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BioLiP
Download all results in tab-seperated text for 1255 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 8og1:A (1.58) BS01 BMA 2.4.1.223 GO:0000287 ... O43909 37828045
    1202 8og4:B (2.1) BS01 BMA 2.4.1.223 GO:0000287 ... O43909 37828045
    1203 8ok4:A (1.23) BS01 BMA ? GO:0005886 ... B3GVS7 37656766
    1204 8ok5:A (1.27) BS01 BMA ? N/A B3GVS7 37656766
    1205 8ok6:A (1.75) BS01 BMA ? GO:0005886 ... B3GVS7 37656766
    1206 8ok6:C (1.75) BS01 BMA ? GO:0005886 ... B3GVS7 37656766
    1207 8onh:A (2.59) BS01 BMA ? N/A B3GVS7 37656766
    1208 8onh:B (2.59) BS01 BMA ? N/A B3GVS7 37656766
    1209 8onh:C (2.59) BS01 BMA ? N/A B3GVS7 37656766
    1210 8onh:G (2.59) BS01 BMA ? N/A B3GVS7 37656766
    1211 8onh:I (2.59) BS01 BMA ? N/A B3GVS7 37656766
    1212 8onh:J (2.59) BS01 BMA ? N/A B3GVS7 37656766
    1213 8onh:K (2.59) BS01 BMA ? N/A B3GVS7 37656766
    1214 8onh:L (2.59) BS01 BMA ? N/A B3GVS7 37656766
    1215 8onh:N (2.59) BS01 BMA ? N/A B3GVS7 37656766
    1216 8q5u:D (3.0) BS01 BMA N/A GO:0004553 ... T1WGN1 38569940
    1217 8q5u:F (3.0) BS01 BMA N/A GO:0004553 ... T1WGN1 38569940
    1218 8sb3:C (4.1) BS01 BMA N/A N/A N/A 37188681
    1219 8sb3:H (4.1) BS01 BMA N/A N/A N/A 37188681
    1220 8sb3:M (4.1) BS01 BMA N/A N/A N/A 37188681
    1221 8tgo:b (5.75) BS01 BMA N/A N/A N/A 38582771
    1222 8tgw:A (3.6) BS01 BMA N/A N/A N/A 39187497
    1223 8ttm:B (2.51) BS01 BMA N/A N/A P0DOX5 38598628
    1224 8ttw:C (2.96) BS01 BMA N/A N/A N/A 37872202
    1225 8ttw:G (2.96) BS01 BMA N/A N/A N/A 37872202
    1226 8ttw:K (2.96) BS01 BMA N/A N/A N/A 37872202
    1227 8tud:B (3.0) BS01 BMA N/A N/A P0DOX5 38598628
    1228 8tyc:b (3.3) BS01 BMA N/A N/A P08669
    Q9WXS1    		 N/A
    1229 8tzo:C (3.1) BS01 BMA ? GO:0005509 ... P27797 37852257
    1230 8tzr:C (3.5) BS01 BMA ? GO:0005509 ... P27797 N/A
    1231 8u48:A (1.9) BS01 BMA ? GO:0004553 ... Q8A889 38879612
    1232 8u48:B (1.9) BS01 BMA ? GO:0004553 ... Q8A889 38879612
    1233 8v06:B (2.73) BS01 BMA 3.1.16.1 GO:0003824 ... O35405 38537643
    1234 8vqr:A (2.565) BS02 BMA 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    1235 8w4l:B (3.1) BS01 BMA N/A N/A P0DOX5 38938812
    1236 8w4m:A (2.18) BS01 BMA N/A N/A P0DOX5 38938812
    1237 8w4n:A (3.1) BS01 BMA N/A N/A N/A 38938812
    1238 8wa2:A (3.0) BS24 BMA ? N/A A8J9H7 38552612
    1239 8wa2:B (3.0) BS30 BMA ? N/A A8J9H7 38552612
    1240 8wa2:E (3.0) BS29 BMA ? N/A A8J9H7 38552612
    1241 8wa2:F (3.0) BS31 BMA ? N/A A8J9H7 38552612
    1242 8wbu:A (1.7) BS01 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    1243 8wbu:A (1.7) BS02 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    1244 8wbv:A (1.95) BS02 BMA 5.1.3.11 GO:0005975 ... A4XGA6 N/A
    1245 8x8g:A (2.27) BS01 BMA N/A N/A N/A 38938812
    1246 8zck:B (2.0) BS01 BMA ? N/A P0DOX5 N/A
    1247 8zuh:A (3.2) BS01 BMA N/A N/A Q3SX24 39171510
    1248 8zuh:C (3.2) BS01 BMA N/A N/A Q3SX24 39171510
    1249 9ber:H (4.1) BS01 BMA N/A N/A N/A 39028623
    1250 9brd:a (3.5) BS01 BMA N/A GO:0000220 ... P25286 38900912
    1251 9bry:c (3.6) BS01 BMA N/A N/A Q9R1Q9 38838737
    1252 9cj7:L (3.0) BS01 BMA N/A N/A N/A 39243373
    1253 9ck8:b (3.04) BS01 BMA N/A N/A P08669 39243373
    1254 9iie:A (3.14) BS01 BMA N/A N/A P0DOX5 N/A
    1255 9iie:B (3.14) BS01 BMA N/A N/A P0DOX5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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