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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1255 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 4pft:A (1.747) BS01 BMA ? GO:0015833 ... Q9X0V0 25210043
    402 4pft:A (1.747) BS02 BMA ? GO:0015833 ... Q9X0V0 25210043
    403 4pft:B (1.747) BS01 BMA ? GO:0015833 ... Q9X0V0 25210043
    404 4pft:B (1.747) BS02 BMA ? GO:0015833 ... Q9X0V0 25210043
    405 4pfu:A (2.049) BS01 BMA N/A GO:0043190 ... N/A 25210043
    406 4pfu:A (2.049) BS02 BMA N/A GO:0043190 ... N/A 25210043
    407 4pfu:B (2.049) BS01 BMA N/A GO:0043190 ... N/A 25210043
    408 4pfu:B (2.049) BS02 BMA N/A GO:0043190 ... N/A 25210043
    409 4pfw:A (2.198) BS02 BMA N/A GO:0043190 ... N/A 25210043
    410 4pfw:A (2.198) BS03 BMA N/A GO:0043190 ... N/A 25210043
    411 4pfw:A (2.198) BS04 BMA N/A GO:0043190 ... N/A 25210043
    412 4pfw:B (2.198) BS02 BMA N/A GO:0043190 ... N/A 25210043
    413 4pfw:B (2.198) BS03 BMA N/A GO:0043190 ... N/A 25210043
    414 4pfw:B (2.198) BS04 BMA N/A GO:0043190 ... N/A 25210043
    415 4pfw:B (2.198) BS05 BMA N/A GO:0043190 ... N/A 25210043
    416 4pfy:A (1.5) BS01 BMA ? GO:0015833 ... Q9X0V0 25210043
    417 4pfy:A (1.5) BS02 BMA ? GO:0015833 ... Q9X0V0 25210043
    418 4pfy:A (1.5) BS03 BMA ? GO:0015833 ... Q9X0V0 25210043
    419 4pfy:A (1.5) BS04 BMA ? GO:0015833 ... Q9X0V0 25210043
    420 4pfy:A (1.5) BS05 BMA ? GO:0015833 ... Q9X0V0 25210043
    421 4pfy:A (1.5) BS06 BMA ? GO:0015833 ... Q9X0V0 25210043
    422 4pfy:B (1.5) BS01 BMA ? GO:0015833 ... Q9X0V0 25210043
    423 4pfy:B (1.5) BS02 BMA ? GO:0015833 ... Q9X0V0 25210043
    424 4pfy:B (1.5) BS03 BMA ? GO:0015833 ... Q9X0V0 25210043
    425 4pfy:B (1.5) BS04 BMA ? GO:0015833 ... Q9X0V0 25210043
    426 4pfy:B (1.5) BS05 BMA ? GO:0015833 ... Q9X0V0 25210043
    427 4pfy:B (1.5) BS06 BMA ? GO:0015833 ... Q9X0V0 25210043
    428 4q6y:A (3.0) BS01 BMA ? N/A P01857 25036289
    429 4q6y:B (3.0) BS01 BMA ? N/A P01857 25036289
    430 4q7d:A (2.35) BS01 BMA ? N/A P01857 25036289
    431 4q7d:B (2.35) BS01 BMA ? N/A P01857 25036289
    432 4r9f:A (1.4) BS01 BMA ? N/A L0E2M2 25342756
    433 4r9f:A (1.4) BS02 BMA ? N/A L0E2M2 25342756
    434 4r9g:A (2.2) BS02 BMA ? N/A L0E2M2 25342756
    435 4r9g:A (2.2) BS03 BMA ? N/A L0E2M2 25342756
    436 4r9g:B (2.2) BS02 BMA ? N/A L0E2M2 25342756
    437 4r9g:B (2.2) BS03 BMA ? N/A L0E2M2 25342756
    438 4tkc:A (1.29) BS01 BMA ? GO:0030246 ... I7H471 N/A
    439 4udj:A (1.94) BS02 BMA 2.4.1.- GO:0016740 ... D9ZDQ9 26057673
    440 4udj:B (1.94) BS02 BMA 2.4.1.- GO:0016740 ... D9ZDQ9 26057673
    441 4udj:C (1.94) BS02 BMA 2.4.1.- GO:0016740 ... D9ZDQ9 26057673
    442 4udj:D (1.94) BS02 BMA 2.4.1.- GO:0016740 ... D9ZDQ9 26057673
    443 4udj:E (1.94) BS02 BMA 2.4.1.- GO:0016740 ... D9ZDQ9 26057673
    444 4udj:F (1.94) BS02 BMA 2.4.1.- GO:0016740 ... D9ZDQ9 26057673
    445 4udk:A (1.76) BS02 BMA 2.4.1.- GO:0016740 ... D9ZDQ9 26057673
    446 4udk:B (1.76) BS02 BMA 2.4.1.- GO:0016740 ... D9ZDQ9 26057673
    447 4udk:C (1.76) BS02 BMA 2.4.1.- GO:0016740 ... D9ZDQ9 26057673
    448 4udk:D (1.76) BS02 BMA 2.4.1.- GO:0016740 ... D9ZDQ9 26057673
    449 4udk:E (1.76) BS02 BMA 2.4.1.- GO:0016740 ... D9ZDQ9 26057673
    450 4udk:F (1.76) BS02 BMA 2.4.1.- GO:0016740 ... D9ZDQ9 26057673
    451 4uoj:A (2.5) BS03 BMA 3.2.1.25 GO:0004553 ... A0A075B5H6 24975648
    452 4uoj:B (2.5) BS04 BMA 3.2.1.25 GO:0004553 ... A0A075B5H6 24975648
    453 4ut6:L (3.2) BS01 BMA N/A N/A N/A 25581790
    454 4ut6:M (3.2) BS01 BMA N/A N/A N/A 25581790
    455 4w4n:B (1.8) BS01 BMA ? N/A P01857 25925696
    456 4w4o:A (1.8) BS01 BMA ? N/A P01857 25925696
    457 4w4o:B (1.8) BS01 BMA ? N/A P01857 25925696
    458 4wi2:B (1.9) BS01 BMA ? N/A P01857 N/A
    459 4wi5:B (2.8) BS01 BMA ? N/A P01857 N/A
    460 4wi6:A (2.201) BS01 BMA ? N/A P01857 N/A
    461 4wi6:B (2.201) BS01 BMA ? N/A P01857 N/A
    462 4wi7:B (1.9) BS01 BMA ? N/A P01857 N/A
    463 4wi8:B (2.8) BS01 BMA ? N/A P01857 N/A
    464 4wi9:B (2.65) BS01 BMA ? N/A P01857 N/A
    465 4x4k:A (2.3) BS01 BMA ? GO:0005507 ... H8ZRU2 26625287
    466 4x4m:A (3.485) BS01 BMA ? N/A P01857 25561553
    467 4x4m:B (3.485) BS01 BMA ? N/A P01857 25561553
    468 4x8x:A (2.5) BS01 BMA ? N/A Q0E9H9 27386517
    469 4x99:A (2.498) BS01 BMA ? N/A P01857 25743157
    470 4y7e:A (1.5) BS01 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    471 4y7e:A (1.5) BS02 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    472 4y7e:A (1.5) BS03 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    473 4y7e:A (1.5) BS04 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    474 4y7e:A (1.5) BS05 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    475 4y7e:A (1.5) BS06 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    476 4y7e:A (1.5) BS07 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    477 4y7e:A (1.5) BS08 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    478 4y7e:A (1.5) BS09 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    479 4y7e:A (1.5) BS10 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    480 4y7e:B (1.5) BS01 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    481 4y7e:B (1.5) BS02 BMA 3.2.1.4 GO:0000272 ... F5HR99 26257335
    482 5a7v:A (1.35) BS01 BMA ? GO:0016740 ... Q8A186 26286752
    483 5a7v:B (1.35) BS01 BMA ? GO:0016740 ... Q8A186 26286752
    484 5ab0:A (2.5) BS02 BMA 3.4.11.- GO:0002250 ... Q6P179 26381406
    485 5ab2:A (2.729) BS02 BMA 3.4.11.- GO:0002250 ... Q6P179 26381406
    486 5agd:A (1.2) BS01 BMA 3.2.1.101 GO:0005975 ... Q9Z4P9 25772148
    487 5agd:B (1.2) BS01 BMA 3.2.1.101 GO:0005975 ... Q9Z4P9 25772148
    488 5ayc:A (1.9) BS02 BMA 2.4.1.281 GO:0005975 ... E6UIS7 26913570
    489 5aye:A (2.2) BS01 BMA 2.4.1.319 GO:0016757 ... E6UBR9 26913570
    490 5aye:A (2.2) BS02 BMA 2.4.1.319 GO:0016757 ... E6UBR9 26913570
    491 5aye:B (2.2) BS01 BMA 2.4.1.319 GO:0016757 ... E6UBR9 26913570
    492 5aye:B (2.2) BS02 BMA 2.4.1.319 GO:0016757 ... E6UBR9 26913570
    493 5aye:C (2.2) BS01 BMA 2.4.1.319 GO:0016757 ... E6UBR9 26913570
    494 5aye:C (2.2) BS02 BMA 2.4.1.319 GO:0016757 ... E6UBR9 26913570
    495 5aye:D (2.2) BS01 BMA 2.4.1.319 GO:0016757 ... E6UBR9 26913570
    496 5aye:D (2.2) BS02 BMA 2.4.1.319 GO:0016757 ... E6UBR9 26913570
    497 5aye:E (2.2) BS01 BMA 2.4.1.319 GO:0016757 ... E6UBR9 26913570
    498 5aye:E (2.2) BS02 BMA 2.4.1.319 GO:0016757 ... E6UBR9 26913570
    499 5aye:F (2.2) BS01 BMA 2.4.1.319 GO:0016757 ... E6UBR9 26913570
    500 5aye:F (2.2) BS02 BMA 2.4.1.319 GO:0016757 ... E6UBR9 26913570
    501 5b0r:A (1.8) BS01 BMA 2.4.1.339 GO:0016757 ... Q92DF6 26632508
    502 5b0r:A (1.8) BS02 BMA 2.4.1.339 GO:0016757 ... Q92DF6 26632508
    503 5b0r:B (1.8) BS01 BMA 2.4.1.339 GO:0016757 ... Q92DF6 26632508
    504 5b0r:B (1.8) BS02 BMA 2.4.1.339 GO:0016757 ... Q92DF6 26632508
    505 5b0s:A (2.1) BS02 BMA 2.4.1.339 GO:0016757 ... Q92DF6 26632508
    506 5b0s:A (2.1) BS03 BMA 2.4.1.339 GO:0016757 ... Q92DF6 26632508
    507 5b0s:B (2.1) BS02 BMA 2.4.1.339 GO:0016757 ... Q92DF6 26632508
    508 5b0s:B (2.1) BS03 BMA 2.4.1.339 GO:0016757 ... Q92DF6 26632508
    509 5bw7:B (3.0) BS01 BMA ? N/A P01857 26444434
    510 5c7k:E (4.6019) BS01 BMA ? N/A P01857 26457433
    511 5c7k:F (4.6019) BS01 BMA ? GO:0002250 ... P01834 26457433
    512 5d4q:A (2.39) BS01 BMA ? N/A P01857 26850169
    513 5d4q:B (2.39) BS01 BMA ? N/A P01857 26850169
    514 5d6d:A (3.13) BS01 BMA ? N/A P01857 26850169
    515 5d6d:B (3.13) BS01 BMA ? N/A P01857 26850169
    516 5d9z:A (1.85) BS01 BMA ? N/A R9RL27 N/A
    517 5d9z:B (1.85) BS01 BMA ? N/A R9RL27 N/A
    518 5d9z:B (1.85) BS02 BMA ? N/A R9RL27 N/A
    519 5di8:A (1.9) BS02 BMA ? N/A P01857 26996964
    520 5di8:B (1.9) BS01 BMA ? N/A P01857 26996964
    521 5dj0:A (2.28) BS02 BMA ? N/A P01857 26996964
    522 5dj2:A (2.56) BS02 BMA ? N/A P01857 26996964
    523 5dj8:A (2.4) BS02 BMA ? N/A P01857 26996964
    524 5dja:A (2.9) BS02 BMA ? N/A P01857 26996964
    525 5dja:B (2.9) BS01 BMA ? N/A P01857 26996964
    526 5djc:B (2.1) BS01 BMA ? N/A P01857 26996964
    527 5djc:D (2.1) BS02 BMA ? N/A P01857 26996964
    528 5djx:A (2.25) BS02 BMA ? N/A P01857 26996964
    529 5djx:B (2.25) BS01 BMA ? N/A P01857 26996964
    530 5djx:D (2.25) BS03 BMA ? N/A P01857 26996964
    531 5djx:E (2.25) BS01 BMA ? N/A P01857 26996964
    532 5dk2:A (2.6) BS02 BMA ? N/A P01857 26996964
    533 5dk2:B (2.6) BS01 BMA ? N/A P01857 26996964
    534 5dk3:B (2.28) BS01 BMA N/A N/A N/A 26595420
    535 5esv:A (3.105) BS01 BMA ? N/A S6BGE0 26689967
    536 5fiw:C (1.7) BS03 BMA 1.11.2.2 GO:0004601 ... P05164 N/A
    537 5fiw:D (1.7) BS02 BMA 1.11.2.2 GO:0004601 ... P05164 N/A
    538 5fji:A (1.95) BS01 BMA 3.2.1.21 GO:0004553 ... Q4WJJ3 26894673
    539 5fji:B (1.95) BS02 BMA 3.2.1.21 GO:0004553 ... Q4WJJ3 26894673
    540 5fjj:A (1.95) BS01 BMA 3.2.1.21 GO:0004553 ... Q2UUD6 26894673
    541 5fjj:B (1.95) BS01 BMA 3.2.1.21 GO:0004553 ... Q2UUD6 26894673
    542 5fu2:A (1.4) BS01 BMA ? GO:0046872 ... A0A1A9TAF4 27298375
    543 5fu2:A (1.4) BS02 BMA ? GO:0046872 ... A0A1A9TAF4 27298375
    544 5fu2:B (1.4) BS01 BMA ? GO:0046872 ... A0A1A9TAF4 27298375
    545 5fu2:B (1.4) BS02 BMA ? GO:0046872 ... A0A1A9TAF4 27298375
    546 5fu2:B (1.4) BS03 BMA ? GO:0046872 ... A0A1A9TAF4 27298375
    547 5fu4:A (2.0) BS01 BMA ? N/A A0A1A9TA80 27298375
    548 5fu4:A (2.0) BS02 BMA ? N/A A0A1A9TA80 27298375
    549 5fu4:B (2.0) BS01 BMA ? N/A A0A1A9TA80 27298375
    550 5fu4:B (2.0) BS02 BMA ? N/A A0A1A9TA80 27298375
    551 5fuu:M (4.19) BS01 BMA N/A N/A N/A 26941313
    552 5gsq:A (1.85) BS01 BMA ? N/A P01857 28318221
    553 5gsq:B (1.85) BS01 BMA ? N/A P01857 28318221
    554 5gsq:D (1.85) BS01 BMA ? N/A P01857 28318221
    555 5huk:A (2.45) BS01 BMA 3.2.1.18 GO:0004308 ... A0A0C4WXC5 27053557
    556 5huk:B (2.45) BS01 BMA 3.2.1.18 GO:0004308 ... A0A0C4WXC5 27053557
    557 5huk:D (2.45) BS01 BMA 3.2.1.18 GO:0004308 ... A0A0C4WXC5 27053557
    558 5hvw:A (1.95) BS01 BMA ? N/A P01861 27479095
    559 5hy9:A (2.7) BS01 BMA ? N/A P01857 28985438
    560 5hye:A (1.89) BS01 BMA ? N/A P01857 28985438
    561 5hye:C (1.89) BS01 BMA ? N/A P01857 28985438
    562 5hyf:A (1.8) BS01 BMA ? N/A P01857 28985438
    563 5hyi:A (2.9) BS01 BMA ? N/A P01857 28985438
    564 5hyi:C (2.9) BS01 BMA ? N/A P01857 28985438
    565 5hyi:D (2.9) BS01 BMA ? N/A P01857 28985438
    566 5ida:A (1.1) BS01 BMA ? GO:0046872 ... K1QRB6 27377186 MOAD: Ka=2000M^-1
    567 5ida:B (1.1) BS01 BMA ? GO:0046872 ... K1QRB6 27377186 MOAD: Ka=2000M^-1
    568 5ida:D (1.1) BS01 BMA ? GO:0046872 ... K1QRB6 27377186 MOAD: Ka=2000M^-1
    569 5idb:A (1.0) BS01 BMA ? GO:0046872 ... K1QRB6 27377186 MOAD: Ka=2000M^-1
    570 5idb:A (1.0) BS03 BMA ? GO:0046872 ... K1QRB6 27377186 MOAD: Ka=2000M^-1
    571 5idb:B (1.0) BS01 BMA ? GO:0046872 ... K1QRB6 27377186 MOAD: Ka=2000M^-1
    572 5idb:B (1.0) BS03 BMA ? GO:0046872 ... K1QRB6 27377186 MOAD: Ka=2000M^-1
    573 5iw3:A (2.05) BS01 BMA ? N/A P01857 N/A
    574 5iw6:A (2.34) BS01 BMA ? N/A P01857 N/A
    575 5iw6:B (2.34) BS01 BMA ? N/A P01857 N/A
    576 5jih:A (1.663) BS01 BMA ? N/A P01857 28528777
    577 5jih:B (1.663) BS01 BMA ? N/A P01857 28528777
    578 5jii:A (1.79) BS01 BMA ? N/A P01857 28528777
    579 5jii:B (1.79) BS01 BMA ? N/A P01857 28528777
    580 5jik:B (1.82) BS01 BMA ? N/A P01857 28528777
    581 5js9:A (6.918) BS03 BMA N/A N/A N/A 27349805
    582 5js9:E (6.918) BS01 BMA N/A N/A N/A 27349805
    583 5jsa:E (6.308) BS01 BMA N/A N/A N/A 27349805
    584 5ju6:A (2.2) BS01 BMA 3.2.1.21 GO:0004553 ... Q8TGI8 27377383
    585 5ju6:C (2.2) BS01 BMA 3.2.1.21 GO:0004553 ... Q8TGI8 27377383
    586 5ju6:D (2.2) BS01 BMA 3.2.1.21 GO:0004553 ... Q8TGI8 27377383
    587 5ju9:A (1.18) BS02 BMA 3.2.1.78 GO:0016985 ... A0A1L1QK13 28058278
    588 5ju9:A (1.18) BS03 BMA 3.2.1.78 GO:0016985 ... A0A1L1QK13 28058278
    589 5jug:A (0.96) BS01 BMA 3.2.1.78 GO:0016985 ... A0A1L1QK16 28058278
    590 5jug:A (0.96) BS02 BMA 3.2.1.78 GO:0016985 ... A0A1L1QK16 28058278
    591 5jug:A (0.96) BS03 BMA 3.2.1.78 GO:0016985 ... A0A1L1QK16 28058278
    592 5jug:A (0.96) BS04 BMA 3.2.1.78 GO:0016985 ... A0A1L1QK16 28058278
    593 5jug:A (0.96) BS05 BMA 3.2.1.78 GO:0016985 ... A0A1L1QK16 28058278
    594 5k64:A (2.44) BS01 BMA ? N/A P01857 28816592
    595 5k64:B (2.44) BS01 BMA ? N/A P01857 28816592
    596 5k65:A (2.5) BS01 BMA ? N/A P01857 28816592
    597 5k65:B (2.5) BS01 BMA ? N/A P01857 28816592
    598 5lds:A (2.0) BS01 BMA 3.4.11.2 GO:0001525 ... P15145 28393915
    599 5lds:D (2.0) BS01 BMA 3.4.11.2 GO:0001525 ... P15145 28393915
    600 5lds:D (2.0) BS02 BMA 3.4.11.2 GO:0001525 ... P15145 28393915
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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