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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 3zuw:M (2.31) BS04 BCL ? GO:0009772 ... P0C0Y9 21970763
    802 4bcl:A (1.9) BS01 BCL ? GO:0015979 ... P11741 N/A
    803 4bcl:A (1.9) BS02 BCL ? GO:0015979 ... P11741 N/A
    804 4bcl:A (1.9) BS03 BCL ? GO:0015979 ... P11741 N/A
    805 4bcl:A (1.9) BS04 BCL ? GO:0015979 ... P11741 N/A
    806 4bcl:A (1.9) BS05 BCL ? GO:0015979 ... P11741 N/A
    807 4bcl:A (1.9) BS06 BCL ? GO:0015979 ... P11741 N/A
    808 4bcl:A (1.9) BS07 BCL ? GO:0015979 ... P11741 N/A
    809 4cas:B (3.5) BS01 BCL ? GO:0009772 ... P06009 24352554
    810 4cas:B (3.5) BS02 BCL ? GO:0009772 ... P06009 24352554
    811 4cas:B (3.5) BS03 BCL ? GO:0009772 ... P06009 24352554
    812 4cas:C (3.5) BS01 BCL ? GO:0009772 ... P06010 24352554
    813 4cas:C (3.5) BS02 BCL ? GO:0009772 ... P06010 24352554
    814 4cas:C (3.5) BS05 BCL ? GO:0009772 ... P06010 24352554
    815 4h99:L (2.97) BS01 BCL ? GO:0009772 ... P0C0Y8 N/A
    816 4h99:L (2.97) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    817 4h99:L (2.97) BS05 BCL ? GO:0009772 ... P0C0Y8 N/A
    818 4h99:M (2.97) BS01 BCL ? GO:0009772 ... P0C0Y9 N/A
    819 4h99:M (2.97) BS03 BCL ? GO:0009772 ... P0C0Y9 N/A
    820 4h99:M (2.97) BS05 BCL ? GO:0009772 ... P0C0Y9 N/A
    821 4h9l:L (2.77) BS01 BCL ? GO:0009772 ... P0C0Y8 N/A
    822 4h9l:L (2.77) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    823 4h9l:L (2.77) BS05 BCL ? GO:0009772 ... P0C0Y8 N/A
    824 4h9l:M (2.77) BS01 BCL ? GO:0009772 ... P0C0Y9 N/A
    825 4h9l:M (2.77) BS03 BCL ? GO:0009772 ... P0C0Y9 N/A
    826 4h9l:M (2.77) BS05 BCL ? GO:0009772 ... P0C0Y9 N/A
    827 4hbh:L (2.93) BS01 BCL ? GO:0009772 ... P0C0Y8 N/A
    828 4hbh:L (2.93) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    829 4hbh:L (2.93) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    830 4hbh:M (2.93) BS01 BCL ? GO:0009772 ... P0C0Y9 N/A
    831 4hbh:M (2.93) BS03 BCL ? GO:0009772 ... P0C0Y9 N/A
    832 4hbh:M (2.93) BS05 BCL ? GO:0009772 ... P0C0Y9 N/A
    833 4hbj:L (2.74) BS01 BCL ? GO:0009772 ... P0C0Y8 N/A
    834 4hbj:L (2.74) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    835 4hbj:L (2.74) BS05 BCL ? GO:0009772 ... P0C0Y8 N/A
    836 4hbj:M (2.74) BS01 BCL ? GO:0009772 ... P0C0Y9 N/A
    837 4hbj:M (2.74) BS03 BCL ? GO:0009772 ... P0C0Y9 N/A
    838 4hbj:M (2.74) BS05 BCL ? GO:0009772 ... P0C0Y9 N/A
    839 4in5:L (2.2) BS03 BCL ? GO:0009772 ... Q3J1A5 23480277
    840 4in5:L (2.2) BS05 BCL ? GO:0009772 ... Q3J1A5 23480277
    841 4in5:L (2.2) BS06 BCL ? GO:0009772 ... Q3J1A5 23480277
    842 4in5:M (2.2) BS03 BCL ? GO:0009772 ... Q3J1A6 23480277
    843 4in5:M (2.2) BS04 BCL ? GO:0009772 ... Q3J1A6 23480277
    844 4in5:M (2.2) BS05 BCL ? GO:0009772 ... Q3J1A6 23480277
    845 4in6:L (2.7) BS03 BCL ? GO:0009772 ... Q3J1A5 23480277
    846 4in6:L (2.7) BS04 BCL ? GO:0009772 ... Q3J1A5 23480277
    847 4in6:L (2.7) BS05 BCL ? GO:0009772 ... Q3J1A5 23480277
    848 4in6:M (2.7) BS02 BCL ? GO:0009772 ... Q3J1A6 23480277
    849 4in6:M (2.7) BS03 BCL ? GO:0009772 ... Q3J1A6 23480277
    850 4in6:M (2.7) BS04 BCL ? GO:0009772 ... Q3J1A6 23480277
    851 4in7:L (2.85) BS01 BCL ? GO:0009772 ... P0C0Y8 23480277
    852 4in7:L (2.85) BS03 BCL ? GO:0009772 ... P0C0Y8 23480277
    853 4in7:L (2.85) BS04 BCL ? GO:0009772 ... P0C0Y8 23480277
    854 4in7:M (2.85) BS01 BCL ? GO:0009772 ... P0C0Y9 23480277
    855 4in7:M (2.85) BS02 BCL ? GO:0009772 ... P0C0Y9 23480277
    856 4in7:M (2.85) BS03 BCL ? GO:0009772 ... P0C0Y9 23480277
    857 4lwy:L (2.903) BS01 BCL ? GO:0009772 ... P0C0Y8 N/A
    858 4lwy:L (2.903) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    859 4lwy:L (2.903) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    860 4lwy:M (2.903) BS01 BCL ? GO:0009772 ... P0C0Y9 N/A
    861 4lwy:M (2.903) BS04 BCL ? GO:0009772 ... P0C0Y9 N/A
    862 4rcr:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 3186702
    863 4rcr:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 3186702
    864 4rcr:L (2.8) BS06 BCL ? GO:0009772 ... P0C0Y8 3186702
    865 4rcr:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 3186702
    866 4rcr:M (2.8) BS05 BCL ? GO:0009772 ... P0C0Y9 3186702
    867 4rcr:M (2.8) BS06 BCL ? GO:0009772 ... P0C0Y9 3186702
    868 4tqq:L (2.499) BS02 BCL ? GO:0009772 ... P0C0Y8 25285049
    869 4tqq:L (2.499) BS03 BCL ? GO:0009772 ... P0C0Y8 25285049
    870 4tqq:L (2.499) BS07 BCL ? GO:0009772 ... P0C0Y8 25285049
    871 4tqq:M (2.499) BS02 BCL ? GO:0009772 ... P0C0Y9 25285049
    872 4tqq:M (2.499) BS05 BCL ? GO:0009772 ... P0C0Y9 25285049
    873 4tqq:M (2.499) BS06 BCL ? GO:0009772 ... P0C0Y9 25285049
    874 4v8k:A0 (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    875 4v8k:A0 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    876 4v8k:A1 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    877 4v8k:A1 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    878 4v8k:A2 (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    879 4v8k:A2 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    880 4v8k:A2 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P1 24670637
    881 4v8k:A3 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    882 4v8k:A3 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    883 4v8k:A4 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    884 4v8k:A4 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    885 4v8k:A5 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    886 4v8k:A5 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    887 4v8k:A5 (3.006) BS07 BCL ? GO:0005515 ... D2Z0P2 24670637
    888 4v8k:A6 (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    889 4v8k:A6 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    890 4v8k:A7 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    891 4v8k:A7 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    892 4v8k:A8 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    893 4v8k:A8 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    894 4v8k:A9 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    895 4v8k:A9 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    896 4v8k:AA (3.006) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    897 4v8k:AA (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    898 4v8k:AB (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    899 4v8k:AB (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    900 4v8k:AD (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    901 4v8k:AD (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    902 4v8k:AE (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    903 4v8k:AE (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    904 4v8k:AF (3.006) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    905 4v8k:AF (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    906 4v8k:AF (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    907 4v8k:AG (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    908 4v8k:AG (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    909 4v8k:AI (3.006) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    910 4v8k:AI (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    911 4v8k:AJ (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    912 4v8k:AJ (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    913 4v8k:AJ (3.006) BS04 BCL ? GO:0005515 ... D2Z0P1 24670637
    914 4v8k:AK (3.006) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    915 4v8k:AK (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    916 4v8k:AL (3.006) BS01 BCL ? GO:0005515 ... D2Z0P3 24670637
    917 4v8k:AL (3.006) BS04 BCL ? GO:0005515 ... D2Z0P3 24670637
    918 4v8k:AL (3.006) BS05 BCL ? GO:0005515 ... D2Z0P3 24670637
    919 4v8k:AL (3.006) BS06 BCL ? GO:0005515 ... D2Z0P3 24670637
    920 4v8k:AM (3.006) BS02 BCL ? GO:0005515 ... A8ASG6 24670637
    921 4v8k:AM (3.006) BS03 BCL ? GO:0005515 ... A8ASG6 24670637
    922 4v8k:AN (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    923 4v8k:AN (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    924 4v8k:AO (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    925 4v8k:AO (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    926 4v8k:AP (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    927 4v8k:AP (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    928 4v8k:AQ (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    929 4v8k:AQ (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    930 4v8k:AR (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    931 4v8k:AR (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    932 4v8k:AS (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    933 4v8k:AS (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    934 4v8k:AS (3.006) BS07 BCL ? GO:0005515 ... D2Z0P2 24670637
    935 4v8k:AT (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    936 4v8k:AT (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    937 4v8k:AU (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    938 4v8k:AU (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    939 4v8k:AV (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    940 4v8k:AV (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    941 4v8k:AW (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    942 4v8k:AW (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    943 4v8k:AX (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    944 4v8k:AX (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    945 4v8k:AX (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    946 4v8k:AY (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    947 4v8k:AY (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    948 4v8k:AY (3.006) BS06 BCL ? GO:0005515 ... D2Z0P2 24670637
    949 4v8k:AZ (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    950 4v8k:AZ (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    951 4v8k:B0 (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    952 4v8k:B0 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    953 4v8k:B1 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    954 4v8k:B1 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    955 4v8k:B1 (3.006) BS06 BCL ? GO:0005515 ... D2Z0P2 24670637
    956 4v8k:B2 (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    957 4v8k:B2 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    958 4v8k:B2 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P1 24670637
    959 4v8k:B3 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    960 4v8k:B3 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    961 4v8k:B4 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    962 4v8k:B4 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    963 4v8k:B5 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    964 4v8k:B5 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    965 4v8k:B6 (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    966 4v8k:B6 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    967 4v8k:B7 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    968 4v8k:B7 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    969 4v8k:B8 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    970 4v8k:B8 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    971 4v8k:B9 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    972 4v8k:B9 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    973 4v8k:BA (3.006) BS01 BCL ? GO:0005515 ... D2Z0P2 24670637
    974 4v8k:BA (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    975 4v8k:BB (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    976 4v8k:BB (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    977 4v8k:BD (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    978 4v8k:BD (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    979 4v8k:BE (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    980 4v8k:BE (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    981 4v8k:BF (3.006) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    982 4v8k:BF (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    983 4v8k:BG (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    984 4v8k:BG (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    985 4v8k:BG (3.006) BS04 BCL ? GO:0005515 ... D2Z0P1 24670637
    986 4v8k:BI (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    987 4v8k:BI (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    988 4v8k:BJ (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    989 4v8k:BJ (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    990 4v8k:BK (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    991 4v8k:BK (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    992 4v8k:BL (3.006) BS01 BCL ? GO:0005515 ... D2Z0P3 24670637
    993 4v8k:BL (3.006) BS04 BCL ? GO:0005515 ... D2Z0P3 24670637
    994 4v8k:BL (3.006) BS05 BCL ? GO:0005515 ... D2Z0P3 24670637
    995 4v8k:BL (3.006) BS06 BCL ? GO:0005515 ... D2Z0P3 24670637
    996 4v8k:BM (3.006) BS02 BCL ? GO:0005515 ... A8ASG6 24670637
    997 4v8k:BM (3.006) BS03 BCL ? GO:0005515 ... A8ASG6 24670637
    998 4v8k:BM (3.006) BS04 BCL ? GO:0005515 ... A8ASG6 24670637
    999 4v8k:BN (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    1000 4v8k:BN (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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