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BioLiP
Download all results in tab-seperated text for 305 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4ggz:D (1.75) BS01 BTN ? GO:0009374 ... Q89U61 23661323 MOAD: Kd=0.066nM
    202 4irw:A (1.396) BS08 BTN ? GO:0009374 ... P22629 N/A BindingDB: Kd=1.000000nM
    203 4jnj:A (1.902) BS01 BTN N/A GO:0009374 ... N/A 23670729 PDBbind: -logKd/Ki=9.07, Kd=0.85nM
    204 4jnj:B (1.902) BS01 BTN N/A GO:0009374 ... N/A 23670729
    205 4jnj:C (1.902) BS02 BTN N/A GO:0009374 ... N/A 23670729
    206 4jnj:D (1.902) BS01 BTN N/A GO:0009374 ... N/A 23670729
    207 4loc:A (2.26) BS03 BTN 6.4.1.1 GO:0003824 ... Q2K340 25157442
    208 4loc:B (2.26) BS03 BTN 6.4.1.1 GO:0003824 ... Q2K340 25157442
    209 4loc:C (2.26) BS03 BTN 6.4.1.1 GO:0003824 ... Q2K340 25157442
    210 4loc:D (2.26) BS03 BTN 6.4.1.1 GO:0003824 ... Q2K340 25157442
    211 4mfe:A (2.61) BS03 BTN 6.4.1.1 GO:0003824 ... Q2K340 24157795
    212 4mfe:B (2.61) BS03 BTN 6.4.1.1 GO:0003824 ... Q2K340 24157795
    213 4mfe:C (2.61) BS03 BTN 6.4.1.1 GO:0003824 ... Q2K340 24157795
    214 4mfe:D (2.61) BS03 BTN 6.4.1.1 GO:0003824 ... Q2K340 24157795
    215 4yvb:A (1.351) BS01 BTN ? GO:0009374 ... P22629 N/A BindingDB: Kd=1.000000nM
    216 4yvb:B (1.351) BS01 BTN ? GO:0009374 ... P22629 N/A BindingDB: Kd=1.000000nM
    217 4yvb:C (1.351) BS01 BTN ? GO:0009374 ... P22629 N/A BindingDB: Kd=1.000000nM
    218 4yvb:D (1.351) BS01 BTN ? GO:0009374 ... P22629 N/A BindingDB: Kd=1.000000nM
    219 4z28:A (1.66) BS01 BTN ? GO:0009374 ... A9D857 26126731
    220 4z28:B (1.66) BS01 BTN ? GO:0009374 ... A9D857 26126731
    221 5vyw:A (3.1) BS02 BTN N/A GO:0003824 ... N/A 28808024
    222 6aul:A (1.36) BS01 BTN ? GO:0005576 ... P22629 29401385 BindingDB: Kd=1.000000nM
    223 6bi2:L (1.801) BS01 BTN N/A N/A N/A 29388367
    224 6bi2:M (1.801) BS01 BTN N/A N/A N/A 29388367
    225 6hdt:A (1.54) BS01 BTN ? GO:0009374 ... A0A493R6X0 30369031
    226 6hdt:B (1.54) BS01 BTN ? GO:0009374 ... A0A493R6X0 30369031
    227 6hdt:C (1.54) BS01 BTN ? GO:0009374 ... A0A493R6X0 30369031
    228 6hdt:D (1.54) BS01 BTN ? GO:0009374 ... A0A493R6X0 30369031
    229 6j6j:A (3.2) BS01 BTN ? GO:0009374 ... P22629 31160591 BindingDB: Kd=1.000000nM
    230 6j6j:B (3.2) BS01 BTN ? GO:0009374 ... P22629 31160591 BindingDB: Kd=1.000000nM
    231 6j6j:C (3.2) BS01 BTN ? GO:0009374 ... P22629 31160591 BindingDB: Kd=1.000000nM
    232 6j6j:D (3.2) BS01 BTN ? GO:0009374 ... P22629 31160591 BindingDB: Kd=1.000000nM
    233 6m9b:A (1.548) BS01 BTN ? GO:0009374 ... P22629 30950397 BindingDB: Kd=1.000000nM
    234 6m9b:B (1.548) BS01 BTN ? GO:0009374 ... P22629 30950397 BindingDB: Kd=1.000000nM
    235 6m9b:C (1.548) BS01 BTN ? GO:0009374 ... P22629 30950397 BindingDB: Kd=1.000000nM
    236 6m9b:D (1.548) BS01 BTN ? GO:0009374 ... P22629 30950397 BindingDB: Kd=1.000000nM
    237 6njz:B (1.9) BS02 BTN 2.7.10.1 N/A P29317 31015204
    238 6nkp:B (2.033) BS02 BTN 2.7.10.1 N/A P29317 31015204
    239 6uc3:A (1.84) BS01 BTN ? GO:0009374 ... P22629 34415744 BindingDB: Kd=1.000000nM
    240 6uc3:B (1.84) BS01 BTN ? GO:0009374 ... P22629 34415744 BindingDB: Kd=1.000000nM
    241 6udc:A (2.1) BS01 BTN ? GO:0009374 ... P22629 34415744 BindingDB: Kd=1.000000nM
    242 6udc:B (2.1) BS01 BTN ? GO:0009374 ... P22629 34415744 BindingDB: Kd=1.000000nM
    243 6udc:C (2.1) BS01 BTN ? GO:0009374 ... P22629 34415744 BindingDB: Kd=1.000000nM
    244 6udc:D (2.1) BS01 BTN ? GO:0009374 ... P22629 34415744 BindingDB: Kd=1.000000nM
    245 6vjk:A (1.6) BS01 BTN ? GO:0009374 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    246 6vjk:B (1.6) BS01 BTN ? GO:0009374 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    247 6vjk:C (1.6) BS01 BTN ? GO:0009374 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    248 6vjk:D (1.6) BS01 BTN ? GO:0009374 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    249 6vjk:E (1.6) BS01 BTN ? GO:0009374 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    250 6vjk:F (1.6) BS01 BTN ? GO:0009374 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    251 6vjk:G (1.6) BS01 BTN ? GO:0009374 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    252 6vjk:H (1.6) BS01 BTN ? GO:0009374 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    253 6vjk:I (1.6) BS01 BTN ? GO:0009374 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    254 6vjk:J (1.6) BS01 BTN ? GO:0009374 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    255 6vjk:K (1.6) BS01 BTN ? GO:0009374 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    256 6vjk:L (1.6) BS01 BTN ? GO:0009374 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    257 6vjl:A (1.3) BS01 BTN ? GO:0005576 ... P22629 32719366 MOAD: Kd=0.000000064M
    BindingDB: Kd=1.000000nM
    258 7cpz:A (2.5) BS01 BTN ? GO:0009374 ... N/A 33708394
    259 7dbs:A (2.33) BS01 BTN 6.3.4.15 GO:0004077 ... Q4Q6F6 33825711
    260 7efc:A (1.7) BS01 BTN ? GO:0009374 ... P22629 N/A BindingDB: Kd=1.000000nM
    261 7efd:A (1.77) BS01 BTN ? GO:0009374 ... P22629 N/A BindingDB: Kd=1.000000nM
    262 7la8:A (1.8965) BS02 BTN N/A N/A N/A 34083726
    263 7la8:B (1.8965) BS02 BTN N/A N/A N/A 34083726
    264 7ouq:A (2.63) BS01 BTN ? GO:0009374 ... A0A3A4VWA2 34726340
    265 7ouq:B (2.63) BS01 BTN ? GO:0009374 ... A0A3A4VWA2 34726340
    266 7p8z:A (1.67) BS01 BTN ? GO:0009374 ... A0A3A4VWA2 34726340
    267 7p8z:B (1.67) BS01 BTN ? GO:0009374 ... A0A3A4VWA2 34726340
    268 7p8z:C (1.67) BS01 BTN ? GO:0009374 ... A0A3A4VWA2 34726340
    269 7p8z:D (1.67) BS01 BTN ? GO:0009374 ... A0A3A4VWA2 34726340
    270 7zz1:A (2.27) BS04 BTN N/A GO:0003824 ... N/A 36261450
    271 7zz3:A (2.41) BS01 BTN N/A GO:0003824 ... N/A 36261450
    272 8an6:A (1.9) BS01 BTN N/A GO:0009374 ... N/A 36853192
    273 8an6:B (1.9) BS01 BTN N/A GO:0009374 ... N/A 36853192
    274 8an6:C (1.9) BS01 BTN N/A GO:0009374 ... N/A 36853192
    275 8an6:D (1.9) BS01 BTN N/A GO:0009374 ... N/A 36853192
    276 8ass:A (2.12) BS01 BTN N/A GO:0009374 ... N/A 36853192
    277 8ass:B (2.12) BS01 BTN N/A GO:0009374 ... N/A 36853192
    278 8ass:C (2.12) BS01 BTN N/A GO:0009374 ... N/A 36853192
    279 8ass:D (2.12) BS01 BTN N/A GO:0009374 ... N/A 36853192
    280 8asu:A (2.52) BS01 BTN N/A GO:0009374 ... N/A 36853192
    281 8asu:B (2.52) BS01 BTN N/A GO:0009374 ... N/A 36853192
    282 8asu:C (2.52) BS01 BTN N/A GO:0009374 ... N/A 36853192
    283 8asu:D (2.52) BS01 BTN N/A GO:0009374 ... N/A 36853192
    284 8avp:A (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    285 8avp:B (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    286 8avp:C (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    287 8avp:D (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    288 8avp:E (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    289 8avp:F (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    290 8avp:G (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    291 8avp:H (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    292 8avp:I (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    293 8avp:J (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    294 8avp:K (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    295 8avp:L (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    296 8avp:M (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    297 8avp:N (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    298 8avp:O (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    299 8avp:P (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    300 8avp:Q (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    301 8avp:R (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    302 8avp:S (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    303 8avp:T (2.87) BS01 BTN N/A GO:0009374 ... N/A 36853192
    304 8fi3:A (2.9) BS01 BTN 6.3.4.15 GO:0003677 ... A0A0W7ZMT5 N/A
    305 8fi3:B (2.9) BS01 BTN 6.3.4.15 GO:0003677 ... A0A0W7ZMT5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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