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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1255 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bhg:B (2.53) BS01 BMA 3.2.1.31 GO:0004553 ... P08236 8599764
    2 1bqp:A (2.1) BS04 BMA ? GO:0030246 ... P02867 N/A
    3 1bqp:B (2.1) BS02 BMA ? GO:0030246 ... P02867 N/A
    4 1bqp:C (2.1) BS03 BMA ? GO:0030246 ... P02867 N/A
    5 1bqp:D (2.1) BS02 BMA ? GO:0030246 ... P02867 N/A
    6 1c8i:A (2.0) BS01 BMA 1.11.1.7 GO:0000302 ... P28313 10915789
    7 1ck6:A (1.9) BS01 BMA 1.11.1.7 GO:0000302 ... P28313 10504224
    8 1dn2:A (2.7) BS02 BMA ? N/A P01857 10678837
    9 1dn2:B (2.7) BS02 BMA ? N/A P01857 10678837
    10 1dp5:A (2.2) BS01 BMA 3.4.23.25 GO:0000324 ... P07267 10655612
    11 1e4k:A (3.2) BS01 BMA ? N/A P01857 10917521
    12 1e4k:B (3.2) BS01 BMA ? N/A P01857 10917521
    13 1eth:A (2.8) BS01 BMA 3.1.1.3 GO:0004806 ... P00591 8663362
    14 1eth:C (2.8) BS01 BMA 3.1.1.3 GO:0004806 ... P00591 8663362
    15 1fq4:A (2.7) BS01 BMA 3.4.23.25 GO:0000324 ... P07267 11061973
    16 1fq7:A (2.8) BS01 BMA 3.4.23.25 GO:0000324 ... P07267 11061973
    17 1gpe:A (1.8) BS01 BMA 1.1.3.4 GO:0005576 ... P81156 10216293
    18 1gpe:B (1.8) BS01 BMA 1.1.3.4 GO:0005576 ... P81156 10216293
    19 1gvy:A (1.7) BS02 BMA 3.2.1.78 GO:0000272 ... P49424 12203498
    20 1gvy:A (1.7) BS03 BMA 3.2.1.78 GO:0000272 ... P49424 12203498
    21 1gw0:A (2.4) BS01 BMA 1.10.3.2 GO:0005507 ... Q70KY3 12118243
    22 1gw1:A (1.65) BS02 BMA 3.2.1.78 GO:0000272 ... P49424 12203498
    23 1gwl:A (1.51) BS01 BMA ? N/A Q9C171 12391332
    24 1gwl:A (1.51) BS02 BMA ? N/A Q9C171 12391332
    25 1gwl:A (1.51) BS03 BMA ? N/A Q9C171 12391332
    26 1h3j:A (2.0) BS04 BMA 1.11.1.7 GO:0000302 ... P28314 12777760
    27 1h3j:B (2.0) BS04 BMA 1.11.1.7 GO:0000302 ... P28314 12777760
    28 1h3t:B (2.4) BS01 BMA ? N/A P01857 12527303
    29 1h3u:A (2.4) BS01 BMA ? N/A P01857 12527303
    30 1h3u:B (2.4) BS01 BMA ? N/A P01857 12527303
    31 1h3v:B (3.1) BS01 BMA ? N/A P01857 12527303
    32 1h3w:M (2.85) BS01 BMA ? N/A P01857 12527303
    33 1h4p:A (1.75) BS01 BMA 3.2.1.58 GO:0000272 ... P23776 14730348
    34 1h4p:A (1.75) BS02 BMA 3.2.1.58 GO:0000272 ... P23776 14730348
    35 1hzh:K (2.7) BS01 BMA ? N/A P01857 11498595
    36 1i1c:A (2.7) BS01 BMA ? N/A P20760 11336709
    37 1inh:B (2.4) BS02 BMA 3.2.1.18 GO:0004308 ... P06820 7650674
    38 1ivf:B (2.4) BS01 BMA 3.2.1.18 GO:0004308 ... P06820 7880809
    39 1jdn:A (2.9) BS01 BMA ? GO:0016020 ... P17342 11533490
    40 1l6x:A (1.65) BS01 BMA ? N/A P01857 10754313
    41 1lrh:A (1.9) BS01 BMA ? GO:0000911 ... P13689 12065401
    42 1lyk:A (2.0) BS01 BMA 1.11.1.7 GO:0000302 ... P28314 12777760
    43 1nb3:A (2.8) BS02 BMA 3.4.22.16 GO:0006508 ... O46427 12581647
    44 1nb3:B (2.8) BS02 BMA 3.4.22.16 GO:0006508 ... O46427 12581647
    45 1nb5:A (2.4) BS02 BMA 3.4.22.16 GO:0006508 ... O46427 12581647
    46 1nb5:B (2.4) BS02 BMA 3.4.22.16 GO:0006508 ... O46427 12581647
    47 1nhc:E (1.7) BS01 BMA 3.2.1.15 GO:0004650 ... P26213 14623112
    48 1nmb:N (2.2) BS01 BMA 3.2.1.18 GO:0004308 ... P05803 7994573
    49 1o0v:B (2.6) BS01 BMA ? N/A P01854 12068291
    50 1odz:A (1.4) BS02 BMA 3.2.1.78 GO:0000272 ... P49424 12841226
    51 1odz:B (1.4) BS02 BMA 3.2.1.78 GO:0000272 ... P49424 12841226
    52 1of4:A (1.6) BS01 BMA ? N/A Q9RIK9 12791255
    53 1of4:A (1.6) BS02 BMA ? N/A Q9RIK9 12791255
    54 1of4:A (1.6) BS03 BMA ? N/A Q9RIK9 12791255
    55 1of4:A (1.6) BS04 BMA ? N/A Q9RIK9 12791255
    56 1oh4:A (1.35) BS01 BMA ? N/A Q9RIK9 12791255
    57 1oh4:A (1.35) BS02 BMA ? N/A Q9RIK9 12791255
    58 1oh4:A (1.35) BS03 BMA ? N/A Q9RIK9 12791255
    59 1oh4:A (1.35) BS04 BMA ? N/A Q9RIK9 12791255
    60 1oqo:A (2.3) BS01 BMA ? N/A P01857 N/A
    61 1oqx:B (2.6) BS01 BMA ? N/A P01857 N/A
    62 1ow0:A (3.1) BS01 BMA ? N/A P01876 12768205
    63 1ow0:B (3.1) BS01 BMA ? N/A P01876 12768205
    64 1pmh:X (1.06) BS01 BMA 3.2.1.78 N/A P77847 15210353
    65 1pmh:X (1.06) BS02 BMA 3.2.1.78 N/A P77847 15210353
    66 1pmh:X (1.06) BS03 BMA 3.2.1.78 N/A P77847 15210353
    67 1pmh:X (1.06) BS04 BMA 3.2.1.78 N/A P77847 15210353
    68 1q4g:A (2.0) BS01 BMA 1.14.99.1 GO:0001516 ... P05979 14672659
    69 1qnr:A (1.4) BS01 BMA 3.2.1.78 GO:0000272 ... Q99036 10666621
    70 1qnr:A (1.4) BS02 BMA 3.2.1.78 GO:0000272 ... Q99036 10666621
    71 1rem:A (2.1) BS01 BMA 3.2.1.17 GO:0003796 ... P61626 9757098
    72 1rmg:A (2.0) BS01 BMA 3.2.1.171 GO:0000272 ... Q00001 9115442
    73 1t83:A (3.0) BS01 BMA ? N/A P01857 11297532
    74 1t83:B (3.0) BS01 BMA ? N/A P01857 11297532
    75 1t89:A (3.5) BS01 BMA ? N/A P01857 11297532
    76 1t89:B (3.5) BS01 BMA ? N/A P01857 11297532
    77 1tg7:A (1.9) BS05 BMA 3.2.1.23 GO:0000272 ... Q700S9 15491613
    78 1v0z:A (1.84) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    79 1v0z:B (1.84) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    80 1v0z:C (1.84) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    81 1v0z:D (1.84) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    82 1w1x:A (2.0) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    83 1w1x:B (2.0) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    84 1w1x:C (2.0) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    85 1w20:A (2.08) BS03 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    86 1w20:B (2.08) BS03 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    87 1w20:C (2.08) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    88 1w20:D (2.08) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    89 1w21:A (2.08) BS03 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    90 1w21:B (2.08) BS03 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    91 1w21:C (2.08) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    92 1w21:D (2.08) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    93 1w8u:A (1.3) BS01 BMA ? N/A Q9C171 15784618
    94 1w8u:A (1.3) BS02 BMA ? N/A Q9C171 15784618
    95 1w8u:A (1.3) BS03 BMA ? N/A Q9C171 15784618
    96 1w8u:A (1.3) BS04 BMA ? N/A Q9C171 15784618
    97 1zhs:A (1.8) BS01 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    98 1zhs:A (1.8) BS02 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    99 1zhs:B (1.8) BS01 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    100 1zhs:B (1.8) BS03 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    101 1zhs:C (1.8) BS01 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    102 1zhs:C (1.8) BS03 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    103 1zhs:D (1.8) BS01 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    104 1zhs:D (1.8) BS02 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    105 1zhs:E (1.8) BS01 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    106 1zhs:E (1.8) BS03 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    107 1zhs:F (1.8) BS01 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    108 1zhs:F (1.8) BS03 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    109 1zhs:G (1.8) BS01 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    110 1zhs:G (1.8) BS02 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    111 1zhs:H (1.8) BS01 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    112 1zhs:H (1.8) BS03 BMA 3.2.1.- GO:0005737 ... Q9RHG4 15937331
    113 2arx:B (2.0) BS01 BMA ? GO:0030246 ... Q8GSD2 16704415
    114 2b8h:A (2.2) BS01 BMA 3.2.1.18 GO:0004308 ... P05803 16929094
    115 2b8h:C (2.2) BS01 BMA 3.2.1.18 GO:0004308 ... P05803 16929094
    116 2b8h:D (2.2) BS01 BMA 3.2.1.18 GO:0004308 ... P05803 16929094
    117 2bvt:A (2.9) BS01 BMA 3.2.1.78 GO:0004553 ... Q9XCV5 16171384
    118 2bvt:A (2.9) BS02 BMA 3.2.1.78 GO:0004553 ... Q9XCV5 16171384
    119 2bvt:B (2.9) BS01 BMA 3.2.1.78 GO:0004553 ... Q9XCV5 16171384
    120 2bvt:B (2.9) BS02 BMA 3.2.1.78 GO:0004553 ... Q9XCV5 16171384
    121 2chh:A (1.0) BS04 BMA ? GO:0046872 ... Q8XUA5 15101976
    122 2cml:A (2.15) BS07 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    123 2cml:B (2.15) BS07 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    124 2cml:C (2.15) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    125 2cml:D (2.15) BS01 BMA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    126 2dtx:A (1.6) BS01 BMA 1.1.1.118 GO:0000166 ... Q9HK51 17300803
    127 2dtx:B (1.6) BS01 BMA 1.1.1.118 GO:0000166 ... Q9HK51 17300803
    128 2e33:A (2.7) BS01 BMA ? N/A Q80UW2 17389369
    129 2e6v:A (2.5) BS01 BMA ? GO:0016020 ... P49256 17652092
    130 2fk0:Q (2.95) BS01 BMA ? GO:0019031 ... Q1KHJ8 16543414
    131 2g5b:H (2.3) BS02 BMA ? N/A P84751 16946732
    132 2gj7:A (5.0) BS01 BMA ? N/A P01857 16646632
    133 2gj7:B (5.0) BS01 BMA ? N/A P01857 16646632
    134 2gt4:B (2.3) BS01 BMA 3.6.1.- GO:0000287 ... P32056 16981689
    135 2gt4:C (2.3) BS01 BMA 3.6.1.- GO:0000287 ... P32056 16981689
    136 2gud:A (0.94) BS02 BMA ? GO:0005515 ... P84801 16843894
    137 2gud:A (0.94) BS05 BMA ? GO:0005515 ... P84801 16843894
    138 2gud:B (0.94) BS01 BMA ? GO:0005515 ... P84801 16843894
    139 2j2p:C (2.8) BS03 BMA ? N/A Q15485 17215869
    140 2j6e:A (3.0) BS01 BMA ? N/A P01857 17395205
    141 2j6e:B (3.0) BS01 BMA ? N/A P01857 17395205
    142 2jxr:A (2.4) BS01 BMA 3.4.23.25 GO:0000324 ... P07267 9135120
    143 2man:A (1.9) BS02 BMA 3.2.1.78 GO:0000272 ... Q9ZF13 9817845
    144 2phu:B (2.2) BS01 BMA ? GO:0030246 ... Q8GSD2 17556509
    145 2q8j:A (2.71) BS01 BMA 3.4.21.- GO:0005576 ... P24627 N/A
    146 2ql1:A (2.534) BS01 BMA ? N/A P01857 18078997
    147 2vuo:B (1.95) BS01 BMA ? N/A P01870 18764781
    148 2vuz:A (1.7) BS01 BMA ? GO:0046872 ... Q3KVL7 18687680
    149 2vx5:A (1.47) BS01 BMA N/A GO:0004553 ... N/A 18799462
    150 2vx6:A (1.57) BS01 BMA N/A GO:0004553 ... N/A 18799462
    151 2vx6:A (1.57) BS02 BMA N/A GO:0004553 ... N/A 18799462
    152 2vx6:A (1.57) BS03 BMA N/A GO:0004553 ... N/A 18799462
    153 2vx6:A (1.57) BS04 BMA N/A GO:0004553 ... N/A 18799462
    154 2vx7:A (1.8) BS01 BMA N/A GO:0004553 ... N/A 18799462
    155 2vx7:A (1.8) BS02 BMA N/A GO:0004553 ... N/A 18799462
    156 2whl:A (1.4) BS02 BMA 3.2.1.78 GO:0000272 ... Q5YEX6 19441796
    157 2whm:A (1.5) BS02 BMA 3.2.1.78 GO:0000272 ... P49424 19441796
    158 2x6t:A (2.36) BS03 BMA 5.1.3.20 GO:0005515 ... P67910 20506248
    159 2x6t:B (2.36) BS03 BMA 5.1.3.20 GO:0005515 ... P67910 20506248
    160 2x6t:C (2.36) BS03 BMA 5.1.3.20 GO:0005515 ... P67910 20506248
    161 2x6t:D (2.36) BS03 BMA 5.1.3.20 GO:0005515 ... P67910 20506248
    162 2x6t:E (2.36) BS03 BMA 5.1.3.20 GO:0005515 ... P67910 20506248
    163 2x6t:F (2.36) BS03 BMA 5.1.3.20 GO:0005515 ... P67910 20506248
    164 2x6t:G (2.36) BS03 BMA 5.1.3.20 GO:0005515 ... P67910 20506248
    165 2x6t:H (2.36) BS03 BMA 5.1.3.20 GO:0005515 ... P67910 20506248
    166 2x6t:I (2.36) BS03 BMA 5.1.3.20 GO:0005515 ... P67910 20506248
    167 2x6t:J (2.36) BS03 BMA 5.1.3.20 GO:0005515 ... P67910 20506248
    168 2x86:A (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    169 2x86:C (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    170 2x86:D (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    171 2x86:E (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    172 2x86:F (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    173 2x86:G (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    174 2x86:H (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    175 2x86:I (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    176 2x86:J (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    177 2x86:K (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    178 2x86:L (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    179 2x86:M (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    180 2x86:N (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    181 2x86:O (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    182 2x86:P (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    183 2x86:Q (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    184 2x86:R (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    185 2x86:S (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    186 2x86:T (2.8) BS03 BMA 5.1.3.20 GO:0005975 ... P67911 20506248
    187 2xjp:A (0.95) BS04 BMA ? N/A P38894 21149680
    188 2xjp:A (0.95) BS05 BMA ? N/A P38894 21149680
    189 2yor:A (2.19) BS04 BMA 1.11.2.1 GO:0004601 ... B9W4V6 24126915
    190 2yor:B (2.19) BS05 BMA 1.11.2.1 GO:0004601 ... B9W4V6 24126915
    191 2zbl:A (1.6) BS01 BMA 5.3.1.31 GO:0005975 ... Q8ZKT7 18328504
    192 2zbl:B (1.6) BS01 BMA 5.3.1.31 GO:0005975 ... Q8ZKT7 18328504
    193 2zbl:C (1.6) BS01 BMA 5.3.1.31 GO:0005975 ... Q8ZKT7 18328504
    194 2zbl:D (1.6) BS01 BMA 5.3.1.31 GO:0005975 ... Q8ZKT7 18328504
    195 2zbl:E (1.6) BS01 BMA 5.3.1.31 GO:0005975 ... Q8ZKT7 18328504
    196 2zbl:F (1.6) BS01 BMA 5.3.1.31 GO:0005975 ... Q8ZKT7 18328504
    197 2zey:A (2.2) BS01 BMA ? GO:0016798 ... Q9ZA17 18025086
    198 2zey:A (2.2) BS02 BMA ? GO:0016798 ... Q9ZA17 18025086
    199 2zey:B (2.2) BS01 BMA ? GO:0016798 ... Q9ZA17 18025086
    200 2zey:B (2.2) BS02 BMA ? GO:0016798 ... Q9ZA17 18025086
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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