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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3eq6:A (2.4) BS02 BCO 6.2.1.2
    6.2.1.25    		 GO:0004321 ... Q08AH3 19345228
    2 3eq6:B (2.4) BS02 BCO 6.2.1.2
    6.2.1.25    		 GO:0004321 ... Q08AH3 19345228
    3 3q0g:D (2.38) BS01 BCO 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    4 3q0g:F (2.38) BS01 BCO 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    5 4xc7:A (3.45) BS01 BCO 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 25675500
    6 4xc8:A (3.25) BS01 BCO 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 25675500
    7 4xc8:B (3.25) BS01 BCO 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 25675500
    8 5cju:A (3.5) BS02 BCO 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 26318610
    9 5cju:B (3.5) BS02 BCO 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 26318610
    10 5egl:A (2.1) BS01 BCO ? GO:0005829 ... A0A0H3K033 N/A
    11 5egl:B (2.1) BS01 BCO ? GO:0005829 ... A0A0H3K033 N/A
    12 5h86:A (2.08) BS01 BCO 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 27377381 MOAD: Ki=5.6uM
    13 5lkt:A (2.04) BS05 BCO 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    14 7d0q:A (2.21) BS03 BCO 2.3.1.48 GO:0004402 ... O95251 34259319
    15 8bef:x (2.13) BS01 BCO ? GO:0000325 ... Q9SMN1 36585502
    16 8bef:y (2.13) BS03 BCO 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    17 8h65:A (3.0) BS01 BCO 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    18 8h65:B (3.0) BS01 BCO 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    19 8h65:C (3.0) BS01 BCO 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    20 8h65:D (3.0) BS01 BCO 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    21 8h65:E (3.0) BS01 BCO 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    22 8h65:F (3.0) BS01 BCO 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    23 8h65:G (3.0) BS01 BCO 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    24 8h65:H (3.0) BS01 BCO 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92830 37040526
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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