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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1255 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 5lg1:A (2.7) BS01 BMA ? N/A P01861 27915153
    602 5lg1:B (2.7) BS01 BMA ? N/A P01861 27915153
    603 5lhd:D (2.6) BS01 BMA 3.4.11.2 GO:0001525 ... P15144 28393915
    604 5m3v:A (1.97) BS01 BMA ? N/A P01857
    P01860    		 28450393
    605 5m7i:A (2.1) BS01 BMA ? GO:0005975 ... Q8XNB2 28026180
    606 5mh1:A (1.1) BS01 BMA ? GO:0046872 ... K1QRB6 29238341
    607 5n6u:A (3.08) BS01 BMA 3.2.1.25 GO:0004553 ... B5YAN4 28385558
    608 5n6u:B (3.08) BS01 BMA 3.2.1.25 GO:0004553 ... B5YAN4 28385558
    609 5n6u:C (3.08) BS01 BMA 3.2.1.25 GO:0004553 ... B5YAN4 28385558
    610 5n6u:D (3.08) BS01 BMA 3.2.1.25 GO:0004553 ... B5YAN4 28385558
    611 5nbs:A (2.25) BS02 BMA 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    612 5nkw:A (1.48) BS02 BMA 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    613 5nkw:A (1.48) BS07 BMA 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 29057953
    614 5no7:A (3.01) BS01 BMA ? N/A A0A2I6QB00 29377002
    615 5nsc:B (2.3) BS01 BMA ? N/A Q6MZV7 28655766
    616 5nsg:A (2.22) BS01 BMA ? N/A Q6MZV7 28655766
    617 5o4e:A (2.15) BS01 BMA ? N/A P0DOX5 28816592
    618 5o4e:B (2.15) BS01 BMA ? N/A P0DOX5 28816592
    619 5o4e:D (2.15) BS01 BMA ? N/A P0DOX5 28816592
    620 5oce:A (2.41) BS01 BMA 2.3.1.265 GO:0005886 ... A0QWG5 29185694
    621 5qj2:B (2.82) BS03 BMA 1.11.2.2 GO:0004601 ... P05164 30613322
    622 5swa:A (3.0) BS01 BMA N/A N/A N/A 28056108
    623 5swa:B (3.0) BS01 BMA N/A N/A N/A 28056108
    624 5swb:A (1.73) BS01 BMA N/A N/A N/A 28056108
    625 5swb:C (1.73) BS01 BMA N/A N/A N/A 28056108
    626 5swb:D (1.73) BS01 BMA N/A N/A N/A 28056108
    627 5swb:G (1.73) BS01 BMA N/A N/A N/A 28056108
    628 5swi:A (2.15) BS01 BMA N/A GO:0005975 ... N/A 28056108
    629 5swi:B (2.15) BS02 BMA N/A GO:0005975 ... N/A 28056108
    630 5swi:C (2.15) BS01 BMA N/A GO:0005975 ... N/A 28056108
    631 5swi:D (2.15) BS01 BMA N/A GO:0005975 ... N/A 28056108
    632 5t3x:H (3.9) BS01 BMA N/A N/A N/A 27617431
    633 5tps:A (2.7) BS01 BMA ? N/A P01857 N/A
    634 5u4w:B (9.1) BS01 BMA 3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A A0A0B4L3F2 28067914
    635 5u4w:D (9.1) BS01 BMA 3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A A0A0B4L3F2 28067914
    636 5u4w:F (9.1) BS01 BMA 3.4.21.91
    3.6.1.15
    3.6.4.13    		 N/A A0A0B4L3F2 28067914
    637 5u7m:D (3.025) BS01 BMA N/A N/A N/A 28825711
    638 5u7o:D (3.031) BS01 BMA N/A N/A N/A 28825711
    639 5u81:A (1.4) BS01 BMA 3.5.1.23 GO:0005576 ... G5AP74 29692406
    640 5ubx:B (2.7) BS01 BMA ? N/A P01867 28898162
    641 5udc:H (3.45) BS01 BMA N/A N/A N/A 28469033
    642 5utf:D (3.503) BS01 BMA N/A N/A N/A 28275193
    643 5v4e:G (3.216) BS01 BMA ? N/A P01857 28604720
    644 5v6f:A (1.5) BS01 BMA ? N/A Q9KTH2 29432487
    645 5v8l:J (4.3) BS01 BMA N/A N/A N/A 28423342
    646 5vaa:A (1.55) BS01 BMA ? N/A P01863 28559564
    647 5vcs:A (2.799) BS01 BMA 2.4.1.143 GO:0000139 ... Q10469 29666272
    648 5vcs:B (2.799) BS01 BMA 2.4.1.143 GO:0000139 ... Q10469 29666272
    649 5vgp:A (2.116) BS01 BMA ? N/A Q6PYX1 30198883
    650 5vgp:B (2.116) BS01 BMA ? N/A Q6PYX1 30198883
    651 5vh5:A (1.75) BS01 BMA N/A N/A N/A 28421849
    652 5vme:A (3.1) BS01 BMA ? N/A Q6MZV7 28758875
    653 5vme:B (3.1) BS01 BMA ? N/A Q6MZV7 28758875
    654 5vu0:B (2.26) BS01 BMA ? N/A P0DOX5 30016589
    655 5w38:A (1.8) BS01 BMA ? N/A P01860 29031045
    656 5w5l:A (1.9) BS01 BMA ? N/A P0DOX5 31548527
    657 5w5l:B (1.9) BS01 BMA ? N/A P0DOX5 31548527
    658 5w5m:A (1.9) BS01 BMA ? N/A P01861 31548527
    659 5w5m:B (1.9) BS01 BMA ? N/A P01861 31548527
    660 5w5n:A (1.85) BS01 BMA ? N/A P01861 31548527
    661 5w5n:B (1.85) BS01 BMA ? N/A P01861 31548527
    662 5wvp:A (2.294) BS01 BMA 3.2.1.21 GO:0004553 ... A0A1P8VKA0 N/A
    663 5xbm:F (3.501) BS01 BMA ? GO:0005044 ... Q14108 28447294
    664 5xje:B (2.4) BS01 BMA ? N/A P0DOX5 29062024
    665 5xmh:A (2.8) BS01 BMA ? N/A P0DOX5 29523691
    666 5xmh:B (2.8) BS01 BMA ? N/A P0DOX5 29523691
    667 5xtt:A (1.75) BS01 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    668 5xtt:A (1.75) BS02 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    669 5xtt:A (1.75) BS03 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    670 5xtt:B (1.75) BS01 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    671 5xtt:B (1.75) BS02 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    672 5xtt:B (1.75) BS03 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    673 5xu5:A (2.02) BS01 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    674 5xu5:A (2.02) BS02 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    675 5xu5:A (2.02) BS03 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    676 5xu5:B (2.02) BS01 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    677 5xu5:B (2.02) BS02 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    678 5xu5:B (2.02) BS03 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    679 5xu5:B (2.02) BS04 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    680 5xug:A (2.31) BS01 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    681 5xug:A (2.31) BS02 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    682 5xug:A (2.31) BS03 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    683 5xug:B (2.31) BS01 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    684 5xug:B (2.31) BS02 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    685 5xug:B (2.31) BS03 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    686 5xug:B (2.31) BS04 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    687 5xug:B (2.31) BS05 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    688 5xul:A (1.98) BS01 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    689 5xul:A (1.98) BS02 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    690 5xul:A (1.98) BS03 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    691 5xul:A (1.98) BS04 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    692 5xul:A (1.98) BS05 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    693 5xul:A (1.98) BS06 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    694 5xul:B (1.98) BS01 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    695 5xul:B (1.98) BS02 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    696 5xul:B (1.98) BS03 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    697 5xul:B (1.98) BS04 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    698 5xul:B (1.98) BS05 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    699 5xul:B (1.98) BS06 BMA 3.2.1.78 GO:0016798 ... A0A2U8ZTY7 29550433
    700 5y56:B (2.653) BS01 BMA ? N/A P0DOX5 28878018
    701 5yc5:A (2.71) BS01 BMA ? N/A P0DOX5 29500371
    702 5yc5:B (2.71) BS01 BMA ? N/A P0DOX5 29500371
    703 5yli:A (2.37) BS01 BMA ? N/A K0J0N5 29871927
    704 5yli:A (2.37) BS02 BMA ? N/A K0J0N5 29871927
    705 5yli:B (2.37) BS01 BMA ? N/A K0J0N5 29871927
    706 5yli:B (2.37) BS02 BMA ? N/A K0J0N5 29871927
    707 5ylk:A (2.09) BS01 BMA ? N/A K0J0N5 29871927
    708 5ylk:A (2.09) BS02 BMA ? N/A K0J0N5 29871927
    709 5ylk:A (2.09) BS03 BMA ? N/A K0J0N5 29871927
    710 5ylk:A (2.09) BS04 BMA ? N/A K0J0N5 29871927
    711 5ylk:B (2.09) BS01 BMA ? N/A K0J0N5 29871927
    712 5ylk:B (2.09) BS02 BMA ? N/A K0J0N5 29871927
    713 5ylk:B (2.09) BS03 BMA ? N/A K0J0N5 29871927
    714 5yll:A (1.81) BS01 BMA ? N/A K0J0N5 29871927
    715 5yll:A (1.81) BS02 BMA ? N/A K0J0N5 29871927
    716 5yll:B (1.81) BS01 BMA ? N/A K0J0N5 29871927
    717 5yll:B (1.81) BS02 BMA ? N/A K0J0N5 29871927
    718 5z4t:A (1.68) BS01 BMA ? N/A K0J0N5 29871927
    719 5z4t:A (1.68) BS02 BMA ? N/A K0J0N5 29871927
    720 5z4t:B (1.68) BS01 BMA ? N/A K0J0N5 29871927
    721 5z4t:B (1.68) BS02 BMA ? N/A K0J0N5 29871927
    722 6aq5:A (2.194) BS01 BMA ? GO:0030246 ... Q6YD91 N/A
    723 6aq5:B (2.194) BS01 BMA ? GO:0030246 ... Q6YD91 N/A
    724 6b3m:M (3.92) BS02 BMA N/A N/A N/A 29899095
    725 6b9o:A (1.841) BS01 BMA 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    726 6b9o:B (1.841) BS02 BMA 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    727 6b9p:A (1.996) BS01 BMA 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    728 6b9p:B (1.996) BS02 BMA 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    729 6bhq:B (2.05) BS01 BMA ? N/A Q58E56 29408873
    730 6bye:A (2.126) BS01 BMA N/A GO:0004553 ... N/A 29997257
    731 6bye:B (2.126) BS01 BMA N/A GO:0004553 ... N/A 29997257
    732 6byg:A (1.999) BS01 BMA N/A GO:0004553 ... N/A 29997257
    733 6byg:B (1.999) BS01 BMA N/A GO:0004553 ... N/A 29997257
    734 6byi:A (2.2) BS01 BMA N/A GO:0004553 ... N/A 29997257
    735 6byi:A (2.2) BS02 BMA N/A GO:0004553 ... N/A 29997257
    736 6byi:A (2.2) BS03 BMA N/A GO:0004553 ... N/A 29997257
    737 6byi:B (2.2) BS01 BMA N/A GO:0004553 ... N/A 29997257
    738 6bz4:A (2.4) BS01 BMA ? N/A P0DOX5 29794155
    739 6bz4:B (2.4) BS01 BMA ? N/A P0DOX5 29794155
    740 6c26:B (3.5) BS01 BMA 2.4.99.18 GO:0005789 ... P33767 29466327
    741 6ce0:D (4.602) BS01 BMA N/A N/A N/A 30474059
    742 6chf:B (2.4) BS01 BMA ? N/A Q6MZV7 32209433
    743 6cm3:P (3.54) BS01 BMA N/A N/A N/A 30308160
    744 6cm3:R (3.54) BS01 BMA N/A N/A N/A 30308160
    745 6cm3:T (3.54) BS01 BMA N/A N/A N/A 30308160
    746 6crd:B (2.57) BS01 BMA 3.2.1.18 GO:0004308 ... P03472
    Q54436    		 30713159
    747 6crd:E (2.57) BS01 BMA 3.2.1.18 GO:0004308 ... P03472
    Q54436    		 30713159
    748 6crd:F (2.57) BS01 BMA 3.2.1.18 GO:0004308 ... P03472
    Q54436    		 30713159
    749 6crd:H (2.57) BS01 BMA 3.2.1.18 GO:0004308 ... P03472
    Q54436    		 30713159
    750 6cxo:A (2.2) BS03 BMA ? GO:0001906 ... P06683 30111885
    751 6cxo:B (2.2) BS02 BMA ? GO:0001906 ... P06683 30111885
    752 6d4e:B (2.8) BS01 BMA ? N/A F6RL33 30939981
    753 6d4i:B (2.95) BS01 BMA ? N/A F7H602 30939981
    754 6d4m:A (3.47) BS01 BMA N/A N/A N/A 30939981
    755 6d4n:A (3.25) BS01 BMA N/A N/A N/A 30939981
    756 6d58:A (2.39) BS01 BMA ? N/A P01860 N/A
    757 6d58:B (2.39) BS01 BMA ? N/A P01860 N/A
    758 6ddu:A (2.668) BS03 BMA 3.2.1.25 GO:0004553 ... Q8K2I4 30552791
    759 6dlw:A (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    760 6dlw:B (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    761 6dlw:C (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    762 6dlw:D (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    763 6dlw:E (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    764 6dlw:F (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    765 6dlw:G (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    766 6dlw:H (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    767 6dlw:I (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    768 6dlw:J (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    769 6dlw:K (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    770 6dlw:L (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    771 6dlw:M (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    772 6dlw:N (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    773 6dlw:O (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    774 6dlw:P (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    775 6dlw:Q (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    776 6dlw:R (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    777 6dlw:S (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    778 6dlw:T (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    779 6dlw:U (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    780 6dlw:V (3.9) BS01 BMA ? GO:0001906 ... P02748 30111885
    781 6dru:A (2.7) BS01 BMA 3.2.1.177 GO:0003824 ... A2QTU5 32161692
    782 6eaq:B (2.22) BS01 BMA ? N/A P0DOX5 30361439
    783 6edu:T (4.06) BS01 BMA N/A N/A N/A 30308160
    784 6elc:A (1.41) BS01 BMA ? N/A B3GVK1 29988048
    785 6en3:A (2.903) BS01 BMA 2.3.1.-
    3.4.22.-
    6.3.2.-    		 N/A Q9KS12 29760474
    786 6erc:A (2.50002) BS03 BMA 1.11.1.7 GO:0004601 ... Q6TMK4 29242189
    787 6f2z:A (2.3) BS01 BMA ? N/A P01857 N/A
    788 6f37:A (2.2) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 N/A
    789 6f37:A (2.2) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 N/A
    790 6f37:B (2.2) BS01 BMA ? GO:0030246 ... A0A0S4TLR1 N/A
    791 6f37:B (2.2) BS02 BMA ? GO:0030246 ... A0A0S4TLR1 N/A
    792 6f7k:B (2.1) BS03 BMA ? N/A A0A0C5PVE3 31189652
    793 6f7k:C (2.1) BS02 BMA ? N/A A0A0C5PVE3 31189652
    794 6f7k:F (2.1) BS03 BMA ? N/A A0A0C5PVE3 31189652
    795 6f7k:G (2.1) BS03 BMA ? N/A A0A0C5PVE3 31189652
    796 6fat:B (2.3) BS01 BMA 3.1.1.-
    3.1.1.73    		 GO:0030600 ... A0A1D3S5H0 N/A
    797 6fgo:A (2.5) BS01 BMA ? N/A P0DOX5 29886013
    798 6fgo:C (2.5) BS01 BMA ? N/A P0DOX5 29886013
    799 6fuv:A (2.001) BS01 BMA ? N/A A0A4V8GZV8 30947380
    800 6fuv:A (2.001) BS02 BMA ? N/A A0A4V8GZV8 30947380
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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