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BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 4v8k:BO (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    1002 4v8k:BO (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    1003 4v8k:BP (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    1004 4v8k:BP (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    1005 4v8k:BQ (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    1006 4v8k:BQ (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    1007 4v8k:BR (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    1008 4v8k:BR (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    1009 4v8k:BS (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    1010 4v8k:BS (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    1011 4v8k:BT (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    1012 4v8k:BT (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    1013 4v8k:BU (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    1014 4v8k:BU (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    1015 4v8k:BV (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    1016 4v8k:BV (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    1017 4v8k:BW (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    1018 4v8k:BW (3.006) BS06 BCL ? GO:0005515 ... D2Z0P2 24670637
    1019 4v8k:BX (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    1020 4v8k:BX (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    1021 4v8k:BY (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    1022 4v8k:BY (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    1023 4v8k:BY (3.006) BS06 BCL ? GO:0005515 ... D2Z0P2 24670637
    1024 4v8k:BZ (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    1025 4v8k:BZ (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    1026 4v9g:A1 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1027 4v9g:A1 (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1028 4v9g:A2 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1029 4v9g:A2 (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1030 4v9g:A3 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1031 4v9g:A3 (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1032 4v9g:A4 (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1033 4v9g:A4 (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1034 4v9g:A5 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1035 4v9g:A6 (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1036 4v9g:A6 (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1037 4v9g:A7 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1038 4v9g:A7 (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1039 4v9g:A8 (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1040 4v9g:A8 (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1041 4v9g:A9 (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1042 4v9g:AD (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1043 4v9g:AD (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1044 4v9g:AE (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1045 4v9g:AE (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1046 4v9g:AF (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1047 4v9g:AF (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1048 4v9g:AG (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1049 4v9g:AI (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1050 4v9g:AI (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1051 4v9g:AJ (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1052 4v9g:AK (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1053 4v9g:AK (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1054 4v9g:AL (7.78) BS01 BCL ? GO:0009772 ... P0C0Y8 24131108
    1055 4v9g:AL (7.78) BS02 BCL ? GO:0009772 ... P0C0Y8 24131108
    1056 4v9g:AL (7.78) BS05 BCL ? GO:0009772 ... P0C0Y8 24131108
    1057 4v9g:AM (7.78) BS01 BCL ? GO:0009772 ... P0C0Y9 24131108
    1058 4v9g:AM (7.78) BS03 BCL ? GO:0009772 ... P0C0Y9 24131108
    1059 4v9g:AM (7.78) BS04 BCL ? GO:0009772 ... P0C0Y9 24131108
    1060 4v9g:AN (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1061 4v9g:AN (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1062 4v9g:AO (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1063 4v9g:AO (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1064 4v9g:AP (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1065 4v9g:AP (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1066 4v9g:AQ (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1067 4v9g:AQ (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1068 4v9g:AS (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1069 4v9g:AT (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1070 4v9g:AT (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1071 4v9g:AT (7.78) BS03 BCL ? GO:0005886 ... P0C0X9 24131108
    1072 4v9g:AU (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1073 4v9g:AU (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1074 4v9g:AV (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1075 4v9g:AV (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1076 4v9g:AW (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1077 4v9g:AX (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1078 4v9g:AY (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1079 4v9g:AZ (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1080 4v9g:AZ (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1081 4v9g:B1 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1082 4v9g:B1 (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1083 4v9g:B2 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1084 4v9g:B3 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1085 4v9g:B4 (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1086 4v9g:B4 (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1087 4v9g:B5 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1088 4v9g:B6 (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1089 4v9g:B6 (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1090 4v9g:B7 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1091 4v9g:B7 (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1092 4v9g:B8 (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1093 4v9g:B8 (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1094 4v9g:B9 (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1095 4v9g:BD (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1096 4v9g:BD (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1097 4v9g:BE (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1098 4v9g:BF (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1099 4v9g:BF (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1100 4v9g:BG (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1101 4v9g:BI (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1102 4v9g:BI (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1103 4v9g:BJ (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1104 4v9g:BK (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1105 4v9g:BK (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1106 4v9g:BL (7.78) BS01 BCL ? GO:0009772 ... P0C0Y8 24131108
    1107 4v9g:BL (7.78) BS02 BCL ? GO:0009772 ... P0C0Y8 24131108
    1108 4v9g:BL (7.78) BS03 BCL ? GO:0009772 ... P0C0Y8 24131108
    1109 4v9g:BM (7.78) BS01 BCL ? GO:0009772 ... P0C0Y9 24131108
    1110 4v9g:BM (7.78) BS02 BCL ? GO:0009772 ... P0C0Y9 24131108
    1111 4v9g:BM (7.78) BS04 BCL ? GO:0009772 ... P0C0Y9 24131108
    1112 4v9g:BN (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1113 4v9g:BN (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1114 4v9g:BO (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1115 4v9g:BO (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1116 4v9g:BP (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1117 4v9g:BP (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1118 4v9g:BQ (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1119 4v9g:BQ (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1120 4v9g:BS (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1121 4v9g:BT (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1122 4v9g:BT (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1123 4v9g:BU (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1124 4v9g:BU (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1125 4v9g:BV (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1126 4v9g:BV (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1127 4v9g:BW (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1128 4v9g:BW (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1129 4v9g:BX (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1130 4v9g:BX (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1131 4v9g:BY (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    1132 4v9g:BY (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    1133 4v9g:BZ (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    1134 4v9g:BZ (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    1135 5b5m:0 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    1136 5b5m:0 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    1137 5b5m:0 (3.3) BS04 BCL ? GO:0005515 ... D2Z0P1 27933779
    1138 5b5m:1 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    1139 5b5m:1 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    1140 5b5m:1 (3.3) BS05 BCL ? GO:0005515 ... D2Z0P2 27933779
    1141 5b5m:2 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1142 5b5m:2 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    1143 5b5m:3 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    1144 5b5m:3 (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    1145 5b5m:4 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1146 5b5m:4 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    1147 5b5m:5 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    1148 5b5m:5 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    1149 5b5m:6 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1150 5b5m:6 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    1151 5b5m:7 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    1152 5b5m:7 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    1153 5b5m:8 (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1154 5b5m:8 (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    1155 5b5m:9 (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    1156 5b5m:9 (3.3) BS05 BCL ? GO:0005515 ... D2Z0P2 27933779
    1157 5b5m:9 (3.3) BS06 BCL ? GO:0005515 ... D2Z0P2 27933779
    1158 5b5m:A (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    1159 5b5m:A (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    1160 5b5m:AA (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    1161 5b5m:AA (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    1162 5b5m:AB (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1163 5b5m:AB (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    1164 5b5m:AC (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    1165 5b5m:AC (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    1166 5b5m:AC (3.3) BS05 BCL ? GO:0005515 ... D2Z0P2 27933779
    1167 5b5m:AD (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1168 5b5m:AD (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    1169 5b5m:AE (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    1170 5b5m:AE (3.3) BS05 BCL ? GO:0005515 ... D2Z0P2 27933779
    1171 5b5m:AF (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1172 5b5m:AF (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    1173 5b5m:AG (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    1174 5b5m:AG (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    1175 5b5m:AH (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1176 5b5m:AH (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    1177 5b5m:AI (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    1178 5b5m:AI (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    1179 5b5m:AJ (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1180 5b5m:AJ (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    1181 5b5m:AK (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    1182 5b5m:AK (3.3) BS03 BCL ? GO:0005515 ... D2Z0P2 27933779
    1183 5b5m:AK (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    1184 5b5m:AL (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1185 5b5m:AL (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    1186 5b5m:B (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1187 5b5m:B (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    1188 5b5m:D (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779
    1189 5b5m:D (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    1190 5b5m:E (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1191 5b5m:E (3.3) BS02 BCL ? GO:0005515 ... D2Z0P1 27933779
    1192 5b5m:F (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    1193 5b5m:F (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    1194 5b5m:G (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1195 5b5m:G (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    1196 5b5m:I (3.3) BS02 BCL ? GO:0005515 ... D2Z0P2 27933779
    1197 5b5m:I (3.3) BS04 BCL ? GO:0005515 ... D2Z0P2 27933779
    1198 5b5m:J (3.3) BS01 BCL ? GO:0005515 ... D2Z0P1 27933779
    1199 5b5m:J (3.3) BS03 BCL ? GO:0005515 ... D2Z0P1 27933779
    1200 5b5m:K (3.3) BS01 BCL ? GO:0005515 ... D2Z0P2 27933779

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218