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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1eir:A (2.0) BS02 BPY 1.13.11.39 GO:0003824 ... P17297 11293547
    2 1kmy:A (2.0) BS02 BPY 1.13.11.39 GO:0003824 ... P47228 9857017 MOAD: Kd=8uM
    PDBbind: -logKd/Ki=5.10, Kd=8uM
    3 1kw6:B (1.45) BS02 BPY 1.13.11.39 GO:0003824 ... P17297 12206778
    4 1kw8:B (2.0) BS03 BPY 1.13.11.39 GO:0003824 ... P17297 12206778
    5 1kw9:B (1.95) BS02 BPY 1.13.11.39 GO:0003824 ... P17297 12206778
    6 1kwc:B (2.1) BS01 BPY 1.13.11.39 GO:0003824 ... P17297 12206778
    7 2ei3:A (1.9) BS02 BPY 1.13.11.56 GO:0003824 ... P0A108 N/A
    8 2ei3:A (1.9) BS03 BPY 1.13.11.56 GO:0003824 ... P0A108 N/A
    9 2ei3:A (1.9) BS04 BPY 1.13.11.56 GO:0003824 ... P0A108 N/A
    10 3zv5:A (2.4) BS02 BPY 1.3.1.56 GO:0009056 ... Q46381 21880718
    11 6llh:A (1.99) BS03 BPY ? GO:0046872 ... Q84II6 N/A
    12 6llh:B (1.99) BS03 BPY ? GO:0046872 ... Q84II6 N/A
    13 6llh:C (1.99) BS03 BPY ? GO:0046872 ... Q84II6 N/A
    14 6llm:A (1.9) BS03 BPY ? GO:0046872 ... Q84II6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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