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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1255 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 2zey:B (2.2) BS03 BMA ? GO:0016798 ... Q9ZA17 18025086
    202 2zey:B (2.2) BS04 BMA ? GO:0016798 ... Q9ZA17 18025086
    203 3aof:A (1.288) BS01 BMA 3.2.1.4 GO:0000272 ... Q9X273 21839861
    204 3aof:B (1.288) BS01 BMA 3.2.1.4 GO:0000272 ... Q9X273 21839861
    205 3aof:B (1.288) BS02 BMA 3.2.1.4 GO:0000272 ... Q9X273 21839861
    206 3ave:A (2.0) BS01 BMA ? N/A P01857 N/A
    207 3ave:B (2.0) BS01 BMA ? N/A P01857 N/A
    208 3ay4:A (2.2) BS01 BMA ? N/A P01857 22023369
    209 3ay4:B (2.2) BS01 BMA ? N/A P01857 22023369
    210 3azs:A (1.69) BS02 BMA 3.2.1.4 GO:0000272 ... Q9X273 21839861
    211 3azs:A (1.69) BS03 BMA 3.2.1.4 GO:0000272 ... Q9X273 21839861
    212 3azs:B (1.69) BS01 BMA 3.2.1.4 GO:0000272 ... Q9X273 21839861
    213 3azs:B (1.69) BS03 BMA 3.2.1.4 GO:0000272 ... Q9X273 21839861
    214 3d6g:A (2.3) BS01 BMA ? N/A P01857 19924842
    215 3d6g:B (2.3) BS01 BMA ? N/A P01857 19924842
    216 3do3:B (2.5) BS01 BMA ? N/A P01857 N/A
    217 3f9p:C (2.93) BS01 BMA 1.11.2.2 GO:0004601 ... P05164 19608745
    218 3ffo:A (2.1) BS01 BMA ? GO:0009289 ... Q47200 24833052
    219 3fhq:A (2.452) BS01 BMA 3.2.1.96 GO:0004553 ... Q9ZB22 19252736
    220 3fhq:B (2.452) BS01 BMA 3.2.1.96 GO:0004553 ... Q9ZB22 19252736
    221 3fhq:D (2.452) BS01 BMA 3.2.1.96 GO:0004553 ... Q9ZB22 19252736
    222 3fhq:F (2.452) BS01 BMA 3.2.1.96 GO:0004553 ... Q9ZB22 19252736
    223 3fjt:A (2.5) BS01 BMA ? N/A P01857 19250681
    224 3fjw:A (2.8) BS01 BMA 1.11.1.16 GO:0000302 ... O94753 N/A
    225 3fjw:B (2.8) BS01 BMA 1.11.1.16 GO:0000302 ... O94753 N/A
    226 3man:A (1.6) BS02 BMA 3.2.1.78 GO:0000272 ... Q9ZF13 9817845
    227 3oeb:A (1.55) BS01 BMA ? GO:0016798 ... Q9ZA17 20739280
    228 3oeb:A (1.55) BS02 BMA ? GO:0016798 ... Q9ZA17 20739280
    229 3oeb:A (1.55) BS03 BMA ? GO:0016798 ... Q9ZA17 20739280
    230 3og2:A (1.2) BS04 BMA 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    231 3ogr:A (1.5) BS04 BMA 3.2.1.23 GO:0004553 ... Q70SY0 21130883
    232 3ojy:A (2.51) BS02 BMA ? GO:0001848 ... P07357 21454577
    233 3ojy:A (2.51) BS03 BMA ? GO:0001848 ... P07357 21454577
    234 3ojy:A (2.51) BS04 BMA ? GO:0001848 ... P07357 21454577
    235 3ojy:B (2.51) BS02 BMA ? GO:0005576 ... P07358 21454577
    236 3ojy:B (2.51) BS03 BMA ? GO:0005576 ... P07358 21454577
    237 3ojy:B (2.51) BS04 BMA ? GO:0005576 ... P07358 21454577
    238 3ojy:B (2.51) BS05 BMA ? GO:0005576 ... P07358 21454577
    239 3qib:C (2.7) BS03 BMA ? N/A P01848 21490152
    240 3rg1:D (2.91) BS01 BMA ? GO:0006955 ... A4IFT3 21857663
    241 3rg1:H (2.91) BS01 BMA ? GO:0006955 ... A4IFT3 21857663
    242 3rg1:L (2.91) BS01 BMA ? GO:0006955 ... A4IFT3 21857663
    243 3s5x:A (1.65) BS01 BMA ? GO:0005537 ... P84330 21827952
    244 3s5x:A (1.65) BS04 BMA ? GO:0005537 ... P84330 21827952
    245 3sgj:A (2.2) BS01 BMA ? N/A P01857 21768335
    246 3sgj:B (2.2) BS01 BMA ? N/A P01857 21768335
    247 3sgk:A (2.4) BS01 BMA ? N/A P01857 21768335
    248 3tia:A (1.8) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 22028647
    249 3tia:B (1.8) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 22028647
    250 3tia:C (1.8) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 22028647
    251 3tia:D (1.8) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 22028647
    252 3tib:A (2.201) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 22028647
    253 3tib:B (2.201) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 22028647
    254 3tib:C (2.201) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 22028647
    255 3tib:D (2.201) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 22028647
    256 3tic:A (1.89) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 22028647
    257 3tic:B (1.89) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 22028647
    258 3tic:C (1.89) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 22028647
    259 3tic:D (1.89) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 22028647
    260 3tyg:H (3.25) BS02 BMA ? N/A P01857 21998254
    261 3u7b:B (1.94) BS01 BMA 3.2.1.8 GO:0004553 ... B3A0S5 22751658
    262 3vn4:A (2.8) BS03 BMA 3.4.24.87 GO:0030198 ... Q76LX8 23621748
    263 3w7t:A (1.5) BS02 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    264 3w7t:A (1.5) BS03 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    265 3w7t:A (1.5) BS04 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    266 3w7t:B (1.5) BS02 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    267 3w7t:B (1.5) BS03 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    268 3w7t:B (1.5) BS04 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    269 3w7t:B (1.5) BS05 BMA 3.2.1.- GO:0004555 ... P42592 18586271
    270 3was:A (1.5) BS02 BMA 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    271 3was:B (1.5) BS02 BMA 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    272 3wat:A (1.6) BS04 BMA 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    273 3wat:B (1.6) BS04 BMA 2.4.1.281 GO:0005975 ... Q5LH68 23954514
    274 3wdr:A (1.4) BS05 BMA 3.2.1.78 GO:0004553 ... H7CGE2 24570006
    275 3wdr:A (1.4) BS06 BMA 3.2.1.78 GO:0004553 ... H7CGE2 24570006
    276 3wjj:A (2.6) BS01 BMA ? N/A P01857 23744091
    277 3wjj:B (2.6) BS01 BMA ? N/A P01857 23744091
    278 3wjl:A (2.86) BS01 BMA ? N/A P01857 23744091
    279 3wkg:A (1.47) BS01 BMA 5.1.3.11 GO:0005975 ... F8WRK9 24362032
    280 3wkh:A (1.644) BS01 BMA 5.1.3.11 GO:0005975 ... F8WRK9 24362032
    281 3wkn:D (2.9) BS02 BMA ? N/A P01857 26299673
    282 3wkn:I (2.9) BS01 BMA ? N/A P01857 26299673
    283 3wkn:J (2.9) BS02 BMA ? N/A P01857 26299673
    284 3wkn:M (2.9) BS01 BMA ? N/A P01857 26299673
    285 3wkn:N (2.9) BS01 BMA ? N/A P01857 26299673
    286 3wn5:A (2.78) BS01 BMA ? N/A P01857 24334029
    287 3wn5:D (2.78) BS01 BMA ? N/A P01857 24334029
    288 3wn5:E (2.78) BS01 BMA ? N/A P01857 24334029
    289 3zyr:A (1.65) BS01 BMA ? GO:0030246 ... G1EUI6 22692206 PDBbind: -logKd/Ki=5.34, Kd=4.6uM
    290 3zyr:B (1.65) BS01 BMA ? GO:0030246 ... G1EUI6 22692206
    291 4a5w:B (3.5) BS03 BMA ? GO:0001701 ... P13671 22832194
    292 4a5w:B (3.5) BS04 BMA ? GO:0001701 ... P13671 22832194
    293 4a5w:B (3.5) BS05 BMA ? GO:0001701 ... P13671 22832194
    294 4arn:B (2.41) BS01 BMA ? N/A P08953
    Q4G1L2    		 23245851
    295 4b7i:A (2.36) BS01 BMA ? N/A P01857 23025485
    296 4bsv:A (1.75) BS01 BMA ? N/A P01857 23924797
    297 4bsw:B (2.15) BS01 BMA ? N/A P01857 23924797
    298 4byh:B (2.3) BS01 BMA ? N/A P01857 23929778
    299 4c54:A (1.9) BS01 BMA ? N/A P01861 24211234
    300 4c54:B (1.9) BS01 BMA ? N/A P01861 24211234
    301 4c55:A (2.35) BS01 BMA ? N/A P01861 24211234
    302 4c55:B (2.35) BS01 BMA ? N/A P01861 24211234
    303 4cd4:A (1.2) BS01 BMA 3.2.1.78 GO:0004553 ... B3PGI1 24339341 PDBbind: -logKd/Ki=6.58, Ki=263nM
    304 4cd5:A (1.1) BS01 BMA 3.2.1.78 GO:0004553 ... B3PGI1 24339341 PDBbind: -logKd/Ki=6.71, Ki=194nM
    305 4cd6:A (1.64) BS02 BMA 3.2.1.78 N/A A5H1I6 24339341 PDBbind: -logKd/Ki=3.59, Ki=0.26mM
    306 4cd7:A (1.65) BS02 BMA 3.2.1.78 N/A A5H1I6 24339341
    307 4cd7:A (1.65) BS05 BMA 3.2.1.78 N/A A5H1I6 24339341
    308 4cd7:B (1.65) BS02 BMA 3.2.1.78 N/A A5H1I6 24339341
    309 4cd7:B (1.65) BS04 BMA 3.2.1.78 N/A A5H1I6 24339341
    310 4cd8:A (1.47) BS02 BMA 3.2.1.78 N/A A5H1I6 24339341 PDBbind: -logKd/Ki=2.89, Ki=1.3mM
    311 4dn8:A (2.2) BS03 BMA ? N/A Q9N1X4 22685299
    312 4dvl:B (2.75) BS01 BMA 2.7.7.48
    3.4.21.113
    3.4.22.-
    3.6.1.15
    3.6.4.13
    4.6.1.19    		 GO:0003723 ... Q96662 22579253
    313 4dwa:A (3.01) BS02 BMA 2.7.7.48
    3.4.21.113
    3.4.22.-
    3.6.1.15
    3.6.4.13
    4.6.1.19    		 GO:0003723 ... Q96662 22579253
    314 4dwa:B (3.01) BS01 BMA 2.7.7.48
    3.4.21.113
    3.4.22.-
    3.6.1.15
    3.6.4.13
    4.6.1.19    		 GO:0003723 ... Q96662 22579253
    315 4dz8:A (1.91) BS01 BMA ? N/A P01857 22543237
    316 4dz8:B (1.91) BS01 BMA ? N/A P01857 22543237
    317 4fbv:A (1.76) BS01 BMA ? GO:0030246 ... P07386 22865886
    318 4fbv:A (1.76) BS04 BMA ? GO:0030246 ... P07386 22865886
    319 4fz9:A (1.7) BS01 BMA 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    320 4gk9:A (1.9) BS01 BMA ? GO:0030246 ... R4GRU1 23480609
    321 4gk9:A (1.9) BS04 BMA ? GO:0030246 ... R4GRU1 23480609
    322 4gk9:A (1.9) BS08 BMA ? GO:0030246 ... R4GRU1 23480609
    323 4gk9:A (1.9) BS11 BMA ? GO:0030246 ... R4GRU1 23480609
    324 4gzs:B (2.35) BS01 BMA 3.2.1.18 GO:0004308 ... K7N5N8 23015718
    325 4gzs:D (2.35) BS01 BMA 3.2.1.18 GO:0004308 ... K7N5N8 23015718
    326 4gzt:A (2.19) BS01 BMA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    327 4gzt:B (2.19) BS01 BMA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    328 4gzt:C (2.19) BS01 BMA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    329 4gzt:D (2.19) BS01 BMA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    330 4gzw:C (2.45) BS01 BMA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    331 4gzw:D (2.45) BS01 BMA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    332 4gzx:B (2.45) BS01 BMA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    333 4gzx:D (2.45) BS01 BMA 3.2.1.18 GO:0004308 ... K7N5N3 23015718
    334 4h52:A (1.803) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 23422659
    335 4h53:A (1.5) BS02 BMA 3.2.1.18 GO:0004308 ... Q194T1 23422659
    336 4h53:B (1.5) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 23422659
    337 4h53:C (1.5) BS02 BMA 3.2.1.18 GO:0004308 ... Q194T1 23422659
    338 4h53:D (1.5) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 23422659
    339 4haf:A (2.04) BS01 BMA ? N/A P01859 23628091
    340 4hag:A (3.4) BS01 BMA ? N/A P01859 23628091
    341 4hj1:A (1.9) BS01 BMA ? N/A P03518 23319635
    342 4iib:A (1.8) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    343 4iib:B (1.8) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    344 4iic:A (1.9) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    345 4iic:B (1.9) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    346 4iid:A (2.3) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    347 4iid:B (2.3) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    348 4iie:A (2.0) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    349 4iie:B (2.0) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    350 4iif:A (2.45) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    351 4iif:B (2.45) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    352 4iig:A (2.3) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    353 4iig:B (2.3) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    354 4iih:A (2.0) BS01 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    355 4iih:B (2.0) BS02 BMA 3.2.1.21 GO:0004553 ... P48825 23537284
    356 4iug:A (2.6) BS06 BMA 3.2.1.23 GO:0004553 ... Q2UCU3 23688418
    357 4j12:A (1.9) BS01 BMA ? N/A P01857 23615911
    358 4j4p:A (2.91) BS01 BMA ? N/A P01854 24632569
    359 4jie:A (2.45) BS01 BMA 3.2.1.25 GO:0004553 ... A2YPH1 24100330
    360 4jm2:B (3.1) BS02 BMA N/A N/A N/A 23708606
    361 4k1h:B (1.797) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 23531861
    362 4k1i:B (1.8) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 23531861
    363 4k1j:A (2.2) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 23531861
    364 4k1k:B (1.6) BS01 BMA 3.2.1.18 GO:0004308 ... Q194T1 23531861
    365 4ku1:B (1.9) BS01 BMA ? N/A P01857 24522230
    366 4l4j:A (1.92) BS01 BMA ? N/A P01859 23872058
    367 4l4j:B (1.92) BS01 BMA ? N/A P01859 23872058
    368 4lea:A (2.55) BS01 BMA ? N/A T2LG16 24516380
    369 4lea:A (2.55) BS02 BMA ? N/A T2LG16 24516380
    370 4lea:A (2.55) BS03 BMA ? N/A T2LG16 24516380
    371 4lea:A (2.55) BS04 BMA ? N/A T2LG16 24516380
    372 4lea:A (2.55) BS05 BMA ? N/A T2LG16 24516380
    373 4lea:B (2.55) BS01 BMA ? N/A T2LG16 24516380
    374 4lea:B (2.55) BS02 BMA ? N/A T2LG16 24516380
    375 4lea:B (2.55) BS03 BMA ? N/A T2LG16 24516380
    376 4lea:B (2.55) BS04 BMA ? N/A T2LG16 24516380
    377 4lea:B (2.55) BS05 BMA ? N/A T2LG16 24516380
    378 4lyq:A (2.0) BS02 BMA N/A GO:0004553 ... N/A 25372687
    379 4lyq:A (2.0) BS03 BMA N/A GO:0004553 ... N/A 25372687
    380 4mmy:A (3.183) BS02 BMA ? GO:0001525 ... P06756 24658351
    381 4n0u:E (3.8) BS01 BMA ? N/A P01857 24469444
    382 4n5z:A (2.9537) BS01 BMA ? GO:0019031 ... Q5EP31 24173215
    383 4nrr:A (2.4) BS02 BMA 3.2.1.78 GO:0004553 ... A0A075C6T6 25372687
    384 4nrr:B (2.4) BS02 BMA 3.2.1.78 GO:0004553 ... A0A075C6T6 25372687
    385 4nrs:A (2.57) BS02 BMA 3.2.1.78 GO:0004553 ... A0A075C6T6 25372687
    386 4nrs:B (2.57) BS01 BMA 3.2.1.78 GO:0004553 ... A0A075C6T6 25372687
    387 4oit:A (2.24) BS04 BMA ? N/A A0QYH7 24957055
    388 4oit:B (2.24) BS02 BMA ? N/A A0QYH7 24957055
    389 4ooz:A (2.6) BS01 BMA 3.2.1.78 N/A B4XC07 25082572
    390 4ooz:A (2.6) BS02 BMA 3.2.1.78 N/A B4XC07 25082572
    391 4ooz:A (2.6) BS03 BMA 3.2.1.78 N/A B4XC07 25082572
    392 4ooz:A (2.6) BS04 BMA 3.2.1.78 N/A B4XC07 25082572
    393 4ooz:A (2.6) BS05 BMA 3.2.1.78 N/A B4XC07 25082572
    394 4ooz:B (2.6) BS01 BMA 3.2.1.78 N/A B4XC07 25082572
    395 4ooz:B (2.6) BS02 BMA 3.2.1.78 N/A B4XC07 25082572
    396 4ooz:B (2.6) BS03 BMA 3.2.1.78 N/A B4XC07 25082572
    397 4ooz:B (2.6) BS04 BMA 3.2.1.78 N/A B4XC07 25082572
    398 4ooz:B (2.6) BS05 BMA 3.2.1.78 N/A B4XC07 25082572
    399 4ooz:B (2.6) BS06 BMA 3.2.1.78 N/A B4XC07 25082572
    400 4p9h:H (3.0) BS01 BMA N/A N/A N/A 24767986
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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