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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1255 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 6fuv:A (2.001) BS03 BMA ? N/A A0A4V8GZV8 30947380
    802 6g1e:A (1.88) BS01 BMA ? N/A P01857
    P01860    		 32404368
    803 6g1e:B (1.88) BS01 BMA ? N/A P0DOX5 32404368
    804 6gfe:H (1.8) BS01 BMA N/A N/A N/A 31023536
    805 6gfe:K (1.8) BS01 BMA N/A N/A N/A 31023536
    806 6hf4:A (1.781) BS01 BMA N/A GO:0004553 ... N/A 31000630
    807 6hfy:A (1.65) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    808 6hfy:B (1.65) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    809 6hfy:C (1.65) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    810 6hfy:D (1.65) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    811 6hg5:A (1.6) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    812 6hg5:B (1.6) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    813 6hg5:C (1.6) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    814 6hg5:D (1.6) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    815 6hgb:A (1.5) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    816 6hgb:B (1.5) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    817 6hgb:C (1.5) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    818 6hgb:D (1.5) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    819 6hh9:A (2.4) BS01 BMA ? GO:0016787 ... C7G6F8 32170022
    820 6hh9:A (2.4) BS02 BMA ? GO:0016787 ... C7G6F8 32170022
    821 6hh9:A (2.4) BS03 BMA ? GO:0016787 ... C7G6F8 32170022
    822 6hh9:B (2.4) BS01 BMA ? GO:0016787 ... C7G6F8 32170022
    823 6hh9:B (2.4) BS02 BMA ? GO:0016787 ... C7G6F8 32170022
    824 6hh9:B (2.4) BS03 BMA ? GO:0016787 ... C7G6F8 32170022
    825 6hh9:C (2.4) BS01 BMA ? GO:0016787 ... C7G6F8 32170022
    826 6hh9:C (2.4) BS02 BMA ? GO:0016787 ... C7G6F8 32170022
    827 6hh9:C (2.4) BS03 BMA ? GO:0016787 ... C7G6F8 32170022
    828 6hh9:D (2.4) BS01 BMA ? GO:0016787 ... C7G6F8 32170022
    829 6hh9:D (2.4) BS02 BMA ? GO:0016787 ... C7G6F8 32170022
    830 6hh9:D (2.4) BS03 BMA ? GO:0016787 ... C7G6F8 32170022
    831 6hpf:A (1.36) BS01 BMA 3.2.1.78 GO:0004553 ... A0A3G4RHU4 30783168
    832 6i5r:A (1.6) BS01 BMA ? GO:0046872 ... A0A4V8GZY6 30947380
    833 6i5r:A (1.6) BS02 BMA ? GO:0046872 ... A0A4V8GZY6 30947380
    834 6i5v:A (2.01) BS01 BMA ? GO:0046872 ... A0A4V8GZY7 30947380
    835 6i5v:A (2.01) BS02 BMA ? GO:0046872 ... A0A4V8GZY7 30947380
    836 6i5v:A (2.01) BS03 BMA ? GO:0046872 ... A0A4V8GZY7 30947380
    837 6i5w:A (1.9) BS01 BMA ? GO:0046872 ... A0A4V8GZY8 30947380
    838 6i5w:A (1.9) BS02 BMA ? GO:0046872 ... A0A4V8GZY8 30947380
    839 6i5w:A (1.9) BS03 BMA ? GO:0046872 ... A0A4V8GZY8 30947380
    840 6i5w:A (1.9) BS04 BMA ? GO:0046872 ... A0A4V8GZY8 30947380
    841 6i5w:A (1.9) BS05 BMA ? GO:0046872 ... A0A4V8GZY8 30947380
    842 6ieq:D (3.9) BS01 BMA N/A N/A N/A 31142746
    843 6ifj:A (2.4) BS02 BMA ? N/A P0DOX5 N/A
    844 6ifj:B (2.4) BS02 BMA ? N/A P0DOX5 N/A
    845 6iqg:A (2.998) BS02 BMA ? N/A P0DOX5 30606013
    846 6jbs:C (2.4) BS01 BMA 3.2.1.21 GO:0004553 ... G8GLP2 31925310
    847 6ka7:D (3.0) BS01 BMA ? N/A P0DOX5 N/A
    848 6kj0:A (2.27) BS01 BMA 3.2.1.21 GO:0004553 ... G8GLP2 31925310
    849 6l6a:A (1.81) BS01 BMA ? GO:0002667 ... Q05315 32081418
    850 6lxj:A (2.903) BS01 BMA 3.2.1.18 GO:0004308 ... A0A024E1X5 33024040
    851 6lxj:B (2.903) BS01 BMA 3.2.1.18 GO:0004308 ... A0A024E1X5 33024040
    852 6lxj:C (2.903) BS01 BMA 3.2.1.18 GO:0004308 ... A0A024E1X5 33024040
    853 6lxj:D (2.903) BS01 BMA 3.2.1.18 GO:0004308 ... A0A024E1X5 33024040
    854 6mar:H (4.5) BS02 BMA N/A N/A N/A 30209313
    855 6mar:M (4.5) BS02 BMA N/A N/A N/A 30209313
    856 6mco:D (3.526) BS01 BMA N/A N/A N/A 30770829
    857 6mco:E (3.526) BS01 BMA N/A N/A N/A 30770829
    858 6mds:A (2.5) BS01 BMA 3.2.1.96 GO:0004553 ... T1WGN1 30937380
    859 6mds:B (2.5) BS01 BMA 3.2.1.96 GO:0004553 ... T1WGN1 30937380
    860 6mdv:A (2.5) BS01 BMA 3.2.1.96 GO:0004553 ... T1WGN1 30937380
    861 6mdv:B (2.5) BS01 BMA 3.2.1.96 GO:0004553 ... T1WGN1 30937380
    862 6mj3:D (3.8) BS01 BMA ? N/A F6RL33 36131913
    863 6msu:A (3.11) BS02 BMA ? GO:0001525 ... P06756 31353240
    864 6mtj:D (2.336) BS01 BMA N/A N/A N/A 30604750
    865 6mu6:D (2.551) BS01 BMA N/A N/A N/A 30604750
    866 6mu7:D (2.501) BS01 BMA N/A N/A N/A 30604750
    867 6n4d:C (1.8) BS01 BMA 3.2.1.18 GO:0004308 ... A0A0H3YBU9 28934454
    868 6n4d:D (1.8) BS01 BMA 3.2.1.18 GO:0004308 ... A0A0H3YBU9 28934454
    869 6n9t:A (2.576) BS02 BMA ? N/A Q6MZV7 30566343
    870 6n9t:B (2.576) BS02 BMA ? N/A Q6MZV7 30566343
    871 6nnf:D (2.762) BS01 BMA N/A N/A N/A 30760721
    872 6nnj:D (2.6) BS01 BMA N/A N/A N/A 30760721
    873 6nqd:C (3.9) BS01 BMA ? N/A S6B2A6 30787293
    874 6nqd:G (3.9) BS01 BMA ? N/A S6B2A6 30787293
    875 6nqd:K (3.9) BS01 BMA ? N/A S6B2A6 30787293
    876 6ojp:A (2.17) BS02 BMA ? N/A P11609 31391251
    877 6opa:K (4.084) BS01 BMA N/A N/A N/A 32518821
    878 6ot1:F (3.5) BS01 BMA N/A N/A N/A 31348886
    879 6ot1:Q (3.5) BS01 BMA N/A N/A N/A 31348886
    880 6ot1:m (3.5) BS01 BMA N/A N/A N/A 31348886
    881 6ous:N (3.4) BS01 BMA N/A N/A N/A 31515478
    882 6p6d:A (2.31) BS01 BMA ? N/A P0DOX5 31640157
    883 6p6d:B (2.31) BS01 BMA ? N/A P0DOX5 31640157
    884 6pwu:H (6.2) BS02 BMA N/A N/A N/A 31931014
    885 6pzw:A (3.0) BS01 BMA 3.2.1.18 GO:0004308 ... S5MF06 31757767
    886 6pzw:B (3.0) BS01 BMA 3.2.1.18 GO:0004308 ... S5MF06 31757767
    887 6pzw:C (3.0) BS01 BMA 3.2.1.18 GO:0004308 ... S5MF06 31757767
    888 6pzw:D (3.0) BS01 BMA 3.2.1.18 GO:0004308 ... S5MF06 31757767
    889 6q4y:A (1.7) BS01 BMA ? N/A E9AND8 31513773
    890 6q4y:B (1.7) BS01 BMA ? N/A E9AND8 31513773
    891 6q4z:A (1.55) BS02 BMA ? N/A E9AND8 31513773
    892 6q4z:B (1.55) BS02 BMA ? N/A E9AND8 31513773
    893 6ry5:A (1.3) BS01 BMA 3.2.1.101 GO:0005975 ... G0S3F2 32839341
    894 6s5a:A (1.72) BS01 BMA N/A N/A N/A 31504896
    895 6s5a:D (1.72) BS01 BMA N/A N/A N/A 31504896
    896 6s99:A (2.649) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    897 6s99:A (2.649) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    898 6s99:A (2.649) BS04 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    899 6s99:B (2.649) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    900 6s99:B (2.649) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    901 6s99:B (2.649) BS04 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    902 6s99:C (2.649) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    903 6s99:C (2.649) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    904 6s99:C (2.649) BS03 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    905 6s99:D (2.649) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    906 6s99:D (2.649) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    907 6s99:D (2.649) BS04 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    908 6s99:E (2.649) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    909 6s99:E (2.649) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    910 6s99:E (2.649) BS04 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    911 6s99:F (2.649) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    912 6s99:F (2.649) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    913 6s99:F (2.649) BS03 BMA ? GO:0030246 ... A0A0S4TLR1 34432924
    914 6t72:A (3.7) BS02 BMA ? N/A P35828 31883796
    915 6t8k:A (2.0) BS01 BMA ? GO:0046872 ... Q8A0N4 32060313
    916 6t8k:B (2.0) BS01 BMA ? GO:0046872 ... Q8A0N4 32060313
    917 6t8l:A (1.7) BS01 BMA ? GO:0046872 ... Q8A0N4 32060313
    918 6tcv:B (1.311) BS01 BMA ? GO:0046872 ... Q8A0N4 32060313
    919 6tcw:A (1.599) BS01 BMA ? GO:0046872 ... Q8A0N4 32060313
    920 6ugw:A (2.0) BS01 BMA ? N/A P0DOX5 31650490
    921 6ugx:A (2.1) BS01 BMA ? N/A P0DOX5 31650490
    922 6ugy:A (2.1) BS01 BMA ? N/A P0DOX5 31650490
    923 6ulc:H (4.6) BS02 BMA N/A N/A N/A 31931014
    924 6um7:C (3.5) BS01 BMA N/A N/A N/A 31806786
    925 6um7:G (3.5) BS01 BMA N/A N/A N/A 31806786
    926 6um7:K (3.5) BS01 BMA N/A N/A N/A 31806786
    927 6uqc:C (1.87) BS01 BMA ? N/A P01865 31856660
    928 6uqc:D (1.87) BS01 BMA ? N/A P01865 31856660
    929 6uqc:F (1.87) BS01 BMA ? N/A P01865 31856660
    930 6utk:H (3.8) BS01 BMA N/A N/A N/A N/A
    931 6v6w:F (6.5) BS01 BMA N/A N/A N/A N/A
    932 6v6w:I (6.5) BS01 BMA N/A N/A N/A N/A
    933 6vsl:A (2.1) BS01 BMA ? N/A P0DOX5 34232070
    934 6vsl:B (2.1) BS01 BMA ? N/A P0DOX5 34232070
    935 6vsz:A (2.6) BS01 BMA ? N/A P0DOX5 34232070
    936 6vsz:B (2.6) BS01 BMA ? N/A P0DOX5 34232070
    937 6vw1:E (2.68) BS01 BMA ? N/A P0DTC2
    P59594    		 32225175
    938 6wib:A (2.55) BS01 BMA ? N/A P01861 34497355
    939 6wix:D (2.67) BS01 BMA N/A N/A N/A 33238130
    940 6wm2:R (3.1) BS02 BMA ? GO:0000220 ... Q93050 33065002
    941 6wna:H (2.4) BS01 BMA ? N/A P01861 34497355
    942 6wyd:E (2.55) BS01 BMA 1.11.2.2 GO:0004601 ... P05164 33007547
    943 6wzt:A (4.7) BS01 BMA ? GO:0019031 ... A0A075EV12 33658355
    944 6x7x:A (1.3) BS08 BMA ? N/A A1YIY3 33824212
    945 6xrt:H (3.9) BS02 BMA N/A N/A N/A 33214287
    946 6xys:A (2.46) BS01 BMA 3.1.1.7 GO:0001507 ... P07140 32155891
    947 6y5j:E (5.6) BS01 BMA ? GO:0019031 ... P03437 32461688
    948 6ysc:A (2.05) BS01 BMA ? N/A P0DOX5 33009381
    949 6ysc:B (2.05) BS01 BMA ? N/A P0DOX5 33009381
    950 6yt7:A (1.55) BS01 BMA ? N/A P0DOX5 33009381
    951 6z7p:A (4.8) BS02 BMA ? GO:0005509 ... P35828 31883796
    952 6z8g:A (1.56) BS01 BMA ? GO:0042783 ... Q58NS4 33462435
    953 6z8g:B (1.56) BS01 BMA ? GO:0042783 ... Q58NS4 33462435
    954 6z8h:A (1.38) BS01 BMA ? GO:0042783 ... Q58NS4 33462435
    955 6z8h:B (1.38) BS01 BMA ? GO:0042783 ... Q58NS4 33462435
    956 7c3c:A (1.301) BS02 BMA ? N/A G1XA82 32698064
    957 7c3c:B (1.301) BS01 BMA ? N/A G1XA82 32698064
    958 7c3c:B (1.301) BS02 BMA ? N/A G1XA82 32698064
    959 7d3f:A (2.6) BS01 BMA 1.11.1.-
    1.6.3.1    		 GO:0004601 ... Q9NRD9 33420071
    960 7d3f:C (2.6) BS01 BMA 1.11.1.-
    1.6.3.1    		 GO:0004601 ... Q9NRD9 33420071
    961 7dc4:A (0.95) BS01 BMA N/A N/A N/A 33895142
    962 7dc4:A (0.95) BS04 BMA N/A N/A N/A 33895142
    963 7dc4:B (0.95) BS01 BMA N/A N/A N/A 33895142
    964 7dc4:B (0.95) BS04 BMA N/A N/A N/A 33895142
    965 7dvj:A (1.65) BS01 BMA ? N/A A0A140EH91 33865894
    966 7dvj:A (1.65) BS02 BMA ? N/A A0A140EH91 33865894
    967 7dvj:B (1.65) BS01 BMA ? N/A A0A140EH91 33865894
    968 7dvj:B (1.65) BS02 BMA ? N/A A0A140EH91 33865894
    969 7dw8:A (1.9) BS01 BMA ? N/A A0A140EH91 33865894
    970 7dw8:A (1.9) BS02 BMA ? N/A A0A140EH91 33865894
    971 7dw8:B (1.9) BS01 BMA ? N/A A0A140EH91 33865894
    972 7dw8:B (1.9) BS02 BMA ? N/A A0A140EH91 33865894
    973 7dwa:A (1.62) BS02 BMA ? N/A A0A140EH91 33865894
    974 7dwa:B (1.62) BS02 BMA ? N/A A0A140EH91 33865894
    975 7eee:A (1.66079) BS01 BMA N/A GO:0000272 ... N/A 34329700
    976 7eee:A (1.66079) BS02 BMA N/A GO:0000272 ... N/A 34329700
    977 7eej:A (1.47798) BS01 BMA N/A GO:0000272 ... N/A 34329700
    978 7eej:A (1.47798) BS02 BMA N/A GO:0000272 ... N/A 34329700
    979 7eej:A (1.47798) BS03 BMA N/A GO:0000272 ... N/A 34329700
    980 7eej:A (1.47798) BS04 BMA N/A GO:0000272 ... N/A 34329700
    981 7exo:A (1.75) BS01 BMA ? N/A Q58791 36301308
    982 7ey2:A (2.43) BS01 BMA 3.2.1.21 GO:0004553 ... G8GLP2 N/A
    983 7f95:B () BS03 BMA N/A N/A N/A N/A
    984 7fe2:A (1.75) BS01 BMA ? GO:0000224 ... Q832K9 35049087
    985 7fe2:B (1.75) BS01 BMA ? GO:0000224 ... Q832K9 35049087
    986 7fe2:C (1.75) BS01 BMA ? GO:0000224 ... Q832K9 35049087
    987 7fe2:D (1.75) BS01 BMA ? GO:0000224 ... Q832K9 35049087
    988 7jks:L (3.45) BS01 BMA N/A N/A N/A 33453152
    989 7kcz:A (3.15) BS01 BMA ? N/A F6RL33 36131913
    990 7kcz:B (3.15) BS01 BMA ? N/A F6RL33 36131913
    991 7kcz:D (3.15) BS01 BMA ? N/A F6RL33 36131913
    992 7l02:M (3.2) BS01 BMA N/A N/A N/A 34019795
    993 7l02:M (3.2) BS02 BMA N/A N/A N/A 34019795
    994 7l06:G (3.3) BS01 BMA N/A N/A N/A 34019795
    995 7l06:M (3.3) BS01 BMA N/A N/A N/A 34019795
    996 7l06:M (3.3) BS02 BMA N/A N/A N/A 34019795
    997 7l09:M (3.1) BS01 BMA N/A N/A N/A 34019795
    998 7l09:M (3.1) BS02 BMA N/A N/A N/A 34019795
    999 7l56:F (3.6) BS01 BMA N/A N/A N/A 33794145
    1000 7l56:H (3.6) BS01 BMA N/A N/A N/A 33794145
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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