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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cbx:A (2.0) BS02 BZS 3.4.17.1 GO:0004181 ... P00730 1738164 MOAD: Ki=0.45uM
    PDBbind: -logKd/Ki=6.35, Ki=0.45uM
    BindingDB: Ki=500nM
    2 1hyt:A (1.7) BS06 BZS 3.4.24.27 GO:0004222 ... P00800 8034637
    3 1wht:A (2.0) BS01 BZS 3.4.16.6 GO:0004185 ... P08819 7727364 MOAD: Ki=0.2mM
    PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    4 1wht:B (2.0) BS01 BZS 3.4.16.6 GO:0004185 ... P08819 7727364 PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    5 4a38:A (2.0) BS02 BZS ? GO:0004181 ... Q9I012 22645247
    6 4duk:A (1.57) BS05 BZS 3.4.17.18 GO:0004181 ... P29068 25619204
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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