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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 2boz:M (2.4) BS04 BCL ? GO:0009772 ... P0C0Y9 15908429
    402 2fkw:A (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    403 2fkw:A (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    404 2fkw:A (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    405 2fkw:A (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    406 2fkw:B (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    407 2fkw:B (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    408 2fkw:B (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    409 2fkw:C (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    410 2fkw:C (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    411 2fkw:C (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    412 2fkw:C (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    413 2fkw:D (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    414 2fkw:D (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    415 2fkw:D (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    416 2fkw:E (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    417 2fkw:E (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    418 2fkw:E (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    419 2fkw:E (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    420 2fkw:E (2.45) BS05 BCL ? GO:0005886 ... P26789 16490208
    421 2fkw:F (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    422 2fkw:F (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    423 2fkw:F (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    424 2fkw:G (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    425 2fkw:G (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    426 2fkw:G (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    427 2fkw:G (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    428 2fkw:G (2.45) BS05 BCL ? GO:0005886 ... P26789 16490208
    429 2fkw:H (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    430 2fkw:H (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    431 2fkw:H (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    432 2fkw:I (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    433 2fkw:I (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    434 2fkw:I (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    435 2fkw:J (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    436 2fkw:J (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    437 2fkw:J (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    438 2fkw:K (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    439 2fkw:K (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    440 2fkw:K (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    441 2fkw:K (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    442 2fkw:L (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    443 2fkw:L (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    444 2fkw:L (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    445 2fkw:M (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    446 2fkw:M (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    447 2fkw:M (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    448 2fkw:N (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    449 2fkw:N (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    450 2fkw:N (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    451 2fkw:O (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    452 2fkw:O (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    453 2fkw:O (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    454 2fkw:P (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    455 2fkw:P (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    456 2fkw:P (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    457 2fkw:R (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    458 2fkw:R (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    459 2fkw:R (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    460 2fkw:S (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    461 2fkw:S (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    462 2fkw:S (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    463 2gmr:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 17105193
    464 2gmr:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 17105193
    465 2gmr:L (2.5) BS03 BCL ? GO:0009772 ... P0C0Y8 17105193
    466 2gmr:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 17105193
    467 2gmr:M (2.5) BS02 BCL ? GO:0009772 ... P0C0Y9 17105193
    468 2gmr:M (2.5) BS05 BCL ? GO:0009772 ... P0C0Y9 17105193
    469 2gnu:L (2.2) BS01 BCL ? GO:0009772 ... P0C0Y8 17005199
    470 2gnu:L (2.2) BS02 BCL ? GO:0009772 ... P0C0Y8 17005199
    471 2gnu:L (2.2) BS06 BCL ? GO:0009772 ... P0C0Y8 17005199
    472 2gnu:M (2.2) BS01 BCL ? GO:0009772 ... P0C0Y9 17005199
    473 2gnu:M (2.2) BS04 BCL ? GO:0009772 ... P0C0Y9 17005199
    474 2gnu:M (2.2) BS05 BCL ? GO:0009772 ... P0C0Y9 17005199
    475 2hg3:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 17315985
    476 2hg3:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 17315985
    477 2hg3:L (2.7) BS06 BCL ? GO:0009772 ... P0C0Y8 17315985
    478 2hg3:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 17315985
    479 2hg3:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 17315985
    480 2hg3:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 17315985
    481 2hg9:L (2.45) BS01 BCL ? GO:0009772 ... P0C0Y8 17315985
    482 2hg9:L (2.45) BS02 BCL ? GO:0009772 ... P0C0Y8 17315985
    483 2hg9:L (2.45) BS06 BCL ? GO:0009772 ... P0C0Y8 17315985
    484 2hg9:M (2.45) BS01 BCL ? GO:0009772 ... P0C0Y9 17315985
    485 2hg9:M (2.45) BS04 BCL ? GO:0009772 ... P0C0Y9 17315985
    486 2hg9:M (2.45) BS05 BCL ? GO:0009772 ... P0C0Y9 17315985
    487 2hh1:L (2.55) BS01 BCL ? GO:0009772 ... P0C0Y8 17315985
    488 2hh1:L (2.55) BS02 BCL ? GO:0009772 ... P0C0Y8 17315985
    489 2hh1:L (2.55) BS07 BCL ? GO:0009772 ... P0C0Y8 17315985
    490 2hh1:M (2.55) BS01 BCL ? GO:0009772 ... P0C0Y9 17315985
    491 2hh1:M (2.55) BS05 BCL ? GO:0009772 ... P0C0Y9 17315985
    492 2hh1:M (2.55) BS06 BCL ? GO:0009772 ... P0C0Y9 17315985
    493 2hhk:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 17315985
    494 2hhk:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 17315985
    495 2hhk:L (2.5) BS06 BCL ? GO:0009772 ... P0C0Y8 17315985
    496 2hhk:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 17315985
    497 2hhk:M (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 17315985
    498 2hhk:M (2.5) BS05 BCL ? GO:0009772 ... P0C0Y9 17315985
    499 2hit:L (2.75) BS01 BCL ? GO:0009772 ... P0C0Y8 17315985
    500 2hit:L (2.75) BS02 BCL ? GO:0009772 ... P0C0Y8 17315985
    501 2hit:L (2.75) BS06 BCL ? GO:0009772 ... P0C0Y8 17315985
    502 2hit:M (2.75) BS01 BCL ? GO:0009772 ... P0C0Y9 17315985
    503 2hit:M (2.75) BS04 BCL ? GO:0009772 ... P0C0Y9 17315985
    504 2hit:M (2.75) BS05 BCL ? GO:0009772 ... P0C0Y9 17315985
    505 2hj6:L (3.0) BS01 BCL ? GO:0009772 ... P0C0Y8 17315985
    506 2hj6:L (3.0) BS02 BCL ? GO:0009772 ... P0C0Y8 17315985
    507 2hj6:L (3.0) BS06 BCL ? GO:0009772 ... P0C0Y8 17315985
    508 2hj6:M (3.0) BS01 BCL ? GO:0009772 ... P0C0Y9 17315985
    509 2hj6:M (3.0) BS04 BCL ? GO:0009772 ... P0C0Y9 17315985
    510 2hj6:M (3.0) BS05 BCL ? GO:0009772 ... P0C0Y9 17315985
    511 2j8c:L (1.87) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    512 2j8c:L (1.87) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    513 2j8c:L (1.87) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    514 2j8c:M (1.87) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    515 2j8c:M (1.87) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    516 2j8c:M (1.87) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    517 2j8d:L (2.07) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    518 2j8d:L (2.07) BS02 BCL ? GO:0009772 ... P0C0Y8 17570397
    519 2j8d:L (2.07) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    520 2j8d:M (2.07) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    521 2j8d:M (2.07) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    522 2j8d:M (2.07) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    523 2jiy:L (2.2) BS01 BCL ? GO:0009772 ... P0C0Y8 17711306
    524 2jiy:L (2.2) BS02 BCL ? GO:0009772 ... P0C0Y8 17711306
    525 2jiy:L (2.2) BS03 BCL ? GO:0009772 ... P0C0Y8 17711306
    526 2jiy:M (2.2) BS01 BCL ? GO:0009772 ... P0C0Y9 17711306
    527 2jiy:M (2.2) BS02 BCL ? GO:0009772 ... P0C0Y9 17711306
    528 2jiy:M (2.2) BS04 BCL ? GO:0009772 ... P0C0Y9 17711306
    529 2jj0:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 17711306
    530 2jj0:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 17711306
    531 2jj0:L (2.8) BS03 BCL ? GO:0009772 ... P0C0Y8 17711306
    532 2jj0:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 17711306
    533 2jj0:M (2.8) BS02 BCL ? GO:0009772 ... P0C0Y9 17711306
    534 2jj0:M (2.8) BS04 BCL ? GO:0009772 ... P0C0Y9 17711306
    535 2rcr:L (3.1) BS01 BCL ? GO:0009772 ... P0C0Y8 2036404
    536 2rcr:L (3.1) BS02 BCL ? GO:0009772 ... P0C0Y8 2036404
    537 2rcr:L (3.1) BS06 BCL ? GO:0009772 ... P0C0Y8 2036404
    538 2rcr:M (3.1) BS01 BCL ? GO:0009772 ... P0C0Y9 2036404
    539 2rcr:M (3.1) BS05 BCL ? GO:0009772 ... P0C0Y9 2036404
    540 2rcr:M (3.1) BS06 BCL ? GO:0009772 ... P0C0Y9 2036404
    541 2uws:L (2.9) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    542 2uws:L (2.9) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    543 2uws:L (2.9) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    544 2uws:M (2.9) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    545 2uws:M (2.9) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    546 2uws:M (2.9) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    547 2uwt:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    548 2uwt:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 17570397
    549 2uwt:L (2.5) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    550 2uwt:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    551 2uwt:M (2.5) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    552 2uwt:M (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    553 2uwu:L (2.04) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    554 2uwu:L (2.04) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    555 2uwu:L (2.04) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    556 2uwu:M (2.04) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    557 2uwu:M (2.04) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    558 2uwu:M (2.04) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    559 2uwv:L (2.13) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    560 2uwv:L (2.13) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    561 2uwv:L (2.13) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    562 2uwv:M (2.13) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    563 2uwv:M (2.13) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    564 2uwv:M (2.13) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    565 2uww:L (2.05) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    566 2uww:L (2.05) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    567 2uww:L (2.05) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    568 2uww:M (2.05) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    569 2uww:M (2.05) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    570 2uww:M (2.05) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    571 2ux3:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    572 2ux3:L (2.5) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    573 2ux3:L (2.5) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    574 2ux3:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    575 2ux3:M (2.5) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    576 2ux3:M (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    577 2ux4:L (2.51) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    578 2ux4:L (2.51) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    579 2ux4:L (2.51) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    580 2ux4:M (2.51) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    581 2ux4:M (2.51) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    582 2ux4:M (2.51) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    583 2ux5:L (2.21) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    584 2ux5:L (2.21) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    585 2ux5:L (2.21) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    586 2ux5:M (2.21) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    587 2ux5:M (2.21) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    588 2ux5:M (2.21) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    589 2uxj:L (2.25) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    590 2uxj:L (2.25) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    591 2uxj:L (2.25) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    592 2uxj:M (2.25) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    593 2uxj:M (2.25) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    594 2uxj:M (2.25) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    595 2uxk:L (2.31) BS01 BCL ? GO:0009772 ... P0C0Y8 17570397
    596 2uxk:L (2.31) BS04 BCL ? GO:0009772 ... P0C0Y8 17570397
    597 2uxk:L (2.31) BS05 BCL ? GO:0009772 ... P0C0Y8 17570397
    598 2uxk:M (2.31) BS01 BCL ? GO:0009772 ... P0C0Y9 17570397
    599 2uxk:M (2.31) BS03 BCL ? GO:0009772 ... P0C0Y9 17570397
    600 2uxk:M (2.31) BS04 BCL ? GO:0009772 ... P0C0Y9 17570397
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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