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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1lgh:A (2.4) BS02 BCL ? GO:0005886 ... P97253 8736556
    202 1lgh:A (2.4) BS04 BCL ? GO:0005886 ... P97253 8736556
    203 1lgh:B (2.4) BS01 BCL ? GO:0005886 ... P95673 8736556
    204 1lgh:B (2.4) BS02 BCL ? GO:0005886 ... P95673 8736556
    205 1lgh:B (2.4) BS04 BCL ? GO:0005886 ... P95673 8736556
    206 1lgh:D (2.4) BS02 BCL ? GO:0005886 ... P97253 8736556
    207 1lgh:D (2.4) BS03 BCL ? GO:0005886 ... P97253 8736556
    208 1lgh:D (2.4) BS05 BCL ? GO:0005886 ... P97253 8736556
    209 1lgh:E (2.4) BS01 BCL ? GO:0005886 ... P95673 8736556
    210 1lgh:E (2.4) BS02 BCL ? GO:0005886 ... P95673 8736556
    211 1lgh:E (2.4) BS04 BCL ? GO:0005886 ... P95673 8736556
    212 1lgh:G (2.4) BS01 BCL ? GO:0005886 ... P97253 8736556
    213 1lgh:G (2.4) BS02 BCL ? GO:0005886 ... P97253 8736556
    214 1lgh:G (2.4) BS04 BCL ? GO:0005886 ... P97253 8736556
    215 1lgh:H (2.4) BS01 BCL ? GO:0005886 ... P95673 8736556
    216 1lgh:H (2.4) BS02 BCL ? GO:0005886 ... P95673 8736556
    217 1lgh:H (2.4) BS04 BCL ? GO:0005886 ... P95673 8736556
    218 1lgh:J (2.4) BS02 BCL ? GO:0005886 ... P97253 8736556
    219 1lgh:J (2.4) BS03 BCL ? GO:0005886 ... P97253 8736556
    220 1lgh:J (2.4) BS05 BCL ? GO:0005886 ... P97253 8736556
    221 1lgh:K (2.4) BS01 BCL ? GO:0005886 ... P95673 8736556
    222 1lgh:K (2.4) BS02 BCL ? GO:0005886 ... P95673 8736556
    223 1lgh:K (2.4) BS04 BCL ? GO:0005886 ... P95673 8736556
    224 1m3x:L (2.55) BS01 BCL ? GO:0009772 ... P0C0Y8 12167672
    225 1m3x:L (2.55) BS02 BCL ? GO:0009772 ... P0C0Y8 12167672
    226 1m3x:L (2.55) BS03 BCL ? GO:0009772 ... P0C0Y8 12167672
    227 1m3x:M (2.55) BS01 BCL ? GO:0009772 ... P0C0Y9 12167672
    228 1m3x:M (2.55) BS02 BCL ? GO:0009772 ... P0C0Y9 12167672
    229 1m3x:M (2.55) BS05 BCL ? GO:0009772 ... P0C0Y9 12167672
    230 1mps:L (2.55) BS01 BCL ? GO:0009772 ... P0C0Y8 9537989
    231 1mps:L (2.55) BS02 BCL ? GO:0009772 ... P0C0Y8 9537989
    232 1mps:L (2.55) BS07 BCL ? GO:0009772 ... P0C0Y8 9537989
    233 1mps:M (2.55) BS01 BCL ? GO:0009772 ... P0C0Y9 9537989
    234 1mps:M (2.55) BS05 BCL ? GO:0009772 ... P0C0Y9 9537989
    235 1mps:M (2.55) BS06 BCL ? GO:0009772 ... P0C0Y9 9537989
    236 1nkz:A (2.0) BS01 BCL ? GO:0005886 ... P26789 12595263
    237 1nkz:A (2.0) BS02 BCL ? GO:0005886 ... P26789 12595263
    238 1nkz:A (2.0) BS03 BCL ? GO:0005886 ... P26789 12595263
    239 1nkz:B (2.0) BS01 BCL ? GO:0005886 ... P26790 12595263
    240 1nkz:B (2.0) BS02 BCL ? GO:0005886 ... P26790 12595263
    241 1nkz:B (2.0) BS03 BCL ? GO:0005886 ... P26790 12595263
    242 1nkz:C (2.0) BS01 BCL ? GO:0005886 ... P26789 12595263
    243 1nkz:C (2.0) BS02 BCL ? GO:0005886 ... P26789 12595263
    244 1nkz:C (2.0) BS03 BCL ? GO:0005886 ... P26789 12595263
    245 1nkz:C (2.0) BS04 BCL ? GO:0005886 ... P26789 12595263
    246 1nkz:D (2.0) BS01 BCL ? GO:0005886 ... P26790 12595263
    247 1nkz:D (2.0) BS02 BCL ? GO:0005886 ... P26790 12595263
    248 1nkz:D (2.0) BS03 BCL ? GO:0005886 ... P26790 12595263
    249 1nkz:E (2.0) BS01 BCL ? GO:0005886 ... P26789 12595263
    250 1nkz:E (2.0) BS02 BCL ? GO:0005886 ... P26789 12595263
    251 1nkz:E (2.0) BS03 BCL ? GO:0005886 ... P26789 12595263
    252 1nkz:E (2.0) BS04 BCL ? GO:0005886 ... P26789 12595263
    253 1nkz:F (2.0) BS01 BCL ? GO:0005886 ... P26790 12595263
    254 1nkz:F (2.0) BS02 BCL ? GO:0005886 ... P26790 12595263
    255 1nkz:F (2.0) BS03 BCL ? GO:0005886 ... P26790 12595263
    256 1ogv:L (2.35) BS01 BCL ? GO:0009772 ... P0C0Y8 12899837
    257 1ogv:L (2.35) BS02 BCL ? GO:0009772 ... P0C0Y8 12899837
    258 1ogv:L (2.35) BS04 BCL ? GO:0009772 ... P0C0Y8 12899837
    259 1ogv:M (2.35) BS01 BCL ? GO:0009772 ... P0C0Y9 12899837
    260 1ogv:M (2.35) BS03 BCL ? GO:0009772 ... P0C0Y9 12899837
    261 1ogv:M (2.35) BS04 BCL ? GO:0009772 ... P0C0Y9 12899837
    262 1pcr:L (2.65) BS01 BCL ? GO:0009772 ... P0C0Y8 7866744
    263 1pcr:L (2.65) BS02 BCL ? GO:0009772 ... P0C0Y8 7866744
    264 1pcr:L (2.65) BS03 BCL ? GO:0009772 ... P0C0Y8 7866744
    265 1pcr:M (2.65) BS01 BCL ? GO:0009772 ... P0C0Y9 7866744
    266 1pcr:M (2.65) BS02 BCL ? GO:0009772 ... P0C0Y9 7866744
    267 1pcr:M (2.65) BS05 BCL ? GO:0009772 ... P0C0Y9 7866744
    268 1pss:L (3.0) BS01 BCL ? GO:0009772 ... P0C0Y8 8161514
    269 1pss:L (3.0) BS05 BCL ? GO:0009772 ... P0C0Y8 8161514
    270 1pss:L (3.0) BS06 BCL ? GO:0009772 ... P0C0Y8 8161514
    271 1pss:M (3.0) BS03 BCL ? GO:0009772 ... P0C0Y9 8161514
    272 1pss:M (3.0) BS04 BCL ? GO:0009772 ... P0C0Y9 8161514
    273 1pss:M (3.0) BS05 BCL ? GO:0009772 ... P0C0Y9 8161514
    274 1pst:L (3.0) BS01 BCL ? GO:0009772 ... P0C0Y8 8161514
    275 1pst:L (3.0) BS02 BCL ? GO:0009772 ... P0C0Y8 8161514
    276 1pst:L (3.0) BS06 BCL ? GO:0009772 ... P0C0Y8 8161514
    277 1pst:M (3.0) BS01 BCL ? GO:0009772 ... P0C0Y9 8161514
    278 1pst:M (3.0) BS05 BCL ? GO:0009772 ... P0C0Y9 8161514
    279 1pyh:A (4.8) BS03 BCL N/A N/A N/A 14671305
    280 1pyh:A (4.8) BS04 BCL N/A N/A N/A 14671305
    281 1pyh:B (4.8) BS02 BCL N/A N/A N/A 14671305
    282 1pyh:E (4.8) BS01 BCL N/A N/A N/A 14671305
    283 1pyh:K (4.8) BS01 BCL N/A N/A N/A 14671305
    284 1pyh:S (4.8) BS01 BCL N/A N/A N/A 14671305
    285 1pyh:Y (4.8) BS01 BCL N/A N/A N/A 14671305
    286 1qov:L (2.1) BS01 BCL ? GO:0009772 ... P0C0Y8 10611277
    287 1qov:L (2.1) BS02 BCL ? GO:0009772 ... P0C0Y8 10611277
    288 1qov:L (2.1) BS04 BCL ? GO:0009772 ... P0C0Y8 10611277
    289 1qov:M (2.1) BS01 BCL ? GO:0009772 ... P0C0Y9 10611277
    290 1qov:M (2.1) BS02 BCL ? GO:0009772 ... P0C0Y9 10611277
    291 1qov:M (2.1) BS03 BCL ? GO:0009772 ... P0C0Y9 10611277
    292 1rg5:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 15130469
    293 1rg5:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 15130469
    294 1rg5:L (2.5) BS06 BCL ? GO:0009772 ... P0C0Y8 15130469
    295 1rg5:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 15130469
    296 1rg5:M (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 15130469
    297 1rg5:M (2.5) BS05 BCL ? GO:0009772 ... P0C0Y9 15130469
    298 1rgn:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 15130469
    299 1rgn:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 15130469
    300 1rgn:L (2.8) BS06 BCL ? GO:0009772 ... P0C0Y8 15130469
    301 1rgn:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 15130469
    302 1rgn:M (2.8) BS04 BCL ? GO:0009772 ... P0C0Y9 15130469
    303 1rgn:M (2.8) BS05 BCL ? GO:0009772 ... P0C0Y9 15130469
    304 1rqk:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 15130469
    305 1rqk:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 15130469
    306 1rqk:L (2.7) BS06 BCL ? GO:0009772 ... P0C0Y8 15130469
    307 1rqk:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 15130469
    308 1rqk:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 15130469
    309 1rqk:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 15130469
    310 1rvj:L (2.75) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    311 1rvj:L (2.75) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    312 1rvj:L (2.75) BS06 BCL ? GO:0009772 ... P0C0Y8 15062092
    313 1rvj:M (2.75) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    314 1rvj:M (2.75) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    315 1rvj:M (2.75) BS06 BCL ? GO:0009772 ... P0C0Y9 15062092
    316 1ry5:L (2.1) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    317 1ry5:L (2.1) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    318 1ry5:L (2.1) BS03 BCL ? GO:0009772 ... P0C0Y8 15062092
    319 1ry5:M (2.1) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    320 1ry5:M (2.1) BS02 BCL ? GO:0009772 ... P0C0Y9 15062092
    321 1ry5:M (2.1) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    322 1rzh:L (1.8) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    323 1rzh:L (1.8) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    324 1rzh:L (1.8) BS06 BCL ? GO:0009772 ... P0C0Y8 15062092
    325 1rzh:M (1.8) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    326 1rzh:M (1.8) BS04 BCL ? GO:0009772 ... P0C0Y9 15062092
    327 1rzh:M (1.8) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    328 1rzz:L (2.4) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    329 1rzz:L (2.4) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    330 1rzz:L (2.4) BS03 BCL ? GO:0009772 ... P0C0Y8 15062092
    331 1rzz:M (2.4) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    332 1rzz:M (2.4) BS02 BCL ? GO:0009772 ... P0C0Y9 15062092
    333 1rzz:M (2.4) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    334 1rzz:R (2.4) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    335 1rzz:R (2.4) BS05 BCL ? GO:0009772 ... P0C0Y8 15062092
    336 1rzz:R (2.4) BS06 BCL ? GO:0009772 ... P0C0Y8 15062092
    337 1rzz:S (2.4) BS03 BCL ? GO:0009772 ... P0C0Y9 15062092
    338 1rzz:S (2.4) BS04 BCL ? GO:0009772 ... P0C0Y9 15062092
    339 1rzz:S (2.4) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    340 1s00:L (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    341 1s00:L (2.6) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    342 1s00:L (2.6) BS03 BCL ? GO:0009772 ... P0C0Y8 15062092
    343 1s00:M (2.6) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    344 1s00:M (2.6) BS02 BCL ? GO:0009772 ... P0C0Y9 15062092
    345 1s00:M (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    346 1s00:R (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    347 1s00:R (2.6) BS05 BCL ? GO:0009772 ... P0C0Y8 15062092
    348 1s00:R (2.6) BS06 BCL ? GO:0009772 ... P0C0Y8 15062092
    349 1s00:S (2.6) BS03 BCL ? GO:0009772 ... P0C0Y9 15062092
    350 1s00:S (2.6) BS04 BCL ? GO:0009772 ... P0C0Y9 15062092
    351 1s00:S (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    352 1umx:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 14741581
    353 1umx:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 14741581
    354 1umx:L (2.8) BS04 BCL ? GO:0009772 ... P0C0Y8 14741581
    355 1umx:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 14741581
    356 1umx:M (2.8) BS03 BCL ? GO:0009772 ... P0C0Y9 14741581
    357 1umx:M (2.8) BS04 BCL ? GO:0009772 ... P0C0Y9 14741581
    358 1yf6:L (2.25) BS01 BCL ? GO:0009772 ... P0C0Y8 15865437
    359 1yf6:L (2.25) BS02 BCL ? GO:0009772 ... P0C0Y8 15865437
    360 1yf6:L (2.25) BS07 BCL ? GO:0009772 ... P0C0Y8 15865437
    361 1yf6:L (2.25) BS08 BCL ? GO:0009772 ... P0C0Y8 15865437
    362 1yf6:M (2.25) BS01 BCL ? GO:0009772 ... P0C0Y9 15865437
    363 1yf6:M (2.25) BS04 BCL ? GO:0009772 ... P0C0Y9 15865437
    364 1yf6:M (2.25) BS05 BCL ? GO:0009772 ... P0C0Y9 15865437
    365 1yf6:M (2.25) BS06 BCL ? GO:0009772 ... P0C0Y9 15865437
    366 1yst:L (3.0) BS01 BCL ? GO:0009772 ... P0C0Y8 15299304
    367 1yst:L (3.0) BS02 BCL ? GO:0009772 ... P0C0Y8 15299304
    368 1yst:L (3.0) BS06 BCL ? GO:0009772 ... P0C0Y8 15299304
    369 1yst:L (3.0) BS07 BCL ? GO:0009772 ... P0C0Y8 15299304
    370 1yst:M (3.0) BS01 BCL ? GO:0009772 ... P0C0Y9 15299304
    371 1yst:M (3.0) BS04 BCL ? GO:0009772 ... P0C0Y9 15299304
    372 1yst:M (3.0) BS05 BCL ? GO:0009772 ... P0C0Y9 15299304
    373 1z9j:A (4.5) BS01 BCL ? GO:0009772 ... P0C0Y8 15895982
    374 1z9j:A (4.5) BS02 BCL ? GO:0009772 ... P0C0Y8 15895982
    375 1z9j:A (4.5) BS06 BCL ? GO:0009772 ... P0C0Y8 15895982
    376 1z9j:B (4.5) BS01 BCL ? GO:0009772 ... P0C0Y9 15895982
    377 1z9j:B (4.5) BS05 BCL ? GO:0009772 ... P0C0Y9 15895982
    378 1z9j:B (4.5) BS06 BCL ? GO:0009772 ... P0C0Y9 15895982
    379 1z9k:A (4.6) BS01 BCL ? GO:0009772 ... P0C0Y8 15895982
    380 1z9k:A (4.6) BS02 BCL ? GO:0009772 ... P0C0Y8 15895982
    381 1z9k:A (4.6) BS06 BCL ? GO:0009772 ... P0C0Y8 15895982
    382 1z9k:B (4.6) BS03 BCL ? GO:0009772 ... P0C0Y9 15895982
    383 1z9k:B (4.6) BS04 BCL ? GO:0009772 ... P0C0Y9 15895982
    384 2bnp:A (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 15937492
    385 2bnp:A (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 15937492
    386 2bnp:A (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 15937492
    387 2bnp:B (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 15937492
    388 2bnp:B (2.7) BS03 BCL ? GO:0009772 ... P0C0Y9 15937492
    389 2bnp:B (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 15937492
    390 2bns:A (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 15937492
    391 2bns:A (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 15937492
    392 2bns:A (2.5) BS05 BCL ? GO:0009772 ... P0C0Y8 15937492
    393 2bns:B (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 15937492
    394 2bns:B (2.5) BS03 BCL ? GO:0009772 ... P0C0Y9 15937492
    395 2bns:B (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 15937492
    396 2boz:L (2.4) BS01 BCL ? GO:0009772 ... P0C0Y8 15908429
    397 2boz:L (2.4) BS02 BCL ? GO:0009772 ... P0C0Y8 15908429
    398 2boz:L (2.4) BS05 BCL ? GO:0009772 ... P0C0Y8 15908429
    399 2boz:M (2.4) BS01 BCL ? GO:0009772 ... P0C0Y9 15908429
    400 2boz:M (2.4) BS03 BCL ? GO:0009772 ... P0C0Y9 15908429
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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