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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2e41:A (1.75) BS01 BTX 6.3.4.15 GO:0004077 ... O57883 18372281
    2 2e41:B (1.75) BS01 BTX 6.3.4.15 GO:0004077 ... O57883 18372281
    3 2ewn:A (2.8) BS01 BTX 6.3.4.15 GO:0000976 ... P06709 16438984 BindingDB: Ki=87nM, Kd=1.5nM
    4 2ewn:B (2.8) BS01 BTX 6.3.4.15 GO:0000976 ... P06709 16438984 BindingDB: Ki=87nM, Kd=1.5nM
    5 4dq2:A (2.5) BS01 BTX N/A GO:0004077 ... N/A 22437830 MOAD: Ki=0.03uM
    PDBbind: -logKd/Ki=7.52, Ki=0.03uM
    6 4wf2:A (2.31) BS01 BTX 6.3.4.15 GO:0000976 ... P06709 25746672 PDBbind: -logKd/Ki=8.10, Kd=8.03nM
    BindingDB: Ki=87nM, Kd=1.5nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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