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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1y5r:A (3.0) BS02 C0R 1.1.1.146
    1.1.1.201    		 GO:0005783 ... P50172 15865440
    2 1y5r:B (3.0) BS02 C0R 1.1.1.146
    1.1.1.201    		 GO:0005783 ... P50172 15865440
    3 2a3i:A (1.95) BS02 C0R ? N/A P08235 16061183 BindingDB: Kd=0.500000nM
    4 4qf7:A (1.48) BS01 C0R 3.1.1.4 GO:0004623 ... P59071 25541253 PDBbind: -logKd/Ki=8.60, Kd=2.5nM
    5 5l91:A (2.2) BS02 C0R 1.14.14.- GO:0004497 ... D5DKI8 27686671 MOAD: Kd=91uM
    6 5l91:A (2.2) BS03 C0R 1.14.14.- GO:0004497 ... D5DKI8 27686671 MOAD: Kd=91uM
    7 5l91:A (2.2) BS04 C0R 1.14.14.- GO:0004497 ... D5DKI8 27686671 MOAD: Kd=91uM
    8 5l91:A (2.2) BS05 C0R 1.14.14.- GO:0004497 ... D5DKI8 27686671 MOAD: Kd=91uM
    9 5l91:B (2.2) BS02 C0R 1.14.14.- GO:0004497 ... D5DKI8 27686671 MOAD: Kd=91uM
    10 5l91:B (2.2) BS03 C0R 1.14.14.- GO:0004497 ... D5DKI8 27686671 MOAD: Kd=91uM
    11 5l91:B (2.2) BS04 C0R 1.14.14.- GO:0004497 ... D5DKI8 27686671 MOAD: Kd=91uM
    12 5l91:B (2.2) BS05 C0R 1.14.14.- GO:0004497 ... D5DKI8 27686671 MOAD: Kd=91uM
    13 5l92:A (2.1) BS02 C0R 1.14.14.- GO:0004497 ... D5DKI8 27686671 MOAD: Kd=91uM
    14 6hgi:A (1.517) BS01 C0R ? GO:0003677 ... P01011 31103428 MOAD: Kd=0.6uM
    PDBbind: -logKd/Ki=6.22, Kd=0.6uM
    15 6hgi:B (1.517) BS01 C0R ? N/A P01011 31103428 PDBbind: -logKd/Ki=6.22, Kd=0.6uM
    16 7zh6:A (3.67) BS01 C0R ? GO:0001692 ... O75751 36344565
    17 8cbz:H (1.86) BS01 C0R N/A N/A N/A 37100101
    18 8cbz:L (1.86) BS01 C0R N/A N/A N/A 37100101
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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