u3b:I (3.6) BS03 C2E ? GO:0000166 ... A0A5P2ALW6 36192422
    403 7u3b:J (3.6) BS01 C2E ? GO:0000166 ... A0A5P2ALW6 36192422
    404 7u3b:J (3.6) BS03 C2E ? GO:0000166 ... A0A5P2ALW6 36192422
    405 7u3d:A (2.4) BS04 C2E ? GO:0000166 ... A0A5P2ALW6 36192422
    406 7u3d:A (2.4) BS05 C2E ? GO:0000166 ... A0A5P2ALW6 36192422
    407 7u3d:B (2.4) BS04 C2E ? GO:0000166 ... A0A5P2ALW6 36192422
    408 7u3d:B (2.4) BS05 C2E ? GO:0000166 ... A0A5P2ALW6 36192422
    409 7u3d:C (2.4) BS04 C2E ? GO:0000166 ... A0A5P2ALW6 36192422
    410 7u3d:C (2.4) BS05 C2E ? GO:0000166 ... A0A5P2ALW6 36192422
    411 7u3d:F (2.4) BS04 C2E ? GO:0000166 ... A0A5P2ALW6 36192422
    412 7u3d:F (2.4) BS05 C2E ? GO:0000166 ... A0A5P2ALW6 36192422
    413 7un8:A (3.3) BS01 C2E 3.2.2.5 GO:0000166 ... A0A2T5Y4G4 35859168
    414 7un8:B (3.3) BS01 C2E 3.2.2.5 GO:0000166 ... A0A2T5Y4G4 35859168
    415 7un8:C (3.3) BS01 C2E 3.2.2.5 GO:0000166 ... A0A2T5Y4G4 35859168
    416 7un8:D (3.3) BS01 C2E 3.2.2.5 GO:0000166 ... A0A2T5Y4G4 35859168
    417 7un8:E (3.3) BS01 C2E 3.2.2.5 GO:0000166 ... A0A2T5Y4G4 35859168
    418 7un8:F (3.3) BS01 C2E 3.2.2.5 GO:0000166 ... A0A2T5Y4G4 35859168
    419 7un9:A (3.3) BS01 C2E 3.2.2.5 GO:0050135 ... A0A2T5Y4G4 35859168
    420 7un9:B (3.3) BS01 C2E 3.2.2.5 GO:0050135 ... A0A2T5Y4G4 35859168
    421 7un9:C (3.3) BS01 C2E 3.2.2.5 GO:0050135 ... A0A2T5Y4G4 35859168
    422 7un9:D (3.3) BS01 C2E 3.2.2.5 GO:0050135 ... A0A2T5Y4G4 35859168
    423 7un9:E (3.3) BS01 C2E 3.2.2.5 GO:0050135 ... A0A2T5Y4G4 35859168
    424 7un9:F (3.3) BS01 C2E 3.2.2.5 GO:0050135 ... A0A2T5Y4G4 35859168
    425 7un9:G (3.3) BS01 C2E 3.2.2.5 GO:0050135 ... A0A2T5Y4G4 35859168
    426 7un9:H (3.3) BS01 C2E 3.2.2.5 GO:0050135 ... A0A2T5Y4G4 35859168
    427 7un9:I (3.3) BS01 C2E 3.2.2.5 GO:0050135 ... A0A2T5Y4G4 35859168
    428 7un9:J (3.3) BS01 C2E 3.2.2.5 GO:0050135 ... A0A2T5Y4G4 35859168
    429 7un9:K (3.3) BS01 C2E 3.2.2.5 GO:0050135 ... A0A2T5Y4G4 35859168
    430 7un9:L (3.3) BS01 C2E 3.2.2.5 GO:0050135 ... A0A2T5Y4G4 35859168
    431 8hja:A (2.38) BS01 C2E ? GO:0000166 ... P74113 36947515
    432 8hja:A (2.38) BS02 C2E ? GO:0000166 ... P74113 36947515
    433 8hja:B (2.38) BS01 C2E ? GO:0000166 ... P74113 36947515
    434 8hja:B (2.38) BS02 C2E ? GO:0000166 ... P74113 36947515
    435 8hwi:A (2.73) BS01 C2E 3.2.2.5 N/A A0A327WNX5 38129386
    436 8hwi:B (2.73) BS01 C2E 3.2.2.5 N/A A0A327WNX5 38129386
    437 8hwi:C (2.73) BS01 C2E 3.2.2.5 N/A A0A327WNX5 38129386
    438 8hwi:D (2.73) BS01 C2E 3.2.2.5 N/A A0A327WNX5 38129386
    439 8hwi:E (2.73) BS01 C2E 3.2.2.5 N/A A0A327WNX5 38129386
    440 8hwi:F (2.73) BS01 C2E 3.2.2.5 N/A A0A327WNX5 38129386
    441 8hy9:A (1.462) BS01 C2E 3.2.2.5 N/A E4TDY5 38129386
    442 8k5q:A (2.28) BS01 C2E ? GO:0000166 ... Q8ZRC9 38532247
    443 8kbk:A (2.28) BS02 C2E N/A N/A A0A447EB45 N/A
    444 8kbk:B (2.28) BS02 C2E N/A N/A A0A447EB45 N/A
    445 8kbk:C (2.28) BS02 C2E N/A N/A A0A447EB45 N/A
    446 8kbk:D (2.28) BS01 C2E N/A N/A A0A447EB45 N/A
    447 8kbl:A (1.98) BS02 C2E N/A N/A A0A447EB45 N/A
    448 8kbm:A (1.38) BS01 C2E N/A N/A A0A447EB45 N/A
    449 8kbm:B (1.38) BS01 C2E N/A N/A A0A447EB45 N/A
    450 8pb9:D (3.3) BS01 C2E ? GO:0005524 ... G3XCV0 38051770
    451 8pb9:D (3.3) BS02 C2E ? GO:0005524 ... G3XCV0 38051770
    452 8pdk:A (2.0) BS01 C2E N/A N/A Q5SLC9 N/A
    453 8pdk:B (2.0) BS01 C2E N/A N/A Q5SLC9 N/A
    454 8pe0:A (1.9) BS01 C2E N/A N/A Q5SLC9 N/A
    455 8pe0:B (1.9) BS01 C2E N/A N/A Q5SLC9 N/A
    456 8pfa:A (1.8) BS01 C2E N/A N/A Q5SLC9 N/A
    457 8pfa:B (1.8) BS01 C2E N/A N/A Q5SLC9 N/A
    458 8u0i:A (1.541) BS01 C2E N/A N/A Q9I7B4 N/A
    459 8u0i:A (1.541) BS02 C2E N/A N/A Q9I7B4 N/A
    460 8wjd:A (1.71) BS01 C2E N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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