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BioLiP
Download all results in tab-seperated text for 88 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e77:A (2.69) BS01 BG6 1.1.1.363 GO:0004345 ... P11411 11106478
    2 1e7y:A (2.48) BS01 BG6 1.1.1.363 GO:0004345 ... P11411 11106478
    3 2bhl:A (2.9) BS01 BG6 1.1.1.49 GO:0004345 ... P11413 15858258
    4 2bhl:B (2.9) BS01 BG6 1.1.1.49 GO:0004345 ... P11413 15858258
    5 2cir:A (1.6) BS01 BG6 5.1.3.15 GO:0003824 ... Q03161 16857670 MOAD: Kd=200uM
    6 2nzt:A (2.45) BS02 BG6 2.7.1.1 GO:0001666 ... P52789 29298880
    7 2nzt:A (2.45) BS04 BG6 2.7.1.1 GO:0001666 ... P52789 29298880
    8 2nzt:B (2.45) BS02 BG6 2.7.1.1 GO:0001666 ... P52789 29298880
    9 2nzt:B (2.45) BS04 BG6 2.7.1.1 GO:0001666 ... P52789 29298880
    10 2nzu:G (2.5) BS01 BG6 ? N/A P46828 17376479
    11 2poc:A (1.8) BS01 BG6 2.6.1.16 GO:0097367 ... P53704 17681543
    12 2poc:B (1.8) BS01 BG6 2.6.1.16 GO:0097367 ... P53704 17681543
    13 2poc:C (1.8) BS01 BG6 2.6.1.16 GO:0097367 ... P53704 17681543
    14 2poc:D (1.8) BS01 BG6 2.6.1.16 GO:0097367 ... P53704 17681543
    15 2puw:A (3.151) BS01 BG6 2.6.1.16 GO:0097367 ... P53704 17681543
    16 2puw:B (3.151) BS01 BG6 2.6.1.16 GO:0097367 ... P53704 17681543
    17 2q8m:A (2.05) BS01 BG6 3.1.3.11 GO:0000166 ... P0A993 17567577 MOAD: Ki~700uM
    18 2wf5:A (1.3) BS01 BG6 5.4.2.6 GO:0000287 ... P71447 20164409 PDBbind: -logKd/Ki=6.00, Kd=1uM
    19 2wf6:A (1.4) BS03 BG6 5.4.2.6 GO:0000287 ... P71447 20164409
    20 2wf8:A (1.2) BS04 BG6 5.4.2.6 GO:0000287 ... P71447 22505741
    21 2wf9:A (1.4) BS03 BG6 5.4.2.6 GO:0000287 ... P71447 22505741
    22 3bxg:A (1.8) BS01 BG6 ? GO:0030246 ... O32253 18554327 MOAD: Kd=10.98uM
    PDBbind: -logKd/Ki=4.96, Kd=10.98uM
    23 3bxg:B (1.8) BS01 BG6 ? GO:0030246 ... O32253 18554327 MOAD: Kd=10.98uM
    24 3hm8:A (2.8) BS02 BG6 2.7.1.1 GO:0001678 ... P52790 N/A
    25 3hm8:B (2.8) BS02 BG6 2.7.1.1 GO:0001678 ... P52790 N/A
    26 3hm8:C (2.8) BS02 BG6 2.7.1.1 GO:0001678 ... P52790 N/A
    27 3hm8:D (2.8) BS02 BG6 2.7.1.1 GO:0001678 ... P52790 N/A
    28 3zi4:A (1.33) BS02 BG6 5.4.2.6 GO:0000287 ... P71447 39106858
    29 4f66:A (1.479) BS01 BG6 3.2.1.86 GO:0004553 ... Q8DT00 23519420
    30 4f66:B (1.479) BS01 BG6 3.2.1.86 GO:0004553 ... Q8DT00 23519420
    31 4fpa:A (2.48) BS02 BG6 2.7.1.1 GO:0001678 ... P19367 N/A
    32 4fpa:A (2.48) BS04 BG6 2.7.1.1 GO:0001678 ... P19367 N/A
    33 4fpa:B (2.48) BS02 BG6 2.7.1.1 GO:0001678 ... P19367 N/A
    34 4fpa:B (2.48) BS04 BG6 2.7.1.1 GO:0001678 ... P19367 N/A
    35 4gpn:A (2.291) BS01 BG6 3.2.1.86 GO:0004553 ... Q8DT00 23519420
    36 4gpn:B (2.291) BS02 BG6 3.2.1.86 GO:0004553 ... Q8DT00 23519420
    37 4zep:A (2.21) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 N/A
    38 4zep:B (2.21) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 N/A
    39 4zfm:A (1.4) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 N/A
    40 4zfm:B (1.4) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 N/A
    41 5aq1:A (2.65) BS01 BG6 1.1.1.49 GO:0004345 ... Q4E0B2 27391210
    42 5aq1:B (2.65) BS01 BG6 1.1.1.49 GO:0004345 ... Q4E0B2 27391210
    43 5aq1:C (2.65) BS01 BG6 1.1.1.49 GO:0004345 ... Q4E0B2 27391210
    44 5hg1:A (2.76) BS03 BG6 2.7.1.1 GO:0001666 ... P52789 26985301
    45 5hj5:A (1.7) BS02 BG6 3.5.99.6 GO:0004342 ... Q9KKS5 N/A
    46 5hj5:B (1.7) BS02 BG6 3.5.99.6 GO:0004342 ... Q9KKS5 N/A
    47 5hj5:C (1.7) BS02 BG6 3.5.99.6 GO:0004342 ... Q9KKS5 N/A
    48 5hj5:D (1.7) BS02 BG6 3.5.99.6 GO:0004342 ... Q9KKS5 N/A
    49 5ok2:A (1.1) BS03 BG6 5.4.2.6 GO:0000287 ... P71447 N/A
    50 5oke:A (1.31) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 28975708
    51 5oke:B (1.31) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 28975708
    52 5oke:C (1.31) BS02 BG6 3.2.1.85 GO:0004553 ... W8QF82 28975708
    53 5oke:D (1.31) BS02 BG6 3.2.1.85 GO:0004553 ... W8QF82 28975708
    54 5okg:A (1.25) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 28975708
    55 5okg:B (1.25) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 28975708
    56 5okg:C (1.25) BS02 BG6 3.2.1.85 GO:0004553 ... W8QF82 28975708
    57 5okg:D (1.25) BS02 BG6 3.2.1.85 GO:0004553 ... W8QF82 28975708
    58 5okr:A (2.15) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 28975708
    59 5okr:B (2.15) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 28975708
    60 5oks:A (1.96) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 28975708
    61 5oks:B (1.96) BS01 BG6 3.2.1.85 GO:0004553 ... W8QF82 28975708
    62 5olx:A (1.38) BS02 BG6 5.4.2.6 GO:0000287 ... P71447 29619190
    63 5ukw:A (2.65) BS01 BG6 1.1.1.49 GO:0004345 ... P11413 28370139
    64 6d24:A (3.35) BS01 BG6 1.1.1.49 GO:0004345 ... Q1WBU6 30930048
    65 6d24:B (3.35) BS01 BG6 1.1.1.49 GO:0004345 ... Q1WBU6 30930048
    66 6d24:C (3.35) BS01 BG6 1.1.1.49 GO:0004345 ... Q1WBU6 30930048
    67 6d24:D (3.35) BS01 BG6 1.1.1.49 GO:0004345 ... Q1WBU6 30930048
    68 6hdj:A (1.16) BS03 BG6 5.4.2.6 GO:0000287 ... P71447 N/A
    69 6hdk:A (1.24) BS03 BG6 5.4.2.6 GO:0000287 ... P71447 N/A
    70 6hdl:A (1.16) BS01 BG6 5.4.2.6 GO:0000287 ... P71447 N/A
    71 6hdm:A (1.3) BS03 BG6 5.4.2.6 GO:0000287 ... P71447 N/A
    72 6i03:A (1.02) BS02 BG6 5.4.2.6 GO:0000287 ... P71447 N/A
    73 6ydj:A (1.04) BS01 BG6 5.4.2.6 GO:0000287 ... P71447 33139716
    74 7e6i:A (2.39) BS01 BG6 1.1.1.49 GO:0004345 ... P48828 33765558
    75 7oyl:A (1.78) BS01 BG6 N/A GO:0004347 ... N/A 35913157
    76 7sni:A (2.5) BS03 BG6 1.1.1.49 GO:0004345 ... P11413 35858355
    77 7sni:B (2.5) BS03 BG6 1.1.1.49 GO:0004345 ... P11413 35858355
    78 7sni:C (2.5) BS03 BG6 1.1.1.49 GO:0004345 ... P11413 35858355
    79 7sni:D (2.5) BS03 BG6 1.1.1.49 GO:0004345 ... P11413 35858355
    80 7ual:A (2.9) BS03 BG6 1.1.1.49 GO:0004345 ... P11413 35858355
    81 7ual:B (2.9) BS03 BG6 1.1.1.49 GO:0004345 ... P11413 35858355
    82 7ual:C (2.9) BS03 BG6 1.1.1.49 GO:0004345 ... P11413 35858355
    83 7ual:D (2.9) BS03 BG6 1.1.1.49 GO:0004345 ... P11413 35858355
    84 7zhv:B (3.3) BS01 BG6 1.1.1.49 GO:0000166 ... A2CIL3 36494598
    85 7zhw:B (3.3) BS01 BG6 1.1.1.49 GO:0000166 ... A2CIL3 36494598
    86 7zhz:B (2.5) BS02 BG6 1.1.1.49 GO:0000166 ... A2CIL3 36494598
    87 8b81:A (1.585) BS02 BG6 3.2.1.85 GO:0004553 ... W8QF82 N/A
    88 8b81:B (1.585) BS02 BG6 3.2.1.85 GO:0004553 ... W8QF82 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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