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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b4w:A (2.6) BS01 BOG 3.1.1.4 GO:0004623 ... O42187 10728829
    2 1b4w:D (2.6) BS01 BOG 3.1.1.4 GO:0004623 ... O42187 10728829
    3 1q7t:A (1.9) BS01 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    4 1q7t:A (1.9) BS02 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    5 1q7t:B (1.9) BS01 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    6 1q7t:B (1.9) BS02 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    7 1tcb:B (2.1) BS01 BOG 3.1.1.3 GO:0004806 ... P41365 8087556
    8 1tcc:B (2.5) BS01 BOG 3.1.1.3 GO:0004806 ... P41365 8087556
    9 1xez:A (2.3) BS01 BOG ? GO:0005576 ... P09545 15978620
    10 2x9l:A (1.732) BS02 BOG ? GO:0016137 ... Q6ZZJ1 21267472
    11 4rcr:M (2.8) BS03 BOG ? GO:0009772 ... P0C0Y9 3186702
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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