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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ewj:A (2.5) BS01 BLM ? GO:0046677 ... P13081 11134052 PDBbind: -logKd/Ki=7.49, Kd=32nM
    2 1ewj:A (2.5) BS02 BLM ? GO:0046677 ... P13081 11134052 PDBbind: -logKd/Ki=7.49, Kd=32nM
    3 1ewj:B (2.5) BS01 BLM ? GO:0046677 ... P13081 11134052 PDBbind: -logKd/Ki=7.49, Kd=32nM
    4 1ewj:B (2.5) BS02 BLM ? GO:0046677 ... P13081 11134052 PDBbind: -logKd/Ki=7.49, Kd=32nM
    5 1ewj:C (2.5) BS01 BLM ? GO:0046677 ... P13081 11134052
    6 1ewj:C (2.5) BS02 BLM ? GO:0046677 ... P13081 11134052
    7 1ewj:D (2.5) BS01 BLM ? GO:0046677 ... P13081 11134052
    8 1ewj:D (2.5) BS02 BLM ? GO:0046677 ... P13081 11134052
    9 1ewj:E (2.5) BS01 BLM ? GO:0046677 ... P13081 11134052
    10 1ewj:E (2.5) BS02 BLM ? GO:0046677 ... P13081 11134052
    11 1ewj:F (2.5) BS01 BLM ? GO:0046677 ... P13081 11134052
    12 1ewj:F (2.5) BS02 BLM ? GO:0046677 ... P13081 11134052
    13 1ewj:G (2.5) BS01 BLM ? GO:0046677 ... P13081 11134052
    14 1ewj:G (2.5) BS02 BLM ? GO:0046677 ... P13081 11134052
    15 1ewj:H (2.5) BS01 BLM ? GO:0046677 ... P13081 11134052
    16 1ewj:H (2.5) BS02 BLM ? GO:0046677 ... P13081 11134052
    17 1jie:A (1.8) BS01 BLM ? GO:0046677 ... Q53793 11706014
    18 1jie:A (1.8) BS02 BLM ? GO:0046677 ... Q53793 11706014
    19 1jie:B (1.8) BS01 BLM ? GO:0046677 ... Q53793 11706014
    20 1jie:B (1.8) BS02 BLM ? GO:0046677 ... Q53793 11706014
    21 1jif:A (1.6) BS01 BLM ? GO:0046677 ... Q53793 11706014 PDBbind: -logKd/Ki=6.20, Kd=630nM
    22 1jif:A (1.6) BS02 BLM ? GO:0046677 ... Q53793 11706014 PDBbind: -logKd/Ki=6.20, Kd=630nM
    23 1jif:B (1.6) BS01 BLM ? GO:0046677 ... Q53793 11706014 PDBbind: -logKd/Ki=6.20, Kd=630nM
    24 1jif:B (1.6) BS02 BLM ? GO:0046677 ... Q53793 11706014 PDBbind: -logKd/Ki=6.20, Kd=630nM
    25 1niq:B (-1.00) BS01 BLM ? GO:0046677 ... P13081 N/A
    26 1niq:B (-1.00) BS02 BLM ? GO:0046677 ... P13081 N/A
    27 1niq:C (-1.00) BS01 BLM ? GO:0046677 ... P13081 N/A
    28 1niq:C (-1.00) BS02 BLM ? GO:0046677 ... P13081 N/A
    29 1xrk:A (1.5) BS01 BLM ? GO:0046677 ... P17493 15640151
    30 1xrk:A (1.5) BS02 BLM ? GO:0046677 ... P17493 15640151
    31 1xrk:B (1.5) BS01 BLM ? GO:0046677 ... P17493 15640151
    32 1xrk:B (1.5) BS02 BLM ? GO:0046677 ... P17493 15640151
    33 2a4w:A (1.5) BS01 BLM ? N/A O05205 16756991 PDBbind: -logKd/Ki=8.29, Kd=5.1nM
    34 2a4w:B (1.5) BS01 BLM ? N/A O05205 16756991 PDBbind: -logKd/Ki=8.29, Kd=5.1nM
    35 2a4x:A (1.4) BS01 BLM ? N/A O05205 16756991
    36 2zw7:A (2.8) BS02 BLM ? GO:0005737 ... Q53796 19889644
    37 2zw7:A (2.8) BS03 BLM ? GO:0005737 ... Q53796 19889644
    38 2zw7:B (2.8) BS01 BLM ? GO:0005737 ... Q53796 19889644
    39 2zw7:B (2.8) BS02 BLM ? GO:0005737 ... Q53796 19889644
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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