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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1255 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 7lae:B (2.97) BS02 BMA 1.11.2.2 GO:0004601 ... P05164 33811992
    1002 7lae:E (2.97) BS01 BMA 1.11.2.2 GO:0004601 ... P05164 33811992
    1003 7lal:B (2.75) BS01 BMA 1.11.2.2 GO:0004601 ... P05164 33811992
    1004 7lbl:A (2.13) BS01 BMA ? N/A Q6PYX1 N/A
    1005 7lf9:B (2.2) BS01 BMA ? N/A Q6MZV7 N/A
    1006 7ll1:K (3.73) BS01 BMA N/A N/A N/A 34731616
    1007 7lr6:A (2.3) BS01 BMA N/A N/A N/A 33764747
    1008 7lr6:B (2.3) BS01 BMA N/A N/A N/A 33764747
    1009 7lr6:C (2.3) BS01 BMA N/A N/A N/A 33764747
    1010 7lr6:D (2.3) BS01 BMA N/A N/A N/A 33764747
    1011 7lr8:A (1.6) BS01 BMA ? N/A F8JJ04 33764747
    1012 7lr8:B (1.6) BS01 BMA ? N/A F8JJ04 33764747
    1013 7lus:A (2.45) BS01 BMA ? N/A P01859 34877503
    1014 7lus:B (2.45) BS01 BMA ? N/A P01859 34877503
    1015 7n4y:A (2.61) BS02 BMA ? GO:0005179 ... A0A4W2CHS8 34726172
    1016 7n4y:B (2.61) BS01 BMA ? GO:0005179 ... A0A4W2CHS8 34726172
    1017 7n65:C (4.15) BS01 BMA N/A N/A N/A 34263727
    1018 7n65:C (4.15) BS03 BMA N/A N/A N/A 34263727
    1019 7n65:G (4.15) BS01 BMA N/A N/A N/A 34263727
    1020 7n65:K (4.15) BS01 BMA N/A N/A N/A 34263727
    1021 7n65:K (4.15) BS03 BMA N/A N/A N/A 34263727
    1022 7ni1:C (2.11) BS04 BMA 1.11.2.2 GO:0004601 ... P05164 36005476
    1023 7ni3:C (2.1) BS04 BMA 1.11.2.2 GO:0004601 ... P05164 36005476
    1024 7nwf:A (2.0) BS01 BMA ? GO:0046872 ... Q8A0N4 34324829
    1025 7nyc:C (3.54) BS01 BMA ? GO:0005576 ... P10643 34667172
    1026 7nyc:D (3.54) BS01 BMA ? GO:0005576 ... P07358 34667172
    1027 7nyc:D (3.54) BS02 BMA ? GO:0005576 ... P07358 34667172
    1028 7nyc:E (3.54) BS01 BMA ? GO:0001848 ... P07357 34667172
    1029 7nyc:E (3.54) BS02 BMA ? GO:0001848 ... P07357 34667172
    1030 7nyc:E (3.54) BS03 BMA ? GO:0001848 ... P07357 34667172
    1031 7nyd:C (3.27) BS01 BMA ? GO:0005576 ... P10643 34667172
    1032 7nyd:D (3.27) BS01 BMA ? GO:0005576 ... P07358 34667172
    1033 7nyd:D (3.27) BS02 BMA ? GO:0005576 ... P07358 34667172
    1034 7nyd:E (3.27) BS01 BMA ? GO:0001848 ... P07357 34667172
    1035 7nzq:AAA (1.57) BS01 BMA 5.3.1.15 GO:0016853 ... A0A256XLS3 34422783
    1036 7o7s:A (4.3) BS01 BMA ? GO:0004866 ... P01023 35500114
    1037 7oix:A (3.6) BS01 BMA ? N/A P60508 35710838
    1038 7p2j:A (1.98) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    1039 7p2j:A (1.98) BS03 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    1040 7p2j:B (1.98) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    1041 7p2j:B (1.98) BS03 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    1042 7p59:A (1.27) BS01 BMA ? N/A B3GVK1 36943866
    1043 7p5a:A (1.95) BS01 BMA ? N/A B3GVK1 36943866
    1044 7p5b:A (1.13) BS01 BMA ? N/A B3GVK1 36943866
    1045 7p5d:A (1.42) BS01 BMA ? N/A B3GVK1 36943866
    1046 7peo:A (4.37) BS02 BMA ? N/A P35828 34800371
    1047 7puk:A (2.69) BS01 BMA 3.2.1.52 GO:0004553 ... Q839P8 35241669
    1048 7puk:C (2.69) BS01 BMA 3.2.1.52 GO:0004553 ... Q839P8 35241669
    1049 7q15:E (3.301) BS01 BMA ? N/A P01857 36241613
    1050 7q15:F (3.301) BS01 BMA ? N/A P01857 36241613
    1051 7q3n:U (7.4) BS03 BMA ? GO:0000922 ... P07911 35273390
    1052 7q3p:A (2.1) BS01 BMA ? N/A P01857 36241613
    1053 7q3p:B (2.1) BS01 BMA ? N/A P01857 36241613
    1054 7q3p:C (2.1) BS01 BMA ? N/A P01857 36241613
    1055 7sgf:a (4.41) BS01 BMA ? GO:0016829 ... P08669 36400021
    1056 7sgf:b (4.41) BS01 BMA ? GO:0016829 ... P08669 36400021
    1057 7sgf:c (4.41) BS01 BMA ? GO:0016829 ... P08669 36400021
    1058 7stz:C (2.95) BS01 BMA ? GO:0005509 ... P12830 36157596
    1059 7stz:C (2.95) BS02 BMA ? GO:0005509 ... P12830 36157596
    1060 7stz:C (2.95) BS03 BMA ? GO:0005509 ... P12830 36157596
    1061 7stz:C (2.95) BS04 BMA ? GO:0005509 ... P12830 36157596
    1062 7stz:D (2.95) BS01 BMA ? GO:0005509 ... P12830 36157596
    1063 7stz:D (2.95) BS02 BMA ? GO:0005509 ... P12830 36157596
    1064 7stz:D (2.95) BS03 BMA ? GO:0005509 ... P12830 36157596
    1065 7stz:D (2.95) BS04 BMA ? GO:0005509 ... P12830 36157596
    1066 7t74:L (3.35) BS01 BMA N/A N/A N/A 36179689
    1067 7t9a:H (3.54) BS01 BMA N/A N/A N/A N/A
    1068 7t9b:H (3.72) BS01 BMA N/A N/A N/A N/A
    1069 7tco:C (4.19) BS01 BMA N/A N/A N/A N/A
    1070 7tco:G (4.19) BS01 BMA N/A N/A N/A N/A
    1071 7tco:O (4.19) BS01 BMA N/A N/A N/A N/A
    1072 7u4e:A (1.54) BS01 BMA 3.2.1.18 GO:0004308 ... H9XI12 36307418
    1073 7u4e:B (1.54) BS01 BMA 3.2.1.18 GO:0004308 ... H9XI12 36307418
    1074 7u4e:C (1.54) BS01 BMA 3.2.1.18 GO:0004308 ... H9XI12 36307418
    1075 7u4e:D (1.54) BS01 BMA 3.2.1.18 GO:0004308 ... H9XI12 36307418
    1076 7uny:C (4.13) BS01 BMA N/A N/A N/A 36396942
    1077 7ur6:D (3.46) BS01 BMA N/A N/A N/A N/A
    1078 7ur6:J (3.46) BS01 BMA N/A N/A N/A N/A
    1079 7uru:B (2.4) BS01 BMA ? N/A P0DOX5 N/A
    1080 7vtl:A (2.07038) BS01 BMA ? N/A A0A8D3WIQ3 N/A
    1081 7vtl:A (2.07038) BS02 BMA ? N/A A0A8D3WIQ3 N/A
    1082 7vtl:A (2.07038) BS03 BMA ? N/A A0A8D3WIQ3 N/A
    1083 7vtl:A (2.07038) BS04 BMA ? N/A A0A8D3WIQ3 N/A
    1084 7vtm:A (2.05153) BS01 BMA ? N/A A0A8D3WIQ3 N/A
    1085 7vtm:A (2.05153) BS02 BMA ? N/A A0A8D3WIQ3 N/A
    1086 7vtm:A (2.05153) BS03 BMA ? N/A A0A8D3WIQ3 N/A
    1087 7vtm:A (2.05153) BS04 BMA ? N/A A0A8D3WIQ3 N/A
    1088 7vtm:A (2.05153) BS05 BMA ? N/A A0A8D3WIQ3 N/A
    1089 7vtm:A (2.05153) BS06 BMA ? N/A A0A8D3WIQ3 N/A
    1090 7w6m:A (4.7) BS01 BMA ? GO:0016020 ... A0A1Y0DD46 35986008
    1091 7w6m:B (4.7) BS01 BMA ? GO:0016020 ... A0A1Y0DD46 35986008
    1092 7w6m:C (4.7) BS02 BMA ? GO:0016020 ... A0A1Y0DD46 35986008
    1093 7w73:A (6.4) BS01 BMA ? GO:0016020 ... A0A1Y0DD46 35986008
    1094 7w73:C (6.4) BS01 BMA ? GO:0016020 ... A0A1Y0DD46 35986008
    1095 7wab:A (1.75) BS01 BMA ? GO:0006508 ... A0A3F3RXI7 34999257
    1096 7y6t:A (4.2) BS01 BMA ? GO:0016020 ... A0A1Y0DD46 35986008
    1097 7ymt:B (6.55) BS01 BMA ? GO:0005515 ... K0BRG7 38428397
    1098 7ymv:B (6.74) BS01 BMA ? GO:0005515 ... K0BRG7 38428397
    1099 7yn0:A (4.1) BS01 BMA ? GO:0005515 ... K0BRG7 38428397
    1100 7yn0:B (4.1) BS01 BMA ? GO:0005515 ... K0BRG7 38428397
    1101 7yn0:C (4.1) BS01 BMA ? GO:0005515 ... K0BRG7 38428397
    1102 8a47:B (2.338) BS01 BMA N/A N/A N/A 36528711
    1103 8a48:A (3.044) BS01 BMA N/A N/A N/A 36528711
    1104 8a49:C (3.45) BS01 BMA 3.2.1.96 GO:0004553 ... Q99Y92 36528711
    1105 8b3b:A (1.949) BS01 BMA ? GO:0042783 ... M4SYA9 36780870
    1106 8b3b:B (1.949) BS01 BMA ? GO:0042783 ... M4SYA9 36780870
    1107 8b3b:C (1.949) BS01 BMA ? GO:0042783 ... M4SYA9 36780870
    1108 8b3b:D (1.949) BS01 BMA ? GO:0042783 ... M4SYA9 36780870
    1109 8b3b:F (1.949) BS01 BMA ? GO:0042783 ... M4SYA9 36780870
    1110 8b3b:G (1.949) BS01 BMA ? GO:0042783 ... M4SYA9 36780870
    1111 8b57:A (2.42) BS01 BMA ? GO:0006508 ... A0A3F3RXI7 38059672
    1112 8bec:A (1.7) BS01 BMA N/A N/A N/A N/A
    1113 8cem:B (3.0) BS01 BMA ? GO:0004866 ... Q2UVX4 16831446
    1114 8czz:K (3.14) BS01 BMA N/A N/A N/A 37872202
    1115 8d0y:D (4.7) BS01 BMA N/A N/A N/A N/A
    1116 8d3a:H (2.9) BS01 BMA N/A N/A N/A 36225920
    1117 8d4r:D (3.81) BS01 BMA N/A N/A N/A N/A
    1118 8d53:D (3.24) BS01 BMA N/A N/A N/A N/A
    1119 8de6:A (3.2) BS01 BMA ? GO:0005579 ... P02748 36639734
    1120 8de6:G (3.2) BS01 BMA ? GO:0005579 ... P02748 36639734
    1121 8de6:G (3.2) BS02 BMA ? GO:0005579 ... P02748 36639734
    1122 8der:L (3.3) BS01 BMA N/A N/A N/A 37295404
    1123 8din:A (2.5) BS01 BMA ? N/A P01857 36814926
    1124 8din:B (2.5) BS01 BMA ? N/A P01857 36814926
    1125 8dir:A (2.3) BS01 BMA ? N/A P01857 36814926
    1126 8dir:B (2.3) BS01 BMA ? N/A P01857 36814926
    1127 8dj7:B (2.39) BS01 BMA ? N/A P01857 36814926
    1128 8dok:C (3.2) BS01 BMA N/A N/A N/A 37872202
    1129 8dok:D (3.2) BS01 BMA N/A N/A N/A 37872202
    1130 8dok:G (3.2) BS01 BMA N/A N/A N/A 37872202
    1131 8dok:K (3.2) BS01 BMA N/A N/A N/A 37872202
    1132 8dok:L (3.2) BS01 BMA N/A N/A N/A 37872202
    1133 8dp1:N (3.46) BS01 BMA N/A N/A N/A N/A
    1134 8dp1:R (3.46) BS01 BMA N/A N/A N/A N/A
    1135 8dvd:H (4.12) BS01 BMA N/A N/A N/A 36344847
    1136 8e56:F (2.8) BS01 BMA ? N/A P13806 36417914
    1137 8f6p:A (3.2) BS01 BMA ? GO:0001518 ... P15389
    P42212    		 N/A
    1138 8f8w:A (2.71) BS01 BMA ? N/A Q6MZV7 37202422
    1139 8f8x:A (2.6) BS01 BMA ? N/A Q6MZV7 37202422
    1140 8f8x:B (2.6) BS01 BMA ? N/A Q6MZV7 37202422
    1141 8fcz:C (3.7) BS01 BMA N/A N/A N/A 37626045
    1142 8fd0:C (3.71) BS01 BMA N/A N/A N/A 37626045
    1143 8fd0:D (3.71) BS01 BMA N/A N/A N/A 37626045
    1144 8fd1:C (4.25) BS01 BMA N/A N/A N/A 37626045
    1145 8fhd:A (3.1) BS01 BMA ? GO:0001508 ... Q9UQD0 36696443
    1146 8flw:H (3.58) BS01 BMA N/A N/A N/A 37436900
    1147 8flw:L (3.58) BS01 BMA N/A N/A N/A 37436900
    1148 8fr7:A (3.39) BS01 BMA ? GO:0016020 ... Q6Q1S2 N/A
    1149 8fr7:B (3.39) BS01 BMA ? GO:0016020 ... Q6Q1S2 N/A
    1150 8fr7:C (3.39) BS01 BMA ? GO:0016020 ... Q6Q1S2 N/A
    1151 8g0m:B (2.25) BS01 BMA N/A N/A N/A 37598178
    1152 8g30:M (3.1) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1153 8g30:N (3.1) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1154 8g30:O (3.1) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1155 8g30:P (3.1) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1156 8g3m:G (3.0) BS02 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1157 8g3m:J (3.0) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1158 8g3m:K (3.0) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1159 8g3m:L (3.0) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1160 8g3n:G (2.9) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1161 8g3n:J (2.9) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1162 8g3n:K (2.9) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1163 8g3n:L (2.9) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1164 8g3o:B (3.1) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1165 8g3o:G (3.1) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1166 8g3o:H (3.1) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1167 8g3o:J (3.1) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1168 8g3p:A (2.5) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1169 8g3p:B (2.5) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1170 8g3p:D (2.5) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1171 8g3p:E (2.5) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1172 8g3q:E (2.3) BS01 BMA 3.2.1.18 GO:0004308 ... V9SU56 37258672
    1173 8g3q:F (2.3) BS01 BMA 3.2.1.18 GO:0004308 ... V9SU56 37258672
    1174 8g3q:G (2.3) BS01 BMA 3.2.1.18 GO:0004308 ... V9SU56 37258672
    1175 8g3q:H (2.3) BS01 BMA 3.2.1.18 GO:0004308 ... V9SU56 37258672
    1176 8g3r:E (2.3) BS02 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1177 8g3r:F (2.3) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1178 8g3r:G (2.3) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1179 8g3r:H (2.3) BS01 BMA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    1180 8g3v:G (2.2) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1181 8g3v:H (2.2) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1182 8g3v:I (2.2) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1183 8g3v:J (2.2) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1184 8g40:G (2.8) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1185 8g40:H (2.8) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1186 8g40:I (2.8) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1187 8g40:J (2.8) BS01 BMA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    1188 8gpi:A (3.0) BS01 BMA N/A N/A N/A 37542068
    1189 8gpi:D (3.0) BS01 BMA N/A N/A N/A 37542068
    1190 8gpi:H (3.0) BS01 BMA N/A N/A N/A 37542068
    1191 8gpj:A (3.5) BS01 BMA N/A N/A N/A 37542068
    1192 8gpj:D (3.5) BS01 BMA N/A N/A N/A 37542068
    1193 8gpj:H (3.5) BS01 BMA N/A N/A N/A 37542068
    1194 8idp:B (1.8) BS01 BMA ? GO:0004348 ... A0A0B8MZ29 37144255
    1195 8idp:D (1.8) BS01 BMA ? GO:0004348 ... A0A0B8MZ29 37144255
    1196 8iq9:A (1.58) BS07 BMA ? N/A A0A6M3YLW2 38349137
    1197 8iq9:B (1.58) BS07 BMA ? N/A A0A6M3YLW2 38349137
    1198 8iq9:C (1.58) BS04 BMA ? N/A A0A6M3YLW2 38349137
    1199 8jtd:J (4.9) BS01 BMA N/A N/A N/A 38665238
    1200 8jtm:J (5.14) BS01 BMA N/A N/A N/A 38665238
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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