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BioLiP
Download all results in tab-seperated text for 96 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1azf:A (1.8) BS01 BR 3.2.1.17 GO:0003796 ... P00698 9757106
    2 1cij:A (2.3) BS01 BR 3.8.1.5 GO:0003824 ... P22643 10508409
    3 1cij:A (2.3) BS02 BR 3.8.1.5 GO:0003824 ... P22643 10508409
    4 1cij:A (2.3) BS03 BR 3.8.1.5 GO:0003824 ... P22643 10508409
    5 1d2v:C (1.75) BS03 BR 1.11.2.2 GO:0004601 ... P05164 10766826
    6 1d2v:C (1.75) BS04 BR 1.11.2.2 GO:0004601 ... P05164 10766826
    7 1d2v:C (1.75) BS05 BR 1.11.2.2 GO:0004601 ... P05164 10766826
    8 1d2v:C (1.75) BS06 BR 1.11.2.2 GO:0004601 ... P05164 10766826
    9 1d2v:D (1.75) BS04 BR 1.11.2.2 GO:0004601 ... P05164 10766826
    10 1d2v:D (1.75) BS05 BR 1.11.2.2 GO:0004601 ... P05164 10766826
    11 1d2v:D (1.75) BS06 BR 1.11.2.2 GO:0004601 ... P05164 10766826
    12 1d7w:C (1.9) BS02 BR 1.11.2.2 GO:0004601 ... P05164 11705390
    13 1d7w:C (1.9) BS05 BR 1.11.2.2 GO:0004601 ... P05164 11705390
    14 1d7w:C (1.9) BS06 BR 1.11.2.2 GO:0004601 ... P05164 11705390
    15 1d7w:D (1.9) BS02 BR 1.11.2.2 GO:0004601 ... P05164 11705390
    16 1d7w:D (1.9) BS05 BR 1.11.2.2 GO:0004601 ... P05164 11705390
    17 1ged:A (2.0) BS01 BR 1.7.1.14 GO:0004497 ... P23295 11076941
    18 1ged:A (2.0) BS02 BR 1.7.1.14 GO:0004497 ... P23295 11076941
    19 1gqb:A (1.8) BS01 BR ? GO:0005537 ... P11717 12499540
    20 1gqb:A (1.8) BS02 BR ? GO:0005537 ... P11717 12499540
    21 1gqb:B (1.8) BS01 BR ? GO:0005537 ... P11717 12499540
    22 1gqb:B (1.8) BS02 BR ? GO:0005537 ... P11717 12499540
    23 1l1g:A (1.5) BS01 BR 3.4.21.36 GO:0004252 ... P00772 12198297
    24 1lz9:A (1.7) BS01 BR 3.2.1.17 GO:0003796 ... P00698 10339408
    25 1lz9:A (1.7) BS02 BR 3.2.1.17 GO:0003796 ... P00698 10339408
    26 1mgy:A (2.0) BS01 BR ? GO:0005216 ... P02945 12829500
    27 1mgy:A (2.0) BS02 BR ? GO:0005216 ... P02945 12829500
    28 1xmt:A (1.15) BS01 BR 2.3.1.- N/A Q9CAQ2 17128971
    29 1xmt:A (1.15) BS02 BR 2.3.1.- N/A Q9CAQ2 17128971
    30 1xmt:A (1.15) BS03 BR 2.3.1.- N/A Q9CAQ2 17128971
    31 1xmt:A (1.15) BS04 BR 2.3.1.- N/A Q9CAQ2 17128971
    32 1xmt:A (1.15) BS05 BR 2.3.1.- N/A Q9CAQ2 17128971
    33 1xmt:A (1.15) BS06 BR 2.3.1.- N/A Q9CAQ2 17128971
    34 2civ:A (1.8) BS09 BR 1.11.1.10 GO:0004601 ... P04963 16790441
    35 2cix:A (1.8) BS14 BR 1.11.1.10 GO:0004601 ... P04963 16790441
    36 2ciy:A (1.7) BS11 BR 1.11.1.10 GO:0004601 ... P04963 16790441
    37 2ciz:A (1.3) BS13 BR 1.11.1.10 GO:0004601 ... P04963 16790441
    38 2g2p:A (2.1) BS05 BR 3.5.2.17 GO:0006144 ... P76341 16723258
    39 2g2p:B (2.1) BS05 BR 3.5.2.17 GO:0006144 ... P76341 16723258
    40 2g2p:C (2.1) BS04 BR 3.5.2.17 GO:0006144 ... P76341 16723258
    41 2g2p:D (2.1) BS05 BR 3.5.2.17 GO:0006144 ... P76341 16723258
    42 2hi8:X (1.64) BS02 BR 1.8.3.7 N/A Q8NBK3 17452787
    43 2hi8:X (1.64) BS03 BR 1.8.3.7 N/A Q8NBK3 17452787
    44 3a0b:A (3.7) BS08 BR 1.10.3.9 GO:0005506 ... P51765 19433803
    45 3a0b:a (3.7) BS07 BR 1.10.3.9 GO:0005506 ... P51765 19433803
    46 3a3k:A (2.5) BS01 BR 4.6.1.2 GO:0016020 ... P18910 20066666
    47 3a3k:B (2.5) BS01 BR 4.6.1.2 GO:0016020 ... P18910 20066666
    48 3fys:A (2.5) BS01 BR ? GO:0008289 ... P32436 19390149
    49 3fys:A (2.5) BS02 BR ? GO:0008289 ... P32436 19390149
    50 3fys:A (2.5) BS03 BR ? GO:0008289 ... P32436 19390149
    51 3klc:A (1.76) BS01 BR 3.5.5.1 GO:0000257 ... Q9UYV8 21095228
    52 3klc:A (1.76) BS02 BR 3.5.5.1 GO:0000257 ... Q9UYV8 21095228
    53 3klc:A (1.76) BS03 BR 3.5.5.1 GO:0000257 ... Q9UYV8 21095228
    54 3klc:A (1.76) BS04 BR 3.5.5.1 GO:0000257 ... Q9UYV8 21095228
    55 3klc:B (1.76) BS01 BR 3.5.5.1 GO:0000257 ... Q9UYV8 21095228
    56 3klc:B (1.76) BS02 BR 3.5.5.1 GO:0000257 ... Q9UYV8 21095228
    57 3klc:B (1.76) BS03 BR 3.5.5.1 GO:0000257 ... Q9UYV8 21095228
    58 3s8y:A (2.1) BS01 BR 3.1.2.12 GO:0005829 ... D0VWZ4 22519667
    59 4owb:A (1.69) BS02 BR 3.2.1.17 GO:0003796 ... P00698 25195879
    60 4owb:A (1.69) BS03 BR 3.2.1.17 GO:0003796 ... P00698 25195879
    61 4owb:A (1.69) BS04 BR 3.2.1.17 GO:0003796 ... P00698 25195879
    62 4owb:A (1.69) BS05 BR 3.2.1.17 GO:0003796 ... P00698 25195879
    63 4qry:A (2.2) BS02 BR N/A GO:0005216 ... N/A 26039169
    64 4qry:A (2.2) BS03 BR N/A GO:0005216 ... N/A 26039169
    65 4qry:A (2.2) BS05 BR N/A GO:0005216 ... N/A 26039169
    66 4qry:A (2.2) BS06 BR N/A GO:0005216 ... N/A 26039169
    67 4qry:B (2.2) BS01 BR N/A GO:0005216 ... N/A 26039169
    68 4qry:B (2.2) BS03 BR N/A GO:0005216 ... N/A 26039169
    69 4qry:B (2.2) BS05 BR N/A GO:0005216 ... N/A 26039169
    70 4qry:C (2.2) BS01 BR N/A GO:0005216 ... N/A 26039169
    71 4qry:C (2.2) BS03 BR N/A GO:0005216 ... N/A 26039169
    72 4qry:C (2.2) BS05 BR N/A GO:0005216 ... N/A 26039169
    73 4qry:E (2.2) BS02 BR N/A GO:0005216 ... N/A 26039169
    74 4qry:E (2.2) BS03 BR N/A GO:0005216 ... N/A 26039169
    75 4qry:E (2.2) BS05 BR N/A GO:0005216 ... N/A 26039169
    76 4qry:E (2.2) BS06 BR N/A GO:0005216 ... N/A 26039169
    77 4qry:F (2.2) BS01 BR N/A GO:0005216 ... N/A 26039169
    78 4qry:F (2.2) BS03 BR N/A GO:0005216 ... N/A 26039169
    79 4qry:F (2.2) BS04 BR N/A GO:0005216 ... N/A 26039169
    80 4qry:F (2.2) BS06 BR N/A GO:0005216 ... N/A 26039169
    81 4qry:G (2.2) BS01 BR N/A GO:0005216 ... N/A 26039169
    82 4qry:G (2.2) BS03 BR N/A GO:0005216 ... N/A 26039169
    83 4qry:G (2.2) BS04 BR N/A GO:0005216 ... N/A 26039169
    84 4qry:G (2.2) BS06 BR N/A GO:0005216 ... N/A 26039169
    85 4ygj:A (1.1) BS02 BR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25738615
    86 4ygj:A (1.1) BS03 BR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25738615
    87 4ygj:A (1.1) BS04 BR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25738615
    88 5hmj:A (1.2999) BS01 BR 3.2.1.17 GO:0003796 ... P00698 26919531
    89 5hmj:A (1.2999) BS02 BR 3.2.1.17 GO:0003796 ... P00698 26919531
    90 5hmj:A (1.2999) BS03 BR 3.2.1.17 GO:0003796 ... P00698 26919531
    91 5mnu:A (1.56) BS02 BR 3.5.2.6 GO:0008658 ... P14489 28678295
    92 5mnu:B (1.56) BS02 BR 3.5.2.6 GO:0008658 ... P14489 28678295
    93 5mnu:B (1.56) BS03 BR 3.5.2.6 GO:0008658 ... P14489 28678295
    94 7l1e:B (3.2) BS01 BR ? GO:0016020 ... L1J207 33998458
    95 7roo:A (1.52) BS01 BR ? GO:0046872 ... A0A1Y0K711 35212625
    96 7roo:A (1.52) BS02 BR ? GO:0046872 ... A0A1Y0K711 35212625
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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